BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22310.1
Length=1948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489082 jgi|Araly1|489082|fgenesh2_kg.6__2216__AT5G22310.1 2283 0.0
> Ahg489082 jgi|Araly1|489082|fgenesh2_kg.6__2216__AT5G22310.1
Length=1886
Score = 2283 bits (1236), Expect = 0.0
Identities = 1707/1920 (89%), Gaps = 89/1920 (5%)
Strand=Plus/Plus
Query 4 ACACTGTCTCCATCTTTCTTTCCTCTTCTTCAACATCTCTCTTCTCCCAAGAAAATAAAA 63
||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1 ACACTGTCTCCATCTCTCTTTCCTCTTCTTCCACATCTTTCTTCTCCCAAGAAAATAAAA 60
Query 64 CACAATTTCCCAGATTCAAAACTTCTTTTTCACAAATCACAACGTCTTCAAAGGGATCAA 123
||||||||||||||||||||||||| |||| | |||||||||||||||||| ||
Sbjct 61 CACAATTTCCCAGATTCAAAACTTC-TTTT------T--CAACGTCTTCAAAGGGATTAA 111
Query 124 GAATCTTAT-TACTCTTCTCTTCTTTTGCTTT--TAAGA-AGAAGTAAAAACATCATCTT 179
||||||| | | ||||||||||||||| ||| | | | | ||| |||||||||||| |
Sbjct 112 GAATCTT-TGT-GTCTTCTCTTCTTTTG-TTTAGTTACACA-AAG-AAAAACATCATCCT 166
Query 180 AACTTTCACTTTTTGTATTA----TCT-T-TCTCTTTCACTCACTTTAAAGTCTATTTAG 233
||||||| |||||||||||| ||| | ||||||| |||||||||||||||| || |
Sbjct 167 AACTTTCCCTTTTTGTATTATCTCTCTCTCTCTCTTTTACTCACTTTAAAGTCTCTTAAT 226
Query 234 AGATTCAAAAACAAAATCTTCCAGAAACTGCTTCTGATCTT-AGAAGATGACTCACTTCT 292
||||||||| ||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 227 AGATTCAAACACAAAATCTTCCAGAAACTGCTTCTGATCTTAAAAAGATGACCCACTTCT 286
Query 293 CCTAAAAAGCACCAATTTCAATC-CTAtttttttCTCTTGTTTTCCGGC--AAGATTTGG 349
||||||||| ||||||||||| | ||||||||||||||| |||||| | |||||||||
Sbjct 287 CCTAAAAAGTACCAATTTCAA-CACTATTTTTTTCTCTTCTTTTCCTTCAAAAGATTTGG 345
Query 350 T---AAAATTTTGTGTTCTGATTTGTTGTTTTGAATATCAACTATGGAACAACGGAAGAA 406
| |||| ||||| |||||| | ||| ||| ||||||| |||||||||
Sbjct 346 TAAAAAAAATTTGT-TTCTGA--T-TTG--TTG-------ACTATGG---AACGGAAGAG 389
Query 407 AGGTTGTAAGATCAGGAAGAGAGGTGGTTCTTCCTCTTCTTCTTCTTCACTTGCTCGTCG 466
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 390 AGGTTGTAAGATCAGAAAGAGAGGTGGTTCTTCCTCTTCTTCTTCTTCTCTTGCTCGCCG 449
Query 467 AAACCGCTTCAAACGTGCAATTTTCGCCGGGAAAAGAGCCGCTCAAGACGA--------- 517
|||||| |||||||| |||||||||||||||||||||| |||||||| ||
Sbjct 450 AAACCGTTTCAAACGCGCAATTTTCGCCGGGAAAAGAGTTGCTCAAGATGATGGTGGTGG 509
Query 518 ---CGGTGGCTCAGGAACTCCTGTTAAGTCCATCACCGCCGCTAAAACTCCAGTTCTGTT 574
|||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 510 TGGCGGTGGCTCAGGAACTCCGGTTAAGTCCATCACCGCCGCTAAAACTCCTGTCCTGTT 569
Query 575 ATCGTTTTCGCCGGAAAATCTTCCTATAGATCATCATCAATTGCAGAAAAGCTGC-GTGT 633
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | || |
Sbjct 570 ATCGTTTTCGCCGGAAAATCTTCCTATAGATCATCATCAATTACAGAAAAGCT-CTGTCT 628
Query 634 CGGCGAGAAAGCTAGCTGCGACGCTGTGGGAAATCAACGACGACGCAGACCCTCCGGTAA 693
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 629 CTGCGAGAAAGCTAGCTGCGACGCTATGGGAAATCAACGACGACGCAGACCCTCCTGTAG 688
Query 694 ATTCTGATAAAGATTGCTTGAGAAGCAAGAAACCATCGAGATACAGAGCGAAGAAATCAA 753
|||| |||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 689 ATTCCAATAAAGATTGCTTGAGAAGCAAGAAACCGTCGAGACACAGATCGAAGAAATCAA 748
Query 754 CAGAGTTCTCTTCCATTGATTTCCCGCCACGATCATCCGATCCGATTTCTCGTCTAAGCT 813
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 749 CAGAGTTATCTTCCATTGATTTCCCGCCAAAATCATCCGATCCGATTTCTCGTCTAACCT 808
Query 814 CAGAGAGAATCGATCTCTGTGACGATATGA-TTCGTAGAAGATCAACAAATCCTCAGAAA 872
||||||||||||||||| |||| ||| | | ||||||||||| || ||||| |||||||
Sbjct 809 CAGAGAGAATCGATCTCCGTGAAGAT-TTAGTTCGTAGAAGACCAGGAAATCATCAGAAA 867
Query 873 TTAAACCCAATTGAATACAAAATCATTGGCGCAAACTCGGTGAAAACTCGTTTCAAGAAT 932
