BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22290.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941731 jgi|Araly1|941731|scaffold_602275.1 1459 0.0
Ahg347510 jgi|Araly1|347510|fgenesh1_pg.C_scaffold_5000902 436 1e-121
Ahg936468 jgi|Araly1|936468|scaffold_500659.1 215 7e-55
Ahg923034 jgi|Araly1|923034|scaffold_104315.1 215 7e-55
> Ahg941731 jgi|Araly1|941731|scaffold_602275.1
Length=1044
Score = 1459 bits (790), Expect = 0.0
Identities = 945/1019 (93%), Gaps = 13/1019 (1%)
Strand=Plus/Plus
Query 175 AGGATACGGCGGCGTCGA-TGGAAGCGTCGACGGTGTTTCCTGGGTTTAAATTCTCGCCG 233
||| |||||||||||| | | ||||||||||||||||||||||||||||| || ||||||
Sbjct 27 AGGCTACGGCGGCGTC-AGTAGAAGCGTCGACGGTGTTTCCTGGGTTTAAGTTTTCGCCG 85
Query 234 ACGGATGTGGAGTTGATTTCGTATTACCTGAAGCGGAAGATGGATGGCTTGGAGAGGTCC 293
|| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 86 ACTGATGTTGAGCTGATTTCGTATTACTTGAAGCGGAAGATGGATGGCTTGGAGAGGTCC 145
Query 294 GTTGAGGTTATACCGGAC-CTTGAGATTTACAATTTCGAGCCTTGGGATTTACCCGATAA 352
|||||| |||||||| || | |||||||||||||||||||||||||||||| ||||||||
Sbjct 146 GTTGAGATTATACCGAACGC-TGAGATTTACAATTTCGAGCCTTGGGATTTGCCCGATAA 204
Query 353 GTCGATTGTGAAATCTGATAGCGAGTGGTTCTTCTTCTGTGCGCGTGGGAAAAAGTATCC 412
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 205 GTCGATTGTGAAATCTGATAGCGAATGGTTCTTCTTCTGTGCCCGTGGGAAAAAGTATCC 264
Query 413 ACATGGTTCACAGAACAGGAGAGCAACGAAGATGGGATACTGGAAAGCAACTGGGAAAGA 472
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 265 ACATGGGTCACAGAACAGGAGAGCAACGAAGATGGGATATTGGAAAGCAACTGGGAAAGA 324
Query 473 GCGTGATGTGAAGTCTGGTTCTGAGGTCATTGGAACAAAGAGGACGCTTGTTTTCCATAT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GCGTGATGTGAAGTCTGGTTCTGAGGTCATTGGAACAAAGAGGACGCTTGTTTTCCATAT 384
Query 533 TGGTCGTGCACCAAAAGGCGAAAGAACTGACTGGATTATGCACGAGTACTGCGTGAAAGG 592
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 385 TGGTCGTGCACCAAAAGGTGAAAGAACTGACTGGATTATGCACGAGTACTGCATGAAAGG 444
Query 593 AGTATCTCTGGATGATGCTATGGTTGTTTGCCGGGTTAGGAGGAACAAAGAATA-CAATA 651
||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 445 AGTTTCTCTGGATGATGCTATGGTTGTTTGCCGGGTTAGGAGGAACAAAAAATATCAA-A 503
Query 652 GTGGTACAAGTCAGAAGGCACCAAAGCCAAA-TTCATCAGCCGAGAAGCATGCGAAAGTC 710
|||||| |||||||||||||| ||||||| || | || ||||||||| || | |
Sbjct 504 GTGGTATGAGTCAGAAGGCACCCGAGCCAAAATT-AGCACCCGAGAAGCGCGCCATCTTG 562
Query 711 CAAAATGGCGCTACGAGTTCAGGGAGCCCGTCTGATTGGGACAACTTGGTTGATTTTTAC 770
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CAAAATGGTGCTACTAGTTCAGGGAGCCCGTCTGATTGGGACAACTTGGTTGATTTTTAC 622
Query 771 CTAGCAGGTGAATCAGGGGAGAAACTACTC-GCTGAGATGGCAGAGTCATCAGAAAATCT 829
|||||||||||||||| ||||||||| ||| | ||||||||||| ||||||||||||||
Sbjct 623 CTAGCAGGTGAATCAGAGGAGAAACTGCTCTGG-GAGATGGCAGAATCATCAGAAAATCT 681
Query 830 ACAGGTGGATAATGACGAGGATTTCTTTGCGGATATCCTAAGAGACGAAATCATCAATCT 889
