BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22280.3
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489079 jgi|Araly1|489079|fgenesh2_kg.6__2213__AT5G22280.1 488 3e-137
Ahg484844 jgi|Araly1|484844|fgenesh2_kg.5__836__AT3G44280.1 147 2e-34
> Ahg489079 jgi|Araly1|489079|fgenesh2_kg.6__2213__AT5G22280.1
Length=708
Score = 488 bits (264), Expect = 3e-137
Identities = 305/324 (94%), Gaps = 5/324 (2%)
Strand=Plus/Plus
Query 537 AGATCATCTTGTCACAAGAGAGACATATCCAGAGGCTAAACGACCTTGTACGAAGTCTTC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 AGATCATCTTGTCACAAGAGAGACATATCCAGAGGCTAAACGACCTTGTACGAAGTCTTC 446
Query 597 AAATGCAGTTACAGCGATGCAAAGGAGAGAACGAGACACGAAACGCCACTGAAACCTCCC 656
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 447 AACTGCAGTTACAGCGATGCAAAGGAGAGAACGAGACACGAAACGCTACTGAAACCTCCC 506
Query 657 ATAATAA-CAAACAGTTCATTGAGCTCGAGAGGAAACACATCGTGGAAGACTAGTATTTC 715
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 ATC-TAAACAAACAGTTCATTGAGCTCGAGAGGAAACACATCGTGGAAGACTAGTATTTC 565
Query 716 CTCCGGT-T-ACATCAATTCTAATAAATAACCCAAATGGTACGTAAAAACTGTTGTAATT 773
||||| | | ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 CTCCGTTATTACAACAGCTCTAATAAATAACCCAAATGGTACGTAAAAACTGTTGTAATT 625
Query 774 TACTTTTGTTGTGTTAAAAACCTTGCTGATGTTTTGATTAGAAGGATGATTTACTTTATT 833
|||||||||||||||| || |||||| |||| ||||||||||||||||| ||||||| ||
Sbjct 626 TACTTTTGTTGTGTTAGAA-CCTTGCCGATGATTTGATTAGAAGGATGAATTACTTTGTT 684
Query 834 CACGTGTAAGATTGAGATATTTAA 857
|| | |||||||||||||||||||
Sbjct 685 CATGAGTAAGATTGAGATATTTAA 708
Score = 479 bits (259), Expect = 2e-134
Identities = 355/398 (89%), Gaps = 20/398 (5%)
Strand=Plus/Plus
Query 10 TCTCGCCGCCATTAAACCTCTGCTTT-TGTTTCTTTCTCTCTTCTTCTATACGAG-AACC 67
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |
Sbjct 1 TCTAGCCGCCATTAAACCTCTGCTTTGCGTTTCTTTCTCTCTTCTTCTATACGAGAAATC 60
Query 68 CA---TTTTGG-AGAAGTCAAGTTTCCTCAATACTCCGTCAAGCCGATTTTATTGATCTC 123
|| |||||| ||||| ||||| ||||| |||||||| ||||||||||||| ||
Sbjct 61 CATTTTTTTGGTAGAAGACAAGTCGCCTCACTACTCCGTTAAGCCGATTTTATCGA--AA 118
Query 124 GATCAGTT-TCG-TCAATTT-TTCCGGTTTAAGAAACCCTAGAAAAGCTGATGATTCGAT 180
|||| || ||| ||| ||| || | |||||||| ||||||||||||||||||||||||
Sbjct 119 GATC--TTCTCGATCAGTTTCTT-CAATTTAAGAAGCCCTAGAAAAGCTGATGATTCGAT 175
Query 181 AATGAAGTTTGATTTCACTGTGATAA-ATCGATCTGTTTTGTAAGAGCTGA-ATAG-AAA 237
|||||||||||||||||||||| || |||||||| | || ||||| | |||| |||
Sbjct 176 AATGAAGTTTGATTTCACTGTG-CAACTTCGATCTG-TAAGTTGGAGCT-AGATAGAAAA 232
Query 238 ATGTCGAGGCCGATCATGCTAGTCTTTCTTCTGGTTATACTTATAGTCACTTCTCAGTTT 297
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 233 ATGTCGAGGCCGATCATGCTCGTCTTTCTTCTGGTTATACTTATAGTCACTTCTCAGTTT 292
Query 298 GAATGGAGGCAACCACTTCTTGAGCTTGATGCAGCTCCTAGCTTGTCTCAGAAACATCAG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 GAATGGAGGCAACCACTTCTTGAGCTTGATGCAGCTCCTAGCTTGTCTCAGAAACATCAG 352
Query 358 CAAATTGCAAAGAGGGAAGAAGCTGTCAAGGAGAAGAT 395
|||||||| |||||||||||||||||||||||||||||
Sbjct 353 CAAATTGCTAAGAGGGAAGAAGCTGTCAAGGAGAAGAT 390
> Ahg484844 jgi|Araly1|484844|fgenesh2_kg.5__836__AT3G44280.1
Length=631
Score = 147 bits (79), Expect = 2e-34
Identities = 143/174 (82%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 537 AGATCATCTTGTCACAAGAGAGACATATCCAGAGGCTAAACGACCTTGT-ACGAAGTCTT 595
|||||||| | ||||||||||||||||||||||||||||| || ||||| | || |||||
Sbjct 397 AGATCATCATATCACAAGAGAGACATATCCAGAGGCTAAATGAGCTTGTCAGGA-GTCTT 455
Query 596 CAAATGCAGTTACAGCGATGCAAAGGAGAGAACGAGACACGAAACGCCACTGAAACCTCC 655
||| ||||||| | || |||||| |||||||| | ||| | ||| ||||| ||| ||
Sbjct 456 CAATTGCAGTTGCTGCAATGCAAGGGAGAGAATGTGACCCAAAATGCCACCAAAAGCTAT 515
Query 656 CATAATAA-CAAACAGTTCATTGAGCTCGAGAGGAAACACATCGTGGAAGACTA 708
||| ||| |||||| ||||||||| |||| |||||||| ||| |||||| |||
Sbjct 516 CATC-TAAACAAACAATTCATTGAGGTCGAAAGGAAACAAATCCTGGAAGGCTA 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34310625300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5