BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22330.1
Length=1730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941736 jgi|Araly1|941736|scaffold_602280.1 2305 0.0
> Ahg941736 jgi|Araly1|941736|scaffold_602280.1
Length=1420
Score = 2305 bits (1248), Expect = 0.0
Identities = 1367/1425 (96%), Gaps = 6/1425 (0%)
Strand=Plus/Plus
Query 99 ATCAAAGTAATTGTAGTTGACGGAGATGGAGAAAGTAAAGATTGAAGAAATTCAGTCCAC 158
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 ATCACAGTAATTGTA---GACGGAGATGGAGAAAGTAAAGATTGAAGAAATTCAGTCCAC 58
Query 159 CGCTAAGAAACAACGGATTGCTACTCACACCCATATCAAAGGCCTTGGCCTCGAGCCAAC 218
|||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 59 CGCTAAGAAACAGCGGATTGCTACTCACACCCATATCAAAGGTCTTGGCCTTGAGCCAAC 118
Query 219 TGGTATCCCTATAAAATTGGCAGCTGGATTTGTTGGTCAACTTGAGGCTAGAGAGGCAGC 278
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGGTGTTCCTATAAAATTGGCGGCTGGATTTGTTGGTCAACTTGAGGCTAGAGAGGCAGC 178
Query 279 TGGTCTTGTAGTTGACATGATTAAGCAGAAGAAAATGGCGGGCAAGGCTCTTTTGCTTGC 338
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 179 TGGTCTTGTAGTGGACATGATTAAGCAGAAGAAAATGGCGGGTAAGGCTCTTTTACTTGC 238
Query 339 TGGACCTCCTGGAACTGGGAAAACAGCTTTGGCTCTTGGAATCTCTCAAGAGCTGGGAAG 398
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 239 TGGACCTCCTGGAACCGGGAAAACAGCATTGGCTCTTGGAATTTCTCAAGAGCTGGGAAG 298
Query 399 CAAGGTTCCATTCTGTCCAATGGTTGGATCTGAGGTTTACTCATCAGAGGTTAAGAAAAC 458
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 CAAGGTTCCATTCTGTCCAATGGTTGGATCTGAGGTTTACTCATCAGAGGTCAAGAAAAC 358
Query 459 AGAGGTTCTCATGGAGAATTTTAGACGTGCCATTGGTCTACGTATCAAGGAAACCAAAGA 518
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 359 AGAGGTTCTCATGGAGAATTTTAGACGTGCCATCGGTCTACGTATCAAGGAAACCAAAGA 418
Query 519 AGTCTATGAAGGGGAGGTCACCGAGCTGTCACCAGAAGAAACTGAAAGCCTCACTGGAGG 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGTCTATGAAGGGGAGGTCACCGAGCTGTCACCAGAAGAAACTGAAAGCCTCACTGGAGG 478
Query 579 TTATGGTAAAAGCATCAGCCATGTTGTAATTACACTCAAGACAGTCAAAGGAACCAAACA 638
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 479 CTATGGTAAAAGCATCAGCCATGTTGTCATTACACTCAAGACAGTCAAAGGAACCAAACA 538
Query 639 TCTGAAATTGGATCCCACTATCTATGATGCCTTGATTAAGGAAAAGGTAGCTGTAGGAGA 698
|||||| ||||| |||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 539 TCTGAAGTTGGACCCCACTATATACGATGCCTTGATTAAGGAAAAGGTAGCTGTAGGTGA 598
Query 699 TGTAATCTATATCGAAGCAAACAGTGGAGCTGTCAAACGGGTAGGTAGAAGTGATGCTTT 758
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGTTATCTATATCGAAGCAAACAGTGGAGCTGTCAAACGGGTAGGTAGAAGTGATGCTTT 658
Query 759 TGCCACTGAATTTGATCTGGAAGCAGAAGAATATGTTCCACTTCCCAAAGGAGAGGTCCA 818
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 659 TGCCACTGAATTCGATCTGGAAGCAGAAGAATATGTTCCACTTCCCAAAGGAGAGGTTCA 718
Query 819 CAAAAAGAAAGAGATAGTGCAGGATGTCACACTCCAAGATCTGGATGCAGCAAATGCTCG 878
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 719 CAAAAAGAAAGAAATAGTGCAGGATGTCACACTCCAAGATCTGGACGCAGCAAATGCTCG 778
Query 879 ACCTCAAGGTGGCCAGGATATACTTTCTTTGATGGGCCAAATGATGAAACCGCGGAAGAC 938
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 ACCTCAAGGTGGCCAGGATATACTTTCTTTGATGGGCCAAATGATGAAACCCCGGAAGAC 838
Query 939 TGAGATCACTGATAAGCTTCGGCAAGAAATTAACAAGGTTGTGAACCGATATATAGATGA 998
||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 839 TGAGATCACTGATAAGCTTAGGCAAGAAATTAACAAGGTTGTGAATCGTTATATAGATGA 898
Query 999 AGGTGTGGCAGAGCTTGTTCCAGGAGTTCTATTTATTGATGAGGTTCATATGCTTGATAT 1058
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 899 AGGTGTGGCGGAGCTTGTTCCTGGAGTTCTATTTATCGATGAGGTTCATATGCTTGATAT 958
Query 1059 GGAGTGCTTCTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCTCCGATAGTGATATT 1118
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 959 GGAGTGCTTTTCATACTTGAACCGTGCTCTTGAGAGCTCATTATCCCCCATAGTGATATT 1018
Query 1119 TGCAACAAATAGAGGTGTTTGCAACGTAAGAGGGACTGATATGCCCAGCCCCCATGGAGT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGCAACAAATAGAGGTGTTTGCAACGTAAGAGGGACTGATATGCCCAGCCCCCATGGAGT 1078
Query 1179 CCCTATTGATCTATTAGATCGATTGGTTATCATCCGGACTCAAATCTATGATCCCTCTGA 1238
|||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1079 TCCTATTGACCTATTGGATCGATTGGTCATTATCCGGACTCAAATCTATGATCCCTCTGA 1138
Query 1239 AATGATCCAGATTATAGCCATTCGTGCGCAAGTTGAAGAATTAACCGTGGATGAAGAATG 1298
|||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1139 AATGATACAGATTATAGCCATTCGTGCGCAAGTTGAAGAACTAACGGTGGATGAAGAATG 1198
Query 1299 CTTGGTTCTACTTGGGGAGATTGGGCAAAGAACTTCACTAAGGCACGCTGTGCAGCTTCT 1358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1199 CTTGGTTCTACTTGGGGACATTGGGCAAAGAACTTCACTAAGGCACGCTGTGCAGCTCCT 1258
Query 1359 GTCTCCTGCCAGCATTGTAGCGAAAATGAATGGCCGTGACAATATTTGCAAGGCTGATAT 1418
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1259 GTCTCCTGCCAGCATTGTGGCGAAAATGAATGGACGTGACAATATTTGCAAGGCTGATAT 1318
Query 1419 AGAGGAAGTAACATCACTCTACTTGGATGCTAAATCTTCAGCAAAGCTTTTGCATGAGCA 1478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1319 AGAGGAAGTAACATCACTCTACTTGGATGCCAAATCTTCAGCAAAGCTTTTGCATGAGCA 1378
Query 1479 ACAAGAAAAATACATCTCATGAGAAGAACACTAATCGCACATTTT 1523
|||||||||||||||||||| | | |||||||| |||||||||||
Sbjct 1379 ACAAGAAAAATACATCTCAT-A-A-GAACACTAGTCGCACATTTT 1420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64905777480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5