BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22250.1
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489075 jgi|Araly1|489075|fgenesh2_kg.6__2209__AT5G22250.1 1386 0.0
Ahg484842 jgi|Araly1|484842|fgenesh2_kg.5__834__AT3G44260.1 678 0.0
> Ahg489075 jgi|Araly1|489075|fgenesh2_kg.6__2209__AT5G22250.1
Length=1083
Score = 1386 bits (750), Expect = 0.0
Identities = 1018/1134 (90%), Gaps = 71/1134 (6%)
Strand=Plus/Plus
Query 63 TTGTCGGCTTAATGTACTTAC-TTAAATACAACGACTTGAATTGCAATAATTCGATACAC 121
|||||||| |||||||||| | || ||||||||||||||||||||||||||| ||||||
Sbjct 1 TTGTCGGCGTAATGTACTT-CGTTTAATACAACGACTTGAATTGCAATAATTGGATACA- 58
Query 122 GAAGGAGAAGCCAACTTAGA-C--T--A---AGTCAAGAAACACATTGAATCATAAACGT 173
||||||||||||||||||| | | | |||||||||||||| ||||||| ||||||
Sbjct 59 -AAGGAGAAGCCAACTTAGACCAATAGACCGAGTCAAGAAACACAGTGAATCA-AAACGT 116
Query 174 GCGCGTTTCTCACACTTCTTCTCCTCTCCTTCCTCGTAAACACTCTCTTACTCACATTCA 233
|||||||||||||| ||||| | |||| ||||| | | || || ||| | ||
Sbjct 117 GCGCGTTTCTCACA---CTTCT-C-CTCC-TCCTC-T---C-CT-TC---CTCGTA-ACA 160
Query 234 TATATATAACTAAACCTTGCAGATTAACCAAATCA--AC----aaaaaaaaaC--AGACT 285
|||||||||||||||||||| ||||||| |||||| || |||||||||| ||||
Sbjct 161 TATATATAACTAAACCTTGCTGATTAACAAAATCATCACGAAAAAAAAAAAACAGAGAC- 219
Query 286 TTTGATAAATTCACAACGAAGAAGAAGACCTAAAAGATCGGGACTTGAAACTATGATCAA 345
||| | || | | || |||||||||||||||||||||| || | || ||||||||
Sbjct 220 TTT--T-AA-T-A-AA-GAAGAAGAAGACCTAAAAGATC-GG----G--AC-ATGATCAA 264
Query 346 ATCAGAAGCAGATCTCTCCGATGTGATCGTGATTCGTGACGTTTGGGCTTATAATCTCGA 405
|| | ||| | | | || |||||||||||||||||||||||| ||||||||||
Sbjct 265 TTC-----C-GATGT-T--G--GT-ATCGTGATTCGTGACGTTTGGGCTGATAATCTCGA 312
Query 406 GTCAGAGTTTGACCTAATCAGAGGAATCGTCGAAGATTACCCATTCATCTCAATGGATAC 465
|||||||||||| |||||||| |||||||| |||| ||||||||||||||| ||||||||
Sbjct 313 GTCAGAGTTTGAACTAATCAGCGGAATCGTTGAAGCTTACCCATTCATCTCCATGGATAC 372
Query 466 AGAATTTCCCGGCGTGATTTACAAGGCGGATCTCGACGTTCTCCGCCGTGGAAACCCTAA 525
|||||||||||||||||||| |||||||||||| | ||||||||| | ||||||||||||
Sbjct 373 AGAATTTCCCGGCGTGATTTTCAAGGCGGATCTAGCCGTTCTCCGTCTTGGAAACCCTAA 432
Query 526 TTATCTCTACAATCTTCTCAAATCCAACGTTGACGCTTTAAGTTTGATCCAAGTCGGTCT 585
|||||||||||||||||||||||| ||||| || |||||||| || ||||||||||||||
Sbjct 433 TTATCTCTACAATCTTCTCAAATCTAACGTCGATGCTTTAAGCTTAATCCAAGTCGGTCT 492
Query 586 TACTCTCTCCGACGCCGACGGAAACCTCCCAGATCTCGGCGGTCaaaaaaaCCGTCGATA 645
||||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct 493 TACTCTCTCTGACGCCGACGGAAACCTCCCAGATCTCGGCGTTC---AAAACCGCCGATT 549
