BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22400.1
Length=1867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941744 jgi|Araly1|941744|scaffold_602288.1 2145 0.0
> Ahg941744 jgi|Araly1|941744|scaffold_602288.1
Length=1432
Score = 2145 bits (1161), Expect = 0.0
Identities = 1348/1436 (94%), Gaps = 21/1436 (1%)
Strand=Plus/Plus
Query 119 AAATCTGAA--GCGCCATGACTGAAGttcttcactttccttcatctccaagcgcttctca 176
||||||||| |||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 5 AAATCTGAAGTGCGCCATGACTGAAGTCCTTCACTTTCCTTCATCTCCAAGCGC-T-TC- 61
Query 177 ttcatcttcttcttcttcttcttctccttcaccttcttctttatcttacgcctctcgctc 236
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 -TC--CTTCATCTTCTTCTTCTTCTCCTTCACCTTCTTCTTTATCTTACGCCTCTCGCTC 118
Query 237 taatgcgactctcttGATTAGCTCTGACCACAACCGGAGAAACCCAGTTGCTAGATTCGA 296
|||||| |||||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 119 CAATGCGTCTCTCTTGATTAGCTCTGACCATAACCGGAGAAACCCAGTTCCTGGATTCGA 178
Query 297 TCAAGATGTTGACTTTCATGCCTCAATCGAAGAACAAGATTT--G-AGAAGACGGAGCAG 353
|||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| |
Sbjct 179 TCAAGATGTTGACTTTCATGGCTCAATCGAAGAACAAGATTTGAGAAGAAGACGGAGCGG 238
Query 354 TACCGATGGAGGAGAAGAAGACGATGGTGGGGAAGATCAGATTTCGTTGTTGGCTCTTCT 413
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TA---ATGTCGGAGAAGAAGACGATGGTGGGGAAGATCAGATTTCGTTGTTGGCTCTTCT 295
Query 414 TGTTGCCATTTTCAGGAGATCTTTGATTTCTTGCAAGAGTAACCGGAGGGAGCTTTGTAG 473
||| || ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 296 TGTCGCTATTTTCAGGAGATCTTTGATTTCTTGCAAGAGTAATCGGAGAGAGCTCTGTAG 355
Query 474 CATGGAGATTGGATGGCCTACCAATGTCAGACACGTGGCGCACGTTACCTTTGATCGTTT 533
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 356 CATGGAGATTGGATGGCCTACCAATGTCCGACACGTGGCGCACGTTACCTTCGATCGTTT 415
Query 534 CAATGGCTTCTTGGGTTTGCCTGTTGAATTCGAGCCTGAAGTTCCTAGAAGAGCTCCAAG 593
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 416 CAATGGCTTCTTGGGTTTGCCTGTTGAATTCGAGCCTGAAGTTCCAAGAAGAGCTCCAAG 475
Query 594 CGCCAGTGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCGTATGATTCAAG 653
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 476 CGCCAGTGCAACAGTCTTTGGGGTATCAACCGAATCAATGCAATