BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22370.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326545 jgi|Araly1|326545|fgenesh1_pm.C_scaffold_6001765 1402 0.0
> Ahg326545 jgi|Araly1|326545|fgenesh1_pm.C_scaffold_6001765
Length=876
Score = 1402 bits (759), Expect = 0.0
Identities = 817/846 (97%), Gaps = 0/846 (0%)
Strand=Plus/Plus
Query 106 ATGGTGTTTGGACAAGTAGTAATAGGTCCTCCAGGATCGGGAAAGACCACTTATTGCAAT 165
|||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||
Sbjct 1 ATGGTGTTTGGACAAGTAGTAATAGGTCCTCCTGGATCAGGCAAGACCACTTACTGCAAT 60
Query 166 GGAATGTCTCAGTTCCTCTCTCTAATGGGCAGGAAGGTTGCTATTGTTAATCTGGATCCT 225
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCATGTGTCAGTTCCTCTCTCTAATGGGCAGGAAGGTTGCTATTGTTAATCTGGATCCT 120
Query 226 GCAAATGATGCATTACCTTATGAGTGTGGTGTGAATATAGAAGAATTGATCAAGTTAGAA 285
||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||
Sbjct 121 GCAAATGATGCATTACCTTATGAATGTGCTGTGAATATAGAAGAATTGATTAAGTTAGAA 180
Query 286 GATGTTATGTCGGAACACTCGCTTGGTCCTAATGGAGGTCTTGTATATTGTATGGAGTAC 345
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATGTTATGCCGGAACACTCACTTGGTCCTAATGGAGGTCTTGTATATTGTATGGAGTAC 240
Query 346 TTGGAGAAAAACATTGACTGGCTGGAATCTAAACTAAAGCCTCTTCTGAAGGATCATTAC 405
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 241 TTGGAGAAAAACATTGACTGGCTGGAATCTAAACTAAAGCCTCTTTTGAAGGATCATTAC 300
Query 406 ATTCTCTTTGATTTTCCTGGCCAAGTGGAATTGTTCTTCATTCATGACAGTACCAAGAAT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCTCTTTGATTTTCCTGGCCAAGTGGAATTGTTCTTCATTCATGACAGTACCAAGAAT 360
Query 466 GTTCTCACGAAGCTGATTAAATCATTGAACCTTAGATTAACTGCTGTGCAACTAATTGAT 525
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTCTCACGAAGCTGATAAAATCATTGAACCTTAGATTAACTGCTGTGCAACTAATTGAT 420
Query 526 TCCCATCTATGTTGTGATCCCGGGAACTACGTAAGTTCGCTACTTCTCTCCTTATCCACA 585
||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||
Sbjct 421 TCCCATCTATGTTGTGATCCCGGGAACTATGTAAGCGCGTTGCTTCTCTCCTTATCCACA 480
Query 586 ATGCTTCACATGGAACTCCCACATGTCAATGTATTGTCTAAAATCGATCTGATTGGAAGC 645
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 ATGCTTCACATGGAACTCCCACATGTCAATGTCTTGTCTAAAATCGATCTGATTGGAAGC 540
Query 646 TACGGGAAGCTAGCTTTCAATTTAGATTTCTATACCGATGTTCAAGACTTGTCATACTTG 705
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 TACGGAAAGCTAGCTTTCAATTTAGATTTCTATACCGATGTTCAAGACTTATCATACTTG 600
Query 706 GAGCACCATCTTAGTCAAGATCCTCGCTCTGCTAAGTACAGAAAACTAACAAAAGAGCTA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGCACCATCTTAGTCAAGATCCTCGCTCTGCTAAGTACAGAAAACTAACAAAAGAGCTA 660
Query 766 TGTAGTGTCATTGAAGATTACAGTCTTGTTAATTTTACAACCTTGGATATTCAGGATAAA 825
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 661 TGTAGTGTTATTGAAGATTACAGTCTTGTTAATTTTACTACCTTGGATATTCAGGACAAA 720
Query 826 GAAAGTGTTGGGGATCTAGTAAAGCTCATCGACAAGAGCAATGGATACATATTTGCCGGC 885
|||||||||||| |||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 721 GAAAGTGTTGGGAATCTAGTAAAGCTCATTGACAAGAGCAATGGATACATATTTTCTGGC 780
Query 886 ATTGATGCAAGTGTGGTTGAATACAGCAAGATTGCAATTGGTCAAACTGATTGGGATTAT 945
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 ATTGATGCAAGTGTGGTTGAATACAGCAAGATTGCGATTGGTCAAACTGATTGGGATTAT 840
Query 946 AACAGA 951
||||||
Sbjct 841 AACAGA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5