BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22260.1
Length=2194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489076 jgi|Araly1|489076|fgenesh2_kg.6__2210__AT5G22260.1 3238 0.0
> Ahg489076 jgi|Araly1|489076|fgenesh2_kg.6__2210__AT5G22260.1
Length=2125
Score = 3238 bits (1753), Expect = 0.0
Identities = 1992/2107 (95%), Gaps = 17/2107 (1%)
Strand=Plus/Plus
Query 31 ATCATAATATATATCCAAATCTATCATATTCCTATTCCCTCTCTTCTCAAGATCAAACCA 90
||||||||||||||||||||||||| | |||| || ||||| ||||||||||||||
Sbjct 1 ATCATAATATATATCCAAATCTATC--A----TATT-CC-CTCTTGTCAAGATCAAACCA 52
Query 91 AATTTCTGATTCGATGGCGAATCTGATTCGAACAGACCATCAGCAACATATTCCAAAGAA 150
|| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 53 AAGTTCTGATTCCATGGCGAATCTGATTCGAACAGATCATCAGCAGCATATTCCAAAAAA 112
Query 151 GAGGAAGAGAGGGGAAAGTAGAGTTTTTAGGCTGAAGACGTTCGGAGAGTCTGGACATCC 210
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 113 GAGGAAGAGAGGGGAAAGTAGGGTTTTCAGGCTGAAGACGTTCGGAGAGTCAGGACATCC 172
Query 211 AGCTGAGATGAACGAGTTGTCTTTTCGAGATAACCTCGCTAAACTACTTGAGTTTGGTCA 270
||||||| ||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 173 AGCTGAGTTGAACGAGTTGTCCTTTCGAGACAACCTCGCGAAACTACTTGAGTTTGGTCA 232
Query 271 CTTTGAGAGCTCCGGTCTAATGGGAAGTTGGTCTTTTCAGCTCGAGATTCAACGAAATCC 330
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 233 CTTTGAGAGCTCCGGTCTCATGGGAAGTTGGTCTTTTCAGCTCGAGATTCAACGCCACCC 292
Query 331 AAATCCTCTCTATGTTCTTCTCTTTGTCGTAGAAGAGCCCATCGAAGCCTCTCTCAATCT 390
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 293 AAATCCTCTTTATGTGCTTCTCTTTGTAGTAGAAGAGCCCATCGAAGCCTCTCTCAACCT 352
Query 391 CCGTTGCAACCATTGCCAATATGTTGGTTGGGGAAATCAAATGATATGCAACAAGAAGTA 450
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 353 CCGTTGCAACCATTGCCAATATGTTGGTTGGGGAAACCAAATGATATGCAACAAGAAGTA 412
Query 451 CCATTTCGTGATCCCCTCAAAGGAAACAATGGCGGCTTTTTTAAAACTGGAAGGTGGAGG 510
||||||||||||||||||||||||||| ||||| || ||| |||||||||||||||||||
Sbjct 413 CCATTTCGTGATCCCCTCAAAGGAAACGATGGCCGCCTTTCTAAAACTGGAAGGTGGAGG 472
Query 511 CTACGCTTTTCCCGAAAAGGAAAGTTTCTCCCATCTT-GTGGAGCTTCAAGGCCATGTCC 569
|||| |||||| |||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 473 CTACATTTTTCCTGAAAAGGAAAGTCTCTCCCAT-TTGGTGGAGCTTCAAGGCCATGTCC 531
Query 570 TTCACGGCTTCTTTCACTCCAACGGATTTGGTCACTTGCTCTCTCTCAACGGCATTGAAA 629
|||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 532 TTCACGGCTTGTTTCACTCTAACGGATTTGGTCACTTGCTCTCTGTCAACGGCATTGAAA 591
Query 630 CCGGCTCCGACTTAACCGGTCATCAGGTCATGGATTTGTGGGACCGGCTCTGCACCGGTT 689
||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 592 CCGGCTCCGACATAACCGGTCACCAAGTCATGGATTTGTGGGACCGGCTCTGCACCGGTT 651