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 682 ACAGGTGCATAATGACGAGGATTTATTTGCGGATATCCTAAGAGACGAAATCATCAATCT 741
Query 890 CGATGAAGCGGTGATGACAGGGAACACACCAAACGAAGTGCCAACACTAGAATCAGCATC 949
||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||
Sbjct 742 TGATGAAGCGGTGATGACCGGTAACACACCAAACGAAATCCCAACACTAGAATCAGCATC 801
Query 950 AATGGAGATAAGGGTACTTCCTTTACCAAACATGATAGACAAACAAATGTCATCACTGTT 1009
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 802 AATGGAGATAAGGGTACTTCCCTTACCAAACATGATAGACAAACAAATGTCATCACTGTT 861
Query 1010 AGAGGAAAGACCATCACAGAAGAAGAAAGGAAAAGACGCCACGGAATCATTGTCGAGCTG 1069
|||||||||||||||||| |||| | |||||| ||| ||| |||||||||||||| |||
Sbjct 862 AGAGGAAAGACCATCACAAAAGATGGAAGGAACAGATACCATGGAATCATTGTCGAACTG 921
Query 1070 CTTCGTGGGTTTATACTCGATCAAATCAGTGAACA-AGGCACGATGGGATGTTATTATAG 1128
|||||||||| ||||||||||||| ||||||||| || ||||||||||||||||||||
Sbjct 922 CTTCGTGGGTATATACTCGATCAAGTCAGTGAACCGAG-CACGATGGGATGTTATTATAT 980
Query 1129 GTGTAGTGGCTCTGATAGCAATGTTGTTTTATCTAGAATAAGA-GGCTTATGGAAGTAG 1186
||||||| ||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 981 GTGTAGTAGCTCTGATAGCAATGTTGTTTTATCTAGAATAATAAGGTTTATGGAAGTAG 1039
> Ahg347510 jgi|Araly1|347510|fgenesh1_pg.C_scaffold_5000902
Length=996
Score = 436 bits (236), Expect = 1e-121
Identities = 654/851 (77%), Gaps = 47/851 (6%)
Strand=Plus/Plus
Query 202 CGACGGTGTTTCCTGGGTTTAAATTCTCGCCGACGGATGTGGAGTTGATTTCGTATTACC 261
|||||| ||| ||||| || |||||||| ||||||||| | || | || || ||||||
Sbjct 23 CGACGGCGTTCCCTGGCTTCAAATTCTCACCGACGGATATCGAACTCATATCTTATTACT 82
Query 262 TGAAGCGGAAGATGGATGGCTTGGAGAGGTCCGTTGAGGTTATACCGGACCTTGAGATTT 321
|||| |||||||||||||| ||||||| |||||||||| ||||||| || | || ||||
Sbjct 83 TGAAACGGAAGATGGATGGTTTGGAGAAGTCCGTTGAGATTATACCTGAAGTCGATATTT 142
Query 322 ACAATTTCGAGCCTTGGGATTTACCCGATAAGTCGATTGTGAAATCTGATAGCGAGTGGT 381
| || ||||||||||||||||| || |||||||| || || ||||| ||||| || ||||
Sbjct 143 ATAACTTCGAGCCTTGGGATTTGCCTGATAAGTCCATCGTTAAATCGGATAGTGAATGGT 202
Query 382 TCTTCTTCTGTGCGCGTGGGAAAAAGTATCCACATGGTTCACAGAACAGGAGAGCAACGA 441
||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||| |
Sbjct 203 TCTTCTTCTGTGCTCGTGGTAAAAAGTATCCCCATGGTTCACAGAACAAAAGAGCAACCA 262
Query 442 AGATGGGATACTGGAAAGCAACTGGGAAA-GAGCGTGATGTGAAGTCTG-GTTCTGAGGT 499
||||||||| |||||||| || ||||| || ||| |||||||||| | ||||||||||
Sbjct 263 GGATGGGATATTGGAAAGCCAC-AGGAAAGGAACGTAATGTGAAGTC-GAGTTCTGAGGT 320
Query 500 CATTGGAACAAAGAGGACGCTTGTTTTCCATATTGGTCGTGCACCAAAAGGCGAAAGAAC 559
|||||||||||||||||||||||| ||||| ||||| || || |||||||| | ||| ||
Sbjct 321 CATTGGAACAAAGAGGACGCTTGTATTCCACATTGGCCGCGCGCCAAAAGGTGGAAGGAC 380
Query 560 TGACTGGATTATGCACGAGTACTGCGTGAAAGGAGTATCTCTGGATGATGCTATGGTTGT 619
|| ||||||||||| ||||| ||| ||| |||||||| ||||||| | || |||| |
Sbjct 381 GGAATGGATTATGCATGAGTATTGCATGATTGGAGTATCACTGGATGCT-CT--GGTTAT 437
Query 620 TTGCCGGGTTAGGAGGAACAAAGAATA-CAATAGTGG-TACAAGTCAGAAGGCACCAAAG 677
