BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22350.1
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941738 jgi|Araly1|941738|scaffold_602282.1 2169 0.0
> Ahg941738 jgi|Araly1|941738|scaffold_602282.1
Length=1326
Score = 2169 bits (1174), Expect = 0.0
Identities = 1277/1327 (96%), Gaps = 6/1327 (0%)
Strand=Plus/Plus
Query 173 AATCGATAATC-TAACCGGCATGAGGCCAATCCTATTGCCGGATCCACCCAGTCTATCTA 231
|||||| |||| ||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 3 AATCGA-AATCGAAACCGGCATGAGGCCAATCCTGTTGCCGGATCCACCCAGTTTATCCA 61
Query 232 CCGGCGTCCCTGATATTTTCGAACAAGGCGGTTCCCATAACGTCGTCAGACGCGCCGTCG 291
||||||| |||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 62 CCGGCGTACCTGATATTTTCGAACAAGGCGGTGCTCAGAACGTCGTCAGACGCGCCGTCG 121
Query 292 TCATCGGAAACGGTTTCCCTGGCTCCGAGAATCAGTGTATCGGTCTCGTTCGTGCGCTCG 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 122 TCATCGGAAACGGTTTCCCTGGCTCCGAGAATCAGTGTATCGGTCTCGTTCGTGCCCTCG 181
Query 352 GCTTATCTGATAATCACCTTCTCTACCGAGTGACAAGGCCTAAAGGA-GGACTAAATGAG 410
||||| | ||||||||||| |||||||||||||| |||||||||||| ||| ||||||||
Sbjct 182 GCTTAGCCGATAATCACCTACTCTACCGAGTGACCAGGCCTAAAGGAGGGA-TAAATGAG 240
Query 411 TGGCTGCACTGGCTCCCAGTTGGTTTTCACAAGAAGTTGGACTTTATCCTCAGGCATATT 470
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGGCTGCACTGGCTTCCAGTTGGTTTTCACAAGAAGTTGGACTTTATCCTCAGGCATATT 300
Query 471 TACCTCTACTCCAGATTGATGCTTGGATCCAAACAAAGTAAATACATCTCATCTGTACCC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACCTCTACTCCAGATTGATGCTTGGATCCAAACAAAGTAAATACATCTCATCTGTACCC 360
Query 531 TCAGAGAATGGTGGTAATGTAGGTTTGGCCTCTATTCTAGAGGCTGATGTGAAGGGCATT 590
||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 361 TCAGAGAATGGTGCTAATGTAGGTTTGGCGTCTATTCTAGAGGCTGATGTGAAGAGCATT 420
Query 591 GTAAATTTGGCCCGTCAGACCTATGAAAAGGATGGCCCGTTGATCGTGATTGCATGTGGA 650
|| ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 421 GTGAATATGGCCCGTCAGACCTATGAAAAGGATGGCCCTTTGGTCGTGATTGCATGTGGA 480
Query 651 AGAGATACTATTTCTATTGCTAGCTCGATAAGACGTTTGGCTTCTGAAAACGTCTTCGTT 710
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 481 AGAGATACAATTTCTATTGCTAGCTCGATAAGGCGTTTGGCTTCGGAAAACGTCTTCGTT 540
Query 711 GTTCAGATACAACATCCTAGATCACATTTAAATAGGTTTGACATGGTGATCACGCCTCGT 770
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 GTTCAGATAAAACATCCTAGATCACATTTAAATAGGTTTGATATGGTGATCACGCCTCGT 600
Query 771 CACGACTACTATCCTCTAACACTCGAAGCGCAGGAGCAGGTCCCTAGATTTATGCGTAGT 830
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 601 CACGACTACTATCCTCTAACACTCGAAGCGCAAGAGCAGGTTCCTAGATTTATGCGTAGT 660
Query 831 TGGATAACTCCACGTGAACCTCCTCAGGATCATGTAGTCTTGACTACTGGAGCTCTACAC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGATAACTCCACGTGAACCTCCTCAGGATCATGTAGTCTTGACTACTGGAGCTCTACAC 720
Query 891 CAGATCGATTATGCCTCACTCCGTAAAGCAGCTAGTGCCTGGCATGATGAATTTGCTGCT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CAGATCGATTATGCCTCACTCCGTAAAGCAGCTAGTGCCTGGCATGATGAATTTGCTGCT 780
Query 951 CTTCCGAAGCCTTTAGTTGTGGTTAACATCGGCTGGCCTAGAAGTAACTGTCGGTATGGA 1010
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CTTCCAAAGCCGTTAGTTGTGGTTAACATCGGCTGGCCTAGAAGTAACTGTCGGTATGGA 840
Query 1011 GCAGACCTCGCAAAACAGCTAACAGACTCCCTTCTTAATGTCCTTGCTACCTGTGGAAGT 1070
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCAGACCTAGCAAAGCAGCTAACAGACTCCCTTCTTAATGTCCTTGCTACCTGTGGAAGT 900
Query 1071 GTCAGAATTACTCTTTCCTACAAAACCCCTGCAAAGGTTTCAAGAGTAATCTTCAAAGAA 1130
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GTCAGAATTGCTCTTTCCTACAAAACCCCTGCAAAGGTTTCAAGAGTAATCTTCAAAGAA 960
Query 1131 CTTGGAGATAACCCCAAAGTTTACATATGGAATGGCCAAGAACCAAATCCTTACATGGGG 1190
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 961 CTTGGAGATAACCCCAAAGTTTACATATGGAATGGCCAAGAACCAGATCCTTACATGGGA 1020
Query 1191 CATCTAGCTTGGGGTGATGCTTTTGTGGTGACAGCAGATTCAGTCAGTCTGATAAGCGAA 1250
|||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||
Sbjct 1021 CATCTAGCTTGGGGTGATGCCTTTGTGGTAACAGCAGATTCTGTCGGTCTGATAAGCGAA 1080
Query 1251 GCTTGTAGCACCGGGAAACCAGTGTACGTTGTTGGAGCCGATCACTGTAAATGGAAGATT 1310
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 GCTTGTAGCACTGGGAAACCAGTGTATGTTGTTGGAGCCGATCACTGTAAATGGAAGATT 1140
Query 1311 GCAGAATTCCAAAAGTCTTTGAGGGAGCGAGGAGTTGTCCGCTCATTTACAGGTTTCGAA 1370
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GCAGAATTCCAAAAATCTTTGAGGGAGCGAGGAGTCGTCCGCTCATTTACAGGTTTCGAA 1200
Query 1371 GATATGTCGGAAAGTTGGAGTTATCCGCCATTGAATGACACAGCAGAGGCAGCTACGAGA 1430
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 GATATGTCGGAAAGTTGGAGTTATCCGCCATTGAGTGACACAGCAGAGGCAGCTACGAGA 1260
Query 1431 ATACGGCGTGAATTGGCTGCACGTGGATGGAGTTTACGGTCTTGAATTA-TATACTCTTC 1489
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1261 ATACGGCGTGAATTGGCTGCACGTGGATGGAGTTTACGGTCTTGAAT-ACTATACTCTTC 1319
Query 1490 TTTGCTG 1496
|||||||
Sbjct 1320 TTTGCTG 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69514697125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5