BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22380.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489094 jgi|Araly1|489094|fgenesh2_kg.6__2228__AT5G22380.1 1153 0.0
Ahg897197 jgi|Araly1|897197|Al_scaffold_0005_1163 250 1e-65
> Ahg489094 jgi|Araly1|489094|fgenesh2_kg.6__2228__AT5G22380.1
Length=816
Score = 1153 bits (624), Expect = 0.0
Identities = 755/819 (92%), Gaps = 5/819 (1%)
Strand=Plus/Plus
Query 16 AGCTACAACTAATTAGAGTGTTTCTTGTTGTTAAAAATATCGTACAAAAATGGCCGATGA 75
|||||||| |||||||||| |||||| | ||| |||||||||||||||||| |||||
Sbjct 1 AGCTACAATTAATTAGAGTTTTTCTTAATATTACCTATATCGTACAAAAATGGCGGATGA 60
Query 76 GGTCACAATCGGGTTTCGCTTCTATCCCACGGAAGAAGAACTGGTTTCGTTCTACCTACG 135
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 61 GGTCACAATCGGGTTTCGCTTCTATCCCACGGAAGAGGAACTGGTTGCGTTCTACCTACG 120
Query 136 AAACCAGCTCGAAGGAAGGAGTGATGACTCAATGCATCGTGTCATTCCCGTACTTGACGT 195
||||||||| |||||||||||||| ||||||||||| ||||||||||| || ||||| ||
Sbjct 121 AAACCAGCTTGAAGGAAGGAGTGACGACTCAATGCACCGTGTCATTCCTGTTCTTGATGT 180
Query 196 CTTTGAGGTCGAGCCTAGTCATCTTCCAAATGTTGCTGGAGTGAGATGTCGAGGAGACGC 255
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CTTTGAGGTCGAGCCTAGTCATCTTCCAAATGTTGCGGGAGTGAGATGTCGAGGAGACGC 240
Query 256 TGAGCAATGGTTCTTCTTCGTGCCACGACAAGAACGCGAAGCAAGAGGAGGCAGACCGAG 315
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 241 TGAGCAATGGTTCTTCTTCGTGCCACGACAAGAACGCGAAGCTAGAGGAGGTAGACCGAG 300
Query 316 TAGAACTACTGGTTCAGGATACTGGAAAGCAACTGGATCACCTGGTCCAGTCTTTTCCAA 375
|||||| || || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 301 TAGAACCACGGGGTCAGGATACTGGAAAGCGACTGGATCACCTGGTCCTGTCTTTTCCAA 360
Query 376 AGACAACAAAATGATTGGAG-CAAAGAAAACTATGGTTTTCTACACTGGAAAAGCACCCA 434
|||||| ||||||||||| ||| |||||||||||||||||||||||| |||||||| |
Sbjct 361 CGACAACCGAATGATTGGAGTCAA-GAAAACTATGGTTTTCTACACTGGGAAAGCACCAA 419
Query 435 CAGGAAGAAAAACTAAATGGAAAATGAATGAGTACCACGCCGTTGACGAAACAGTCAACG 494
| ||||||||||| |||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 420 CCGGAAGAAAAACAAAATGGAAGATGAATGAGTACAAAGCCGTTGACGAAACAGTCAACG 479
Query 495 CTTCCACAATCCCTAAGCTGAGACGTGAGTTCAGTTTATGTCGAGTCTACATAACAACAG 554
||||||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 480 CTTCCACAATCCCTAAGTTGAGACATGAATTCAGTTTATGTCGTGTCTACATAACAACAG 539
Query 555 GAAGCTCCAGAGCTTTTGATAGACGTCCTGAGGGAGTTTTGCAGACAGAGAGAATGCTAA 614
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 540 GAAGCTCCAGAGCTTTTGATAGACGTCCTGTGGAAGTTTTGCAGACAGAGAGAATGCTTA 599