|||||| |||||||||| | |||| ||| | || ||||| ||| || ||||| ||
Sbjct 438 TTGCCGACTTAGGAGGAATACTGAATTTCAAG-G-GGCTACAATTCAAAATCCACCACAG 495
Query 678 CCAAATTCATCAGCC-GAGAAGCATGCGAAAG-TC-CAAAATGGCGCTACGAGTTCAGGG 734
|||| || ||| | | || |||| ||||| | || |||| |||| || ||
Sbjct 496 CCAAGTTTATC-GTCTGACAAGCC--CGAAAACTTGCAGAATGAAGCTATT--TT-AGAA 549
Query 735 AGCCCGTCTGATTGGGACAACT-TGGTTGATTTTTACCTAGCAGGTGAATCAGGGGAGAA 793
|| |||| |||||| || | |||||||||||||| || || |||| |||||| || |
Sbjct 550 AGTATTTCTGGTTGGGAAAA-TATGGTTGATTTTTACTTATCAAGTGAGTCAGGGCAGGA 608
Query 794 ACTACTC-GCTGAGATGGCAGAGTC---A---TC---AGAAAATCTACAGGTGGATAATG 843
|||||| | ||| || ||||| || | || | |||||| |||||| || ||
Sbjct 609 ACTACTAAG-TGAAATAGCAGAATCTTCACAATCTTCACAAAATCCACAGGTTCCTAGTG 667
Query 844 ACGAGGATTTCTTTGCGGATATCCTAAGAGACGAAATCA-TCAATCTCGATGAAGCGGTG 902
| || ||||||| |||||||||||| || || ||||| | | || || ||||| ||| |
Sbjct 668 AAGAAGATTTCTATGCGGATATCCTTAGGGATGAAAT-AGTAAAGCTAGATGATCCGGCG 726
Query 903 ATGACAGGG-AACACACCAAACGAA-GTGCCAACACTAGAATCAGCA-TCAATGGAG-AT 958
|| | ||| || |||| | | || || |||| || || ||| | || | | |
Sbjct 727 AT-ATTGGGTAATACACTGACC-AATGTCCCAAGGCTTCAAACAG-AGTCC-TACACCAC 782
Query 959 AAGGGTACTTCCTTTACCAAACATGATAGACAAACAAATGTCA-TCACTGTTAGAGGAAA 1017
||| |||| |||||||| ||||| |||||||||||||| || || ||| || || |||
Sbjct 783 AAGATTACTACCTTTACCTGACATGGTAGACAAACAAATG-CAATCCCTGCTACAG-AAA 840
Query 1018 G-ACCATCACA 1027
||||| |||
Sbjct 841 CTACCATTACA 851
> Ahg936468 jgi|Araly1|936468|scaffold_500659.1
Length=221
Score = 215 bits (116), Expect = 7e-55
Identities = 134/143 (94%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 895 AAGCGGTGATGACAGGGAACACACCAAACGAAGTGCCAACACTAGAATCAGCATCAATGG 954
||||||| |||| ||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 77 AAGCGGTAATGATGGGGAACACATCAAACGAAATCCCAACACTAGAATCAGCATCAATGG 136
Query 955 AGATAAGGGTACTTCCTTTACCAAACATGATAGACAAACAAATGTCATCACTGTTAGAGG 1014
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 AGATAAGGGTACTTCCCTTACCAAACATGATAGACAAACAAATGTCATCACTGTTAGAGG 196
Query 1015 AAAGACCATCACAGAAGAAGAAA 1037
|| |||||||||| |||||||||
Sbjct 197 AATGACCATCACAAAAGAAGAAA 219
> Ahg923034 jgi|Araly1|923034|scaffold_104315.1
Length=221
Score = 215 bits (116), Expect = 7e-55
Identities = 134/143 (94%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 895 AAGCGGTGATGACAGGGAACACACCAAACGAAGTGCCAACACTAGAATCAGCATCAATGG 954
||||||| |||| ||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct 77 AAGCGGTAATGATGGGGAACACATCAAACGAAATCCCAACACTAGAATCAGCATCAATGG 136
Query 955 AGATAAGGGTACTTCCTTTACCAAACATGATAGACAAACAAATGTCATCACTGTTAGAGG 1014
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 AGATAAGGGTACTTCCCTTACCAAACATGATAGACAAACAAATGTCATCACTGTTAGAGG 196
Query 1015 AAAGACCATCACAGAAGAAGAAA 1037
|| |||||||||| |||||||||
Sbjct 197 AATGACCATCACAAAAGAAGAAA 219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5