Query 646 CATCTGGGAATTCAATTTCCGTGACTTCGACGTGGAGCGTGATCCACACGCTCCTGATTC 705
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 550 CATCTGGGAATTCAATTTCCGTGACTTCGACGTGGAGCGTGATCCACACGCGCCTGATTC 609
Query 706 GATCGAGCTACTCCGTCGTCACGGGATCGATTTCGAGCGGAACCGTCGCGAAGGTGTTGA 765
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CATCGAGCTGCTCCGTCGTCACGGGATCGATTTCGAGCGGAACCGTCGCGAAGGTGTTGA 669
Query 766 ATCGGAGAGGTTCGCGGAGCTGATGATGTCATCGGGGTTGATCTGTAACGAGTCTGTGAG 825
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 670 ATCGGGGAGGTTCGCGGAGCTGATGATGTCGTCGGGGTTGATCTGTAACGAGTCTGTGAG 729
Query 826 CTGGGTGACGTTTCACAGCGCGTATGATTTTGGTTACCTTGTGAAGATTCTCACGCGCCG 885
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 730 CTGGGTGACGTTTCACAGCGCCTACGATTTCGGTTACCTTGTGAAGATTCTCACGCGCCG 789
Query 886 GCAGCTTCCGGTGGCGTTGCGTGAGTTTTTAGGGTTGCTTAGAGCTTTCTTCGGTGATAG 945
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 790 GGAGCTTCCGGTGGCGTTGCGTGAGTTTTTACGGTTGCTTAGAGCTTTCTTCGGTGAGAG 849
Query 946 GGTTTATGATGTGAAACATATTATGAGGTTTTGTGAGC--A-GAGATTGTATGGTGGTTT 1002
||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 850 GGTTTATGATGTGAAGCATATTATGAGGTTTTGTGAGCAGAGGAGATTGTACGGTGGTTT 909
Query 1003 GGACCGGGTTGCTCGGTCTCTTGAAGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGG 1062
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GGACCGGGTTGCTCGGTCGCTTGAAGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGG 969
Query 1063 TTCGGATAGTTTGCTGACGTGGCAGGCGTTTCAGAGGATGAGGGATTTGTATTTCGTTGA 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 TTCGGATAGTTTGCTGACGTGGCAGGCGTTTCAGAGGATGAGGGATTTGTATTTCGTTGA 1029
Query 1123 GGATGGGGCGGAGAAACACGCCGGAGTTTTGTATGGTTTAGAGGTTTTTTGAGG 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GGATGGGGCGGAGAAACACGCCGGAGTTTTGTATGGTTTAGAGGTTTTTTGAGG 1083
> Ahg484842 jgi|Araly1|484842|fgenesh2_kg.5__834__AT3G44260.1
Length=891
Score = 678 bits (367), Expect = 0.0
Identities = 679/825 (82%), Gaps = 40/825 (5%)
Strand=Plus/Plus
Query 372 TCGTGATTCGTGACGTTTGGGCTTATAATCTCGAGTCAGAGTTTGACCTAATCAGAGGAA 431
|||||| |||||| || ||||| | |||||||| ||||| ||||| ||||||| | ||
Sbjct 53 TCGTGACTCGTGAAGTGTGGGCGGAGAATCTCGAATCAGAATTTGAGTTAATCAGCGAAA 112
Query 432 TCGTCGAAGATTACCCATTCATCTCAATGGATACAGAATTTCCCGGCGTGATTTACAAGG 491
|| |||| ||||| ||||| ||||||||||| || ||||||||||||||||||| |||
Sbjct 113 TCATCGACGATTATCCATTTATCTCAATGGACACTGAATTTCCCGGCGTGATTTTCAA-- 170
Query 492 CGGATCTCGACGTTCTCCGCCGTGGAAA-CCCTAATTATCTCTACAATCTTCTCAAATCC 550
||| ||| |||||| | ||| ||| ||||||| | |||||| ||| |