Query 690 TAAAGGCCAGGAAAATAGGGTTGAATGACGCGTCGCACAAAAAAGGAATGGAGTTGAGGC 749
|||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 652 TAAAGGCCAGGAAAATAGGGTTGAATGATGCATCGCACAAAAAAGGAATGGAGCTGAGGC 711
Query 750 TGCTGCATGGGGTAGCAAAAGGAGAGCCATGGTTCGGTCGTTGGGGCTACCGGTTCGGGT 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 712 TGCTGCATGGGGTAGCAAAAGGAGAGCCATGGTTCGGTCGTTGGGGCTACCGGTTTGGGT 771
Query 810 CAGGGACATACGGAGTGACTCAAAAGATTTACGAGAAGGCACTTGAGTCGGTCCGTAACA 869
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 772 CAGGGACATACGGAGTGACTCAAAAGATTTACGAGAAGGCACTTGAATCGGTCCGTAACA 831
Query 870 TACCCTTGTGCTTGCTTAACCATCACCTAACCAGCCTTAACCGAGAAACTCCAATCCTCT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 832 TACCCTTGTGCTTGCTTAACCATCACCTAACCAGCCTTAACCGAGAAACTCCATTCCTCT 891
Query 930 TGTCAAAGTACCAAAGTTTATCCACCGAGCCATTGATCACTCTCAGTGACCTCTTCAGGT 989
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 892 TGTCAAAGTACCAAAGTTTATCCACTGAGCCATTGATCACTCTCAGTGACCTCTTCAGGT 951
Query 990 TCATGCTTCATCTCCATTCACGTCTTCCAAGAGATAACTACATGAGTAACTCCCGAAACC 1049
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 952 TCATGCTTCATCTCCATTCGCGTCTTCCAAGAGATAACTACATGAATAACTCCCGAAACC 1011
Query 1050 AAATCATCTCCATTGATAGTACCAACTGCAGATGGTCTCAAAAACGGATCCAAATGGCTA 1109
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AAATCATTTCCATTGATAGTAGCAACTGCAGATGGTCTCAAAAACGGATCCAAATGGCTA 1071
Query 1110 TCAAAGTGGTCATAGAGTCACTGAAAAGAGTCGAATACCGATGGATATCGAGACAAGAAG 1169
|||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 1072 TCAAAGTGGTCATAGAGTCATTAAAAAGAGTCGAATACCGATGGATATCGAGGCAAGAAG 1131
Query 1170 TGAGGGATGCAGCTAGAAATTACATTGGGGACACTGGTTTGCTTGATTTTGTGTTGAAGT 1229
||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||||
Sbjct 1132 TGAGGGACGCAGCTAGAAATTACATCGGGGACACAGGTTTGCTTGATTTCGTTTTGAAGT 1191
Query 1230 CGCTTGGGAACCAGGTGGTTGGAAACTATTTGGTCCGACGTAGTCTAAATCCGGTGAAGA 1289
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 CGCTCGGGAACCAGGTGGTCGGAAACTATTTGGTCCGACGTAGTCTAAATCCGGTGAAGA 1251
Query 1290 AAGTGCTAGAGTATTCCTTGGAGGATATATCAAATTTGTTACCAAGTAGTAACAATGAAC 1349
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1252 AAGTGCTAGAGTATTGCTTGGAGGACATATCAAATTTGTTACCAAGTAGTAACAATGAAC 1311
Query 1350 TCATAACCCTTCAAAACCAAAACTCAATGGGGAAGATGGCGACAAACGGTCACAATAAGA 1409
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1312 TCATAACCCTTCAAAATCAAAACTCAATGGGGAAGATGGCGACGAACGGTCACAATAAGA 1371
Query 1410 TCACAAGAGGTCAAGTTATGAAAGACATGTTTTATTTTTACAAACACATTCTCATGGACT 1469