|| ||| ||||||| |||||| ||||| | |||||||| ||||||||||||| ||||||
Sbjct 868 CTACACCTAATTGAACACAAAACCATTGTCACAAACTCGCTGAAAACTCGTTTGAAGAAT 927
Query 933 GTCAGTGACGGATTAACAACGTCTAAAGAACTGGTAAAGGTATTAAAAAGGATCGGTGAG 992
|||||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 928 GTCAGTGAAGGATTAACAACGTCTAAAGAACTCGTTAAGGTTTTAAAAAGGATCGGTGAG 987
Query 993 CTCGGAGATGATCACAAGACAGCAAGCAATCGTTTGATCTCTGCTTTGTTATGTGAACTA 1052
|| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 988 CTGGGAGATGATCACAAGACAGCAAGCAATCGTTTGATCTCTGCTCTGTTATGCGAACTA 1047
Query 1053 GACAGAGCAAGATCTTCACTAAAGCATCTAATGAGTGAATTAGATGAAGAGGAAGAGGAG 1112
|||||||||||||||| |||||||||| ||||||||||| |||| ||||| ||||||
Sbjct 1048 AACAGAGCAAGATCTTCTTTAAAGCATCTGATGAGTGAATTTGATGCGGAGGAGGAGGAG 1107
Query 1113 AAGCGGAGGTTGATAGAGAGTCTACAAGAAGAGGCGATGGTTGAGAGAAAACTCCGGCGA 1172
|||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| |
Sbjct 1108 AAGCGGAGGTTGATAGAGAGGCTACAAGAAGAAGCGGTGGTTGAGAGAAAACTCCGGCAA 1167
Query 1173 AGAACAGAGAAGATGAATAGAAGATTAGggagagagctcacggaggctaaagaaacagag 1232
||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1168 AGAACGGAGAAGATGAACAGAAGATTAGGGAGAGAGCTCGCGGAGGCTAAAGAAACAGAG 1227
Query 1233 aggaagatgaaggaggagatgaaaagagagaagagagctaaagatgttcttgaagaggTT 1292
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1228 AGGAAGATGAAGGAGGAGATGGAGAGAGAGAAGAGAGCTAAAGATGTTCTTGAAGAGGTT 1287
Query 1293 TGTGATGAGCTAACTAAAGGAATCGgagatgataagaaggagatggagaaagagagagag 1352
||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1288 TGTGATGAGCTCGCGAAAGGAATCGGAGATGATAAGAAGGAGATAGAGAAAGAGAGAGAG 1347
Query 1353 atgatgcatatagctgatgttttgagggaagagagagTTCAAATGAAGCTTACGGAGGCG 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 ATGATGCATATAGCTGATGTTTTGAGGGAAGAGAGAGTTCAAATGAAGCTTACGGAGGCG 1407
Query 1413 AAGTTTGAGTTCGAAGATAAATACGCCGCCGTGGAGCGGCTGAAGAAGGAGCTCCGGCGG 1472
|| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||| ||
Sbjct 1408 AAATTTGAGTTCGAGGATAAATACGCTGCCGTGGAGCGGCTGAAGGTGGAGCTCCGGAGG 1467
Query 1473 GTTTTGGATGGTGAAGAAGGAAAAGGGTCGTCGGAGATTCGTAGGATTTTGGAGGTGATT 1532
||||| ||||||||||||||||| |||||||||||||||||| ||||||||||| | ||
Sbjct 1468 GTTTTAGATGGTGAAGAAGGAAATGGGTCGTCGGAGATTCGTCGGATTTTGGAGATAATG 1527
Query 1533 GATGGTTCTGGTTCTGATGATGATGAGGAGAGTGATCTTAAGTCCATTGAGTTGAACATG 1592
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1528 GACGGTTCTGGTTCTGATGATGAGGAGGAGAGTGATCTTAAGTCGATTGAGTTGAATATG 1587
Query 1593 GAGAGTGGTAGTAAATGGGGTTATGTTGATAGCCTGAAAGATCGTCGGAG--A-T----- 1644
|||||||| ||||| |||||||||||||| ||| || ||||| ||||| | |
Sbjct 1588 GAGAGTGGAAGTAAGTGGGGTTATGTTGAAAGCGGGAGAGATCACCGGAGGGAATCAAGA 1647
Query 1645 TT-GATGGCTCCGGCG--G----Cga---tgatgatgatgatgat------ccggtggag 1688
|| | ||||||||||| | ||| |||||||||||||||| || ||||||
Sbjct 1648 TTTGGTGGCTCCGGCGATGAGGACGACGATGATGATGATGATGATGATGATCCTGTGGAG 1707
Query 1689 aagagatcagtgattgttgagaatggtgagagagatgagTCTTTGAAGACTTTGAGAGAT 1748
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1708 AAGAGATCAGTGATTGTTGAGAATGGGGAGAGAGATGAGTCTTTGAAGACTCTGAGAGAT 1767
Query 1749 TACATTGTTTCAAATGTTAGATGTATTGGTCCTTCATCGTCAGAGCAGTGGAATCATCGG 1808
|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 1768 TACATTGTTTCAAATGTTAGATGTGTCGGTCCTTCATCGTCGGAGCAGTGGAATCATCGG 1827
Query 1809 AATTTACCAAGCTCTGAGTTTGTGTAATCACCACCGCTAGCGCCGGCGAGGAAGAAAAAG 1868
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1828 AATTTACCAAGCTCTGAGTTTGTGTAATCACCACCGCTAGCGCCGGCGAGAAA-AAAAAG 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73209450890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5