Query 615 CAAGTGATGTTGCAGTAGCTGAGACATCGTTCCGTGTGGAAAGCTCA-CTGGAAACTTCG 673
||||||||||||| || |||||||||||||| ||||| ||||||||| | ||||||||||
Sbjct 600 CAAGTGATGTTGCGGTGGCTGAGACATCGTTTCGTGTCGAAAGCTCATC-GGAAACTTCG 658
Query 674 ATTTCAGGAGGAGAACATATTGATGTCTCTATGAACACAGAGTTTGTTGATGGACTATCA 733
||||||||||||||| |||||||| ||||||||| |||||||| ||||||||| || ||
Sbjct 659 ATTTCAGGAGGAGAAAATATTGATCTCTCTATGAGTACAGAGTTGGTTGATGGATTAACA 718
Query 734 GAACCGATGTGGGACTGGGAACAGCTGACTTGGCCTTGAAGCTATATAGATTTTATAATC 793
||||| || ||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 719 GAACCAATCTGGGAATGGGAACAGCTGAGTTGGCCTTGAAGCTATATAGATTTTATAATG 778
Query 794 AAGCAAATTTAAACTTGTTTCAATTGCTTATTGTTAGTT 832
|||||||||||| |||||||||||||||||||||||||
Sbjct 779 AAGCAAATTTAAG-TTGTTTCAATTGCTTATTGTTAGTT 816
> Ahg897197 jgi|Araly1|897197|Al_scaffold_0005_1163
Length=699
Score = 250 bits (135), Expect = 1e-65
Identities = 317/403 (79%), Gaps = 19/403 (5%)
Strand=Plus/Plus
Query 86 GGGTTTCGCTTCTATCCCACGGAAGAAGAACTGGTTTCGT-TCTACCTACGAAACCAGCT 144
|||||||| |||||||| || |||| ||| || || ||| | |||||| ||| ||||||
Sbjct 22 GGGTTTCGGTTCTATCCGACAGAAGTAGAGCTTCTTACGTAT-TACCTAAGAATCCAGCT 80
Query 145 CGAAGGAAGGAGTGATGACTCAATGCATC-GTGTCATTCCCG-TACTTGACGTCTTTGAG 202
| || |||| ||| | | || || | || ||| | ||| | || || || ||| ||
Sbjct 81 TGGTGG-AGGA--AATGCCACCATTCA-CAGTCTCA-TACCGATCCTCGATGTGTTT-AG 134
Query 203 -GTCGAGCCTA-GTCATCTTCCAAATGTTGCTGGAGTGAGATGTCGAGGAGACGCTGAGC 260
|| ||||||| | || ||||||||| |||| |||| ||| |||||||||||||| || |
Sbjct 135 CGTTGAGCCTACG-CAGCTTCCAAATCTTGCGGGAGAGAGGTGTCGAGGAGACGCAGAAC 193
Query 261 AATGG-TTCTTCTTCGTGCCACGACAAGAACGCGAAGCAAGAGGAGGCAGACCGAGTAGA 319
||||| || |||||||||||| ||||||| || ||||| |||||||| |||||||||||
Sbjct 194 AATGGCTT-TTCTTCGTGCCAAGACAAGAGCGGGAAGCTAGAGGAGGAAGACCGAGTAGG 252
Query 320 ACTACTGGTTCAGGATACTGGAAAGCAACTGGATCACCTGGTCCAGTCTTTTC-CAAAGA 378
|| ||||||||||||||||||||||||||||| ||||| || || || || || | ||
Sbjct 253 ACCACTGGTTCAGGATACTGGAAAGCAACTGGTTCACCAGGCCCCGTGTTCTCGCCG-GA 311
Query 379 CAACAAAATGATTGGAGCAAAGAAAACTATGGTTTTCTACACTGGAAAAGCACCCACAGG 438
||| | |||| |||| ||||| || ||||||||||| || ||||||||||| || ||
Sbjct 312 TAACCGAGTGATCGGAGTTAAGAAGACGATGGTTTTCTATACCGGAAAAGCACCTACTGG 371
Query 439 AAGAAAAACTAAA-TGGAAAATGAATGAGTACCACGCCGTTGA 480
||||| || ||| ||||| |||||||| ||| | || |||||
Sbjct 372 GAGAAAGAC-AAAGTGGAAGATGAATGAATACAAAGCAGTTGA 413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5