BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22320.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489085 jgi|Araly1|489085|fgenesh2_kg.6__2219__AT5G22320.1 2065 0.0
> Ahg489085 jgi|Araly1|489085|fgenesh2_kg.6__2219__AT5G22320.1
Length=1385
Score = 2065 bits (1118), Expect = 0.0
Identities = 1307/1396 (94%), Gaps = 22/1396 (2%)
Strand=Plus/Plus
Query 38 AAGGAAGAAGACGAAGACGGCGATGAATTCGTTAACCGTTGAACAAGTATTGAAAGAGAA 97
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AAGGAAGAAGACGAAGACGGCGATGAATTCGTTAACCGTTGAACAAGTACTGAAAGAGAA 60
Query 98 GAAGACCAATGACCCAGATTCCGTCAAGGAACTTAATCTCGGCCATAAAGCTCTCACCGA 157
||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GAAGACCCATGACCCAGATTTCGTCAAGGAACTTAATCTCGGCCACAAAGCTCTCACCGA 120
Query 158 CGTGTCTTGTTTGAGCAAGTTCAAAAACTTGGAAAAGCTTGATCTTCGTTTCAACAATCT 217
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CGTGTCTTGTTTGAGCAAATTCAAAAACTTGGAGAAGCTTGATCTTCGTTTCAACAATCT 180
Query 218 -AACAGATCTTCAGGGACTCAAGTCTTGTGTGAACTTGAAATGGCTTTCAGTTGTGGAAA 276
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CAA-GGATCTTCAGGGACTCAAGTCTTGTGTGAACTTGAAATGGCTTTCAGTTGTGGAGA 239
Query 277 ACAAATTGCAAAGCTTAAATGGAATTGAAGCACTCACTAAGCTTACGGTGCTTAATGCTG 336
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 240 ATAAATTGCAAAGCTTAAAAGGAATTGAAGCACTCACTAAGCTTACGGTGCTAAATGCTG 299
Query 337 GAAAGAATAAGCTCAAATCCATGAATGAGATCTCTTCTCTTGTCAATTTACGGGCCTTGA 396
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 300 GAAAGAATCAGCTCAAATCCATGAATGAGATCTCTTCTCTTGTCAATTTGCGGGCATTGA 359
Query 397 TCTTGAATGACAATGAAATCTCCTCCATTTGCAAGCTTGATTTACTCAAAGACTTGAACA 456
| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 360 TTTTGAATGACAATGAAATCTCCTCCATTTGCAAGCTAGATCTACTGAAAGACTTGAACA 419
Query 457 GTCTCGTTCTTTCTAGGAACCCAATCAGTGAAATAGGTGACTCACTTTCAAAGTTGAAAA 516
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 GTCTCGTTCTTTCTAGGAACCCAATCAGTGAAATCGGTGACTCACTTTCAAAGTTGAAAA 479
Query 517 ACCTCTCCAAAATTTCTTTGTCTGACTGCAGAATAAAAGCTATTGGCTCTTCTCTCAAGT 576
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 ACCTCTCTAAAATTTCTTTGTCTGACTGCAGAATAAAAGCTATTGGTTCTTCTCTCAAGT 539
Query 577 CATGCTCTGATTTGAAAGAGCTGCGGCTCGCGAACAATGAAATCAAGGCTCTCCCAGCAG 636
||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct 540 CATGCTCTGATTTGAAAGAGCTGCGACTCGCGCACAATGAAATTAAGGCCCTCCCAGCAG 599
Query 637 AACTAGCAGTCAACAAAAGACTACTCAATTTGGATGTGGGAAACAATGTGATTACGCAAC 696
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 600 AACTAGCAGTCAACAAAAGACTACTGAATTTGGATGTGGGAAACAATATGATTACAAAAC 659