Sbjct 171 ---ATC-CGA---TCTCCGATTTACAAATCCC-GCCGATCTCTATAGTCTTCTTAAAGCT 222
Query 551 AACGTTGACGC-TTTAAGTTTGATCCAAGTCGGTCTTACTCTCTCCGACGCCGACGGAAA 609
||||| ||||| || ||||| |||||||||||||| |||||||| || || |||| ||
Sbjct 223 AACGTCGACGCGCTT-AGTTTAATCCAAGTCGGTCTCACTCTCTCTGATGCTAACGGTAA 281
Query 610 CCTCCCAGATCTCGGCGGTCaaaaaaaCCGTCGATACATCTGGGAATTCAATTTCCGTGA 669
|||||||||||| |||| |||| |||| ||| ||||||||| ||||||||||| ||
Sbjct 282 CCTCCCAGATCT---CGGTGAAAATCACCGAGGATTCATCTGGGAGTTCAATTTCCGAGA 338
Query 670 CTTCGACGTGGAGCGTGATC-CACACGCTCCTGATTCGATCGAGCTACTCCGTCGTCACG 728
||| || |||| |||||| | ||||||| ||||||||||||||| |||| ||||| || |
Sbjct 339 CTTTGATGTGGCGCGTGA-CGCACACGCGCCTGATTCGATCGAGTTACTTCGTCGGCAAG 397
Query 729 GGATCGATTTCGAGCGGAACCGTCGCGAAGGTGTTGAATCGGAGAGGTTCGCGGAGCTGA 788
| ||||||||||||||||| ||||||| |||||||| ||||||||||| |||||| |||
Sbjct 398 GTATCGATTTCGAGCGGAATTGTCGCGACGGTGTTGATTCGGAGAGGTTTGCGGAGTTGA 457
Query 789 TGATGTCATCGGGG-TTGATCTGTAACGAGTCTGTGAGCTGGGTGACGTTTCACAGCGCG 847
||||||| |||||| ||| | ||||| ||| ||||||||||||||||||||| ||||||
Sbjct 458 TGATGTCGTCGGGGCTTG-TTTGTAATGAGGATGTGAGCTGGGTGACGTTTCATAGCGCG 516
Query 848 TATGATTTTGGTTACCTTG-TGAAGATTCTCACGCGCCG-GCAGCTT--CCGGTGGCGTT 903
|| ||||| ||||| |||| ||||||||||||||||||| | | || |||| |||||
Sbjct 517 TACGATTTCGGTTA-CTTGATGAAGATTCTCACGCGCCGTG-A-ATTGCCCGG-CGCGTT 572
Query 904 GCGTGAGTTTTTAG-G-GTTGCTTAGAGCT-TTCTTCGGTGATAGGGTTTATGATGTGAA 960
| ||||| ||| || | | || | |||| | || || ||||| | || |||||||||||
Sbjct 573 GGGTGAG-TTTAAGCGCG-TGATGAGAG-TGTTGTTTGGTGAGCGCGTGTATGATGTGAA 629
Query 961 ACATATTATGAGGTTTTGTGAGCA-GAGATTGTATGGTGGTTTGGACCGGGTTGCTCGGT 1019
||||| |||| |||||||||| | |||||||| ||||||||| |||||||||||| ||
Sbjct 630 GCATATGATGAAGTTTTGTGAG-AGGAGATTGTTTGGTGGTTTAGACCGGGTTGCTAGGA 688
Query 1020 CTCTTGAAGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGGTTCGGATAGTTTGCTGA 1079
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 689 CGCTTGAGGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGGTTCGGATAGTTTGCTTA 748
Query 1080 CGTGGCAGGCGTTTCAGAGGATGAGGGATTTGTATTTCGTTGAGGATGGGGCGGAGAAAC 1139
||||||| ||||||||||||||||| ||||||||||| ||| | |||||| |||||||||
Sbjct 749 CGTGGCATGCGTTTCAGAGGATGAGAGATTTGTATTTTGTTCAAGATGGGCCGGAGAAAC 808
Query 1140 ACGCCGGAGTTTTGTATGGT-TTAGAGGTTTTTTGAG-GGATTTA 1182
| || || ||||||||||| || |||||||||| || || ||||
Sbjct 809 ATGCTGGGGTTTTGTATGGGCTT-GAGGTTTTTTAAGCGG-TTTA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46586204574
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5