BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22360.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941740 jgi|Araly1|941740|scaffold_602284.1 1133 0.0
> Ahg941740 jgi|Araly1|941740|scaffold_602284.1
Length=708
Score = 1133 bits (613), Expect = 0.0
Identities = 675/705 (96%), Gaps = 4/705 (1%)
Strand=Plus/Plus
Query 97 ATTGAAGATTCTCCGATGGCGATTGTCTATGCTGTTGTAGCGAGAGGTACCGTGGTATTA 156
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 6 ATTGAAGATTCTCCGATGGCGATTGTATATGCGGTTGTGGCGAGAGGTACGGTGGTATTA 65
Query 157 GCTGAATTCAGCGCCGTTACGGGAAACACAGGCGCCGTGGTGCGACGGATCCTCGAGAAG 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GCTGAATTCAGCGCCGTTACGGGAAACACAGGCGCCGTGGTGCGACGGATCCTCGAGAAG 125
Query 217 CTTTCACCGGAAATCTCCGATGAAAGACTTTGTTTCTCTCAAGATCGTTATATCTTCCAT 276
||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 126 CTTTCGCCGGAAATCGCCGATGAAAGACTTTGTTTCTCTCAAGACCGTTACATCTTCCAT 185
Query 277 ATTCTTAGATCTGATGGTCTTACCTTTCTCTGTATGGCCAATGATACCTTTGGAAGGAGG 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 ATTCTTAGATCTGATGGTCTTACCTTTCTCTGTATGGCCAATGATACCTTTGGAAGGAGG 245
Query 337 GTTCCATTTTCGTATTTGGAAGAGATTCATATGAGATTCATGAAAAACTATGGCAAAGTG 396
|||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 246 ATTCCATTTTCGTATTTGGAAGATATTCATATGAGGTTTATGAAAAACTATGGAAAAGTG 305
Query 397 GCTCATAATGCTCCAGCTTATGCAATGAATGATGAATTCTCAAGGGTTTTGCATCAGCAG 456
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GCGCATCATGCTCCAGCTTATGCAATGAATGATGAATTCTCAAGGGTTTTGCATCAGCAG 365
Query 457 ATGGAGTTCTTCTCTAGTAATCCTAGTGTTGATACTCTCAATCGTGTTAGAGGAGAAGTC 516
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 366 ATGGAGTTCTTCTCTAGTAATCCTAGTGTTGATACTCTTAATCGTGTTAGAGGAGAAGTC 425
Query 517 AGTGAGATTCGATCGGTCATGGTAGAGAACATTGAGAAGATAATGGAAAGAGGTGATAGG 576
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 426 AGTGAGATTCGATCGGTCATGGTAGAGAACATTGAGAAAATAATGGAGAGAGGTGATAGG 485
Query 577 ATTGAGCTTCTTGTTGATAAAACAGCAACAATGCAAGATAGCTCGTTTCACTTCAGGAAG 636
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 486 ATTGAGCTTCTTGTTGATAAAACAGCAACAATGCAAGATAGCGCGTTTCACTTCAGGAAG 545
Query 637 CAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTGGT-CTTGTT 695
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 546 CAATCTAAGCGTCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTGGTACT-GTT 604
Query 696 GACATGCTTGATAGTT-TTCTTGCTGTACATAATAATCGCATCTTTCTGCGGAGGAATCA 754
|||||||||||||||| || | ||| |||||||||||||||||||| |||||||||||||
Sbjct 605 GACATGCTTGATAGTTCTTGT-GCTCTACATAATAATCGCATCTTTTTGCGGAGGAATCA 663
Query 755 CTTTACCATCATGCAGATCTTAAAATCTGGCGGCCTTATCTAAGG 799
|| |||| |||||||||||||||| ||||||||||||||||||||
Sbjct 664 CTCTACCGTCATGCAGATCTTAAATTCTGGCGGCCTTATCTAAGG 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5