Query 697 TCTCTGGTTTAGAGGTTTTGGGTACACTATCTTGCTTGCGAAATCTGAATATTCGAGGAA 756
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 660 TCTCTGGTTTAGAGGTTTTGGGTACACTATCTTGCTTGCGAAACCTGAATATTCGAGGAA 719
Query 757 ACCCGATTTCTGATAACGATAAGTCAGCTAAGAAGGTGAGAACGTTGCTTCTCCCTTCAG 816
||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 ACCCGATCTCTGATAACGAGAAGTCAGCTAAGAAGGTGAGAACGTTGCTCCTCCCTTCAG 779
Query 817 TGAATGTATTCAACGCTCAACCCTTAGAAAAAAGCTCAAGGAATGCAAAGCATATTCGGC 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 TGAATGTATTCAACGCTCAACCCTTAGAAAAAAGCTCAAGGAATGCAAAGCATACCCGGC 839
Query 877 TTGATACCGATGATGAAACCTTTGATGC-CTATCACAATAAATCAGCAGAAGAGGAACAA 935
|||||||||||||||||| ||||||||| | ||||||| ||||||| |||||| ||||||
Sbjct 840 TTGATACCGATGATGAAAACTTTGATGCTC-ATCACAACAAATCAGGAGAAGAAGAACAA 898
Query 936 TCTaaagaagatcgaaaacgcaagaagagctctaagagaaataagtcagaagaagaagaa 995
|| ||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||
Sbjct 899 TCCAAAGAAGATCGAAAAAGCAATAAGAGCTCCAAGAGAAACAAGTCAGAAGAAGAAGAA 958
Query 996 gt-----c-aacaatgaggatcacaaaagcaagaagaagaagtctaagaGCAACACAAAT 1049
| | |||||||| |||||||| | ||||||||||||||||||||||||| |||||
Sbjct 959 GAAGAAGCCAACAATGATGATCACAAGACCAAGAAGAAGAAGTCTAAGAGCAACCCAAAT 1018
Query 1050 GTAGATCAAGTTGAAACAAAAAAGAAAGAAGAACATAAAGAGAAGACAATCCCAAGTAAC 1109
|||||||||||||||||| |||||||||||||||| ||| |||||| ||| | |||||||
Sbjct 1019 GTAGATCAAGTTGAAACAGAAAAGAAAGAAGAACAGAAACAGAAGAAAATTCAAAGTAAC 1078
Query 1110 AatgatgatgatgatgatgCTGAGAAGAAACAGAAAAGGGCTACTCCAAAGGAGGAACTC 1169
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AATGA--A-GATGATGATGCTGAGAAGAAACAGAAAAGGGCTACTCCAAAGGAGGAACTC 1135
Query 1170 GATGCTATAGATGATGCTGAAACCTCTTTCGCAGAAATCTTTTCCCGGGAAAATGTGCCA 1229
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1136 GATGCTATTGATGATGCTGAAACCTCTTTTGCAGAAATCTTTTCCCGGGAAAATGTGTCA 1195
Query 1230 AAGGGTTCT---GAAGACGGTATTGAGAAGAAGAAGAAAAGCAGCGTCCAAGAGACAGGT 1286
||||||||| | |||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 1196 AAGGGTTCTTCTGGTGACGGTATTGAGAAGAAGAAGAGAAGCAGTGTGCAAGAGACAGGT 1255
Query 1287 TTAGTAAAAGTGATAGATACTAAAGCTAACaagaagaagaagaagagtgaaaagaagcaa 1346
||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1256 TTAGTGAAAGTGATAGATACTAAAGCTAACAAGAAGAA-AAT-----TGAAAAGAAGCAA 1309
Query 1347 agcaagaGTGTAGTGATTGATCTTCCCATGGAGGTTGAGATCGGGTTAGGAGGAGAGTCT 1406
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1310 AGCAAGAGTGTAGTGATTGATCTTCCCATGGAAGTTGAGATCGGGTTAGGAGGAGAGTCC 1369
Query 1407 AAGTGGGAGTAAACTG 1422
||||||||||||||||
Sbjct 1370 AAGTGGGAGTAAACTG 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5