BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22240.1
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351250 jgi|Araly1|351250|fgenesh1_pg.C_scaffold_6001843 604 2e-172
> Ahg351250 jgi|Araly1|351250|fgenesh1_pg.C_scaffold_6001843
Length=495
Score = 604 bits (327), Expect = 2e-172
Identities = 426/472 (90%), Gaps = 14/472 (3%)
Strand=Plus/Plus
Query 126 TTTCAAGAAGATGATGAAGTATATACTCAAAACCATATTCAAACCCATTTTTATGGC--- 182
||| ||||||| ||||||| || ||||||||||||||| | || |||||||||||
Sbjct 6 TTTGAAGAAGAAGATGAAGAATGCACTCAAAACCATATTTAGTCCAATTTTTATGGCGTG 65
Query 183 ------ATGCGGTTGCGGCTCTACCGTTCCACCTTCCTCTCAC-AGC-C-ACTACACCCC 233
|||||||||||||||||||||| |||||||||||| | | | ||||||||||
Sbjct 66 TGGTTGTTGCGGTTGCGGCTCTACCGTTCTGCCTTCCTCTCACAACCACTACTACACCCC 125
Query 234 GGGACCACCGGTTTCTCCCACGGTTTTACGCAGCCCATGTCCTAAGATCGATGAGAGCGT 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 126 GGGACCACCGGTTTCTCCCACGGTTTTACGCAGCCCATGTCCTAAGATCGATGAAAGCGT 185
Query 294 CGCGATGGCTAAAGAATCAATCAATCCGTTCGAAGATTACAAGAAGTCGATGAATCAGAT 353
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 186 CGCGATGGCTAAGGAATCAATCAATCCGTTCGAAGATTACAAGAAGTCGATGAACCAGAT 245
Query 354 GATCGAAGAGAGATATATCGAGACGGAA-AGTGAACTTAAGGAGCTTCTAAGGTGTTTCT 412
|||||||||||||||||||||||| ||| | ||| |||||||||||| ||||||||||||
Sbjct 246 GATCGAAGAGAGATATATCGAGACTGAAGA-TGATCTTAAGGAGCTTTTAAGGTGTTTCT 304
Query 413 TGGACATAAACCCTTCTCCTCAACACAATCTCATCGTCCGTGCTTTTGTCGACGTCTGTT 472
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 305 TGGACATAAACCCTTCTCCTCAACACAATCTTATCGTCCGTGCTTTTGTGGACGTCTGTT 364
Query 473 CACATCTCCAACCACCACACGACCGACGTGGGAAGTCACTTGGGAGATTGCTTCGTCTAT 532
|||| || | ||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 365 CACAGCTACGGCCAGCACACGACCGTCGTGGGAAGTCACTTGGGAGATTGCTTCGTCTAT 424
Query 533 ATGTTAACAATCCTCTTGATAACAATGATGATGACTCACACCAAACTTCTTC 584
||||||||||||||||||||| |||||| ||||| |||||||||| |||||
Sbjct 425 ATGTTAACAATCCTCTTGATAGTAATGATAATGACACACACCAAACCTCTTC 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21634218963
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5