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TCACAAGAGGTCAAGTGATGAAAGACATGTTTTATTTTTACAAACACATTCTCATGGACT 1431
Query 1470 ACAAGGGAGTGTTAGGCCCCATAGGAGGTATATTGAACCAAATCGGAATGGCTTCAAGAG 1529
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1432 ACAAGGGAGTTTTAGGCCCCATAGGAGGCATATTGAACCAAATCGGAATGGCTTCTAGAG 1491
Query 1530 CAATCCTCGACGCTAAGTACTTCATCAAAGAGTATCACTACATTAGAGATACATCGGCGA 1589
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1492 CAATCCTCGATGCTAAGTACTTCATCAAAGAGTACCACTACATTAGGGATACATCGGCCA 1551
Query 1590 AAACGTTACACTTAGATCGAGGGGAAGAA-TTAGGAATATTCTGCACGATCGCGTGGAAA 1648
|||| ||||| |||||||||||| || || ||||||||||||||||||||||| ||||||
Sbjct 1552 AAACATTACATTTAGATCGAGGG-AACAAATTAGGAATATTCTGCACGATCGCATGGAAA 1610
Query 1649 TGTCATCATCATAACAACGAGAT-AAAAGTTCCTCCACAAGAATGCATTGTAGTGAAGAA 1707
|||||||||||||| |||||||| |||| ||||||||||||||||||| || || |||||
Sbjct 1611 TGTCATCATCATAATAACGAGATTAAAA-TTCCTCCACAAGAATGCATAGTGGTTAAGAA 1669
Query 1708 AGATGCAACATTGAGTGAAGTGTACGGAGAGGCAGAAAGAGTGTTTAGAGATATCTATTG 1767
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1670 AGATGCAACATTGAGTGAAGTGTATGGAGAGGCAGAAAGAGTGTTTAGAGAGATCTATTG 1729
Query 1768 GGAACTAAGAGACGTCGTGGTGGAGTCAGTGGTGGGTGGTCAAATAGAGATCACAAGGGT 1827
|||||||||||||||||||||| ||||| ||| | |||||||| |||||||||||||||
Sbjct 1730 GGAACTAAGAGACGTCGTGGTGCAGTCACTGGCAGATGGTCAAAGAGAGATCACAAGGGT 1789
Query 1828 CGATGAAATGGCC-T--TGAATGGGAATAAGGGATTGGTGTTAGAAGGGAACGTAGGAAT 1884
||||||||||||| | ||||| ||||||| |||||||||||||||||||| ||||||||
Sbjct 1790 CGATGAAATGGCCATGATGAATTGGAATAAAGGATTGGTGTTAGAAGGGAATGTAGGAAT 1849
Query 1885 GATGATGAACATTGAAGTGACGAAATGTTATGAAGATGATGATAAAAAGAAGGATAAGAG 1944
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1850 GATGATGAACATTGAAGTGATGAAATGTTATGAAGATGATGATAAAAAGAAGGATAAGAG 1909
Query 1945 AATAGAGTGTGAGTGTGGAGCAACGGAAGAAGATGGAGAGAGAATGGTGTGTTGTGATAT 2004
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1910 AATTGAGTGTGAGTGTGGAGCAAAGGAAGAAGATGGAGAGAGAATGGTGTGTTGTGATAT 1969
Query 2005 TTGTGAAGTATGGCAACACACAAGGTGTGTTGGTGTTCAACACAATGAGGAAGTGCCTCG 2064
| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1970 ATATGAAGTATGGCAACACACAAGGTGTGTTGGCGTTCAACACAATGAGGAAGTTCCTCG 2029
Query 2065 CATTTTTCTTTGTCAAAGTTGTGATCAACATCTTATTCCTCTCTCTTTTTTACCCTAAAT 2124
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 2030 CATTTTTCTTTGTCAAAGTTGTGACCAACATCTTATTCCTCTCTCTTTTTTACCTTAAAC 2089
Query 2125 CATTCAT 2131
|||||||
Sbjct 2090 CATTCAT 2096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579651160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5