BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22270.1

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489077 jgi|Araly1|489077|fgenesh2_kg.6__2211__AT5G22270.1         658    0.0  


> Ahg489077 jgi|Araly1|489077|fgenesh2_kg.6__2211__AT5G22270.1
Length=544

 Score =  658 bits (356),  Expect = 0.0
 Identities = 447/488 (92%), Gaps = 17/488 (3%)
 Strand=Plus/Plus

Query  44   ACTACTAGTCTTCACCAAGAATAATATATCAACACACATAGTATACTCTTCTTGGAAGGC  103
            |||||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||
Sbjct  1    ACTACTAGTCTTTACCAAGAATAATATATCAACATACATAG--TACTCTTCTTGGAAGGC  58

Query  104  AAGGAACATGAATCAAGAAGCTGCGAGTAACCTTGGACTTGATCTGAAACTAAATATTTC  163
            ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  59   AAGGAACATGAATCACGAAGCTGCGAGTAACCTTGAACTTGATCTGAAACTAAATATTTC  118

Query  164  ACCGTCGTTGGATTCATCTTTGCTCACTGAGAGTTCATCGTCATCGTTATGCTCGGAGGA  223
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  ACCATCGTTGGATTCATCTTTGCTCACTGAGAGTTCATCGTCATCGTTATGCTCGGAGGA  178

Query  224  AGCTGAGGGTGGAGGAGGAGAGGCTAAATCAATGGTGGTCGTTGGCTGCCCTAATTGCAT  283
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  179  AGCTGAGGGTGGAGGAGGAGAGGCTAAATCAATGGTGGTCGTTGGTTGCCCTAATTGCAT  238

Query  284  CATGTACATCATCA-CTTCTTTAGAGAATGACCCTAGATGCCCTAGATGCAACAGCCATG  342
            |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  239  CATGTACATCATCATCT-CTTTAGAGAGTGACCCTAGATGCCCTAGATGCAACAGCCATG  297

Query  343  TTTTGCTTGATTTTCTCACAGGAAACCATAGCAAGAAGAGCACTAGTTaaaaaaaaaaat  402
            ||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| 
Sbjct  298  TTTTGCTTGATTTTCTCACAGGAAACCATAGCAAGAAGAACACTAATTAAGAAAAAAAAC  357

Query  403  aaaaaaaaaaTACATAATATTAAATTAAGGATGttcttttatttttctttcttttttctt  462
            |||| ||||   || ||| | ||   ||   |||||||||  ||| ||||||||||| | 
Sbjct  358  AAAACAAAA---CA-AAT-T-AAG--AA---TGTTCTTTTCCTTT-CTTTCTTTTTT-TA  404

Query  463  ttcCTTAATTTGTTGCCACATTTATTGATAGTTTGAATTAATCCACAATGAACGGATATG  522
                  ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct  405  AAAAAAAATTTGTTGCCACATTTATTGATAGTTTGAATTAATCTACGATGAACGGATATG  464

Query  523  TTCATAAA  530
            ||||||||
Sbjct  465  TTCATAAA  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23674331457


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5