BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22330.1 Length=1730 Score E Sequences producing significant alignments: (Bits) Value Ahg941736 jgi|Araly1|941736|scaffold_602280.1 2305 0.0 > Ahg941736 jgi|Araly1|941736|scaffold_602280.1 Length=1420 Score = 2305 bits (1248), Expect = 0.0 Identities = 1367/1425 (96%), Gaps = 6/1425 (0%) Strand=Plus/Plus Query 99 ATCAAAGTAATTGTAGTTGACGGAGATGGAGAAAGTAAAGATTGAAGAAATTCAGTCCAC 158 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2 ATCACAGTAATTGTA---GACGGAGATGGAGAAAGTAAAGATTGAAGAAATTCAGTCCAC 58 Query 159 CGCTAAGAAACAACGGATTGCTACTCACACCCATATCAAAGGCCTTGGCCTCGAGCCAAC 218 |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 59 CGCTAAGAAACAGCGGATTGCTACTCACACCCATATCAAAGGTCTTGGCCTTGAGCCAAC 118 Query 219 TGGTATCCCTATAAAATTGGCAGCTGGATTTGTTGGTCAACTTGAGGCTAGAGAGGCAGC 278 ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 119 CGGTGTTCCTATAAAATTGGCGGCTGGATTTGTTGGTCAACTTGAGGCTAGAGAGGCAGC 178 Query 279 TGGTCTTGTAGTTGACATGATTAAGCAGAAGAAAATGGCGGGCAAGGCTCTTTTGCTTGC 338 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 179 TGGTCTTGTAGTGGACATGATTAAGCAGAAGAAAATGGCGGGTAAGGCTCTTTTACTTGC 238 Query 339 TGGACCTCCTGGAACTGGGAAAACAGCTTTGGCTCTTGGAATCTCTCAAGAGCTGGGAAG 398 ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 239 TGGACCTCCTGGAACCGGGAAAACAGCATTGGCTCTTGGAATTTCTCAAGAGCTGGGAAG 298 Query 399 CAAGGTTCCATTCTGTCCAATGGTTGGATCTGAGGTTTACTCATCAGAGGTTAAGAAAAC 458 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 299 CAAGGTTCCATTCTGTCCAATGGTTGGATCTGAGGTTTACTCATCAGAGGTCAAGAAAAC 358 Query 459 AGAGGTTCTCATGGAGAATTTTAGACGTGCCATTGGTCTACGTATCAAGGAAACCAAAGA 518 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 359 AGAGGTTCTCATGGAGAATTTTAGACGTGCCATCGGTCTACGTATCAAGGAAACCAAAGA 418 Query 519 AGTCTATGAAGGGGAGGTCACCGAGCTGTCACCAGAAGAAACTGAAAGCCTCACTGGAGG 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 AGTCTATGAAGGGGAGGTCACCGAGCTGTCACCAGAAGAAACTGAAAGCCTCACTGGAGG 478 Query 579 TTATGGTAAAAGCATCAGCCATGTTGTAATTACACTCAAGACAGTCAAAGGAACCAAACA 638 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 479 CTATGGTAAAAGCATCAGCCATGTTGTCATTACACTCAAGACAGTCAAAGGAACCAAACA 538 Query 639 TCTGAAATTGGATCCCACTATCTATGATGCCTTGATTAAGGAAAAGGTAGCTGTAGGAGA 698 |||||| ||||| |||||||| || |||||||||||||||||||||||||||||||| || Sbjct 539 TCTGAAGTTGGACCCCACTATATACGATGCCTTGATTAAGGAAAAGGTAGCTGTAGGTGA 598 Query 699 TGTAATCTATATCGAAGCAAACAGTGGAGCTGTCAAACGGGTAGGTAGAAGTGATGCTTT 758 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TGTTATCTATATCGAAGCAAACAGTGGAGCTGTCAAACGGGTAGGTAGAAGTGATGCTTT 658 Query 759 TGCCACTGAATTTGATCTGGAAGCAGAAGAATATGTTCCACTTCCCAAAGGAGAGGTCCA 818 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 659 TGCCACTGAATTCGATCTGGAAGCAGAAGAATATGTTCCACTTCCCAAAGGAGAGGTTCA 718 Query 819 CAAAAAGAAAGAGATAGTGCAGGATGTCACACTCCAAGATCTGGATGCAGCAAATGCTCG 878 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 719 CAAAAAGAAAGAAATAGTGCAGGATGTCACACTCCAAGATCTGGACGCAGCAAATGCTCG 778 Query 879 ACCTCAAGGTGGCCAGGATATACTTTCTTTGATGGGCCAAATGATGAAACCGCGGAAGAC 938 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 779 ACCTCAAGGTGGCCAGGATATACTTTCTTTGATGGGCCAAATGATGAAACCCCGGAAGAC 838 Query 939 TGAGATCACTGATAAGCTTCGGCAAGAAATTAACAAGGTTGTGAACCGATATATAGATGA 998 ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| Sbjct 839 TGAGATCACTGATAAGCTTAGGCAAGAAATTAACAAGGTTGTGAATCGTTATATAGATGA 898 Query 999 AGGTGTGGCAGAGCTTGTTCCAGGAGTTCTATTTATTGATGAGGTTCATATGCTTGATAT 1058 ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 899 AGGTGTGGCGGAGCTTGTTCCTGGAGTTCTATTTATCGATGAGGTTCATATGCTTGATAT 958 Query 1059 GGAGTGCTTCTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCTCCGATAGTGATATT 1118 ||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 959 GGAGTGCTTTTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCCCCCATAGTGATATT 1018 Query 1119 TGCAACAAATAGAGGTGTTTGCAACGTAAGAGGGACTGATATGCCCAGCCCCCATGGAGT 1178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 TGCAACAAATAGAGGTGTTTGCAACGTAAGAGGGACTGATATGCCCAGCCCCCATGGAGT 1078 Query 1179 CCCTATTGATCTATTAGATCGATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGA 1238 |||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1079 TCCTATTGACCTATTGGATCGATTGGTCATTATCCGGACTCAAATCTATGATCCCTCTGA 1138 Query 1239 AATGATCCAGATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATG 1298 |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1139 AATGATACAGATTATAGCCATTCGTGCGCAAGTTGAAGAACTAACGGTGGATGAAGAATG 1198 Query 1299 CTTGGTTCTACTTGGGGAGATTGGGCAAAGAACTTCACTAAGGCACGCTGTGCAGCTTCT 1358 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1199 CTTGGTTCTACTTGGGGACATTGGGCAAAGAACTTCACTAAGGCACGCTGTGCAGCTCCT 1258 Query 1359 GTCTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAGGCTGATAT 1418 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1259 GTCTCCTGCCAGCATTGTGGCGAAAATGAATGGACGTGACAATATTTGCAAGGCTGATAT 1318 Query 1419 AGAGGAAGTAACATCACTCTACTTGGATGCTAAATCTTCAGCAAAGCTTTTGCATGAGCA 1478 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1319 AGAGGAAGTAACATCACTCTACTTGGATGCCAAATCTTCAGCAAAGCTTTTGCATGAGCA 1378 Query 1479 ACAAGAAAAATACATCTCATGAGAAGAACACTAATCGCACATTTT 1523 |||||||||||||||||||| | | |||||||| ||||||||||| Sbjct 1379 ACAAGAAAAATACATCTCAT-A-A-GAACACTAGTCGCACATTTT 1420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64905777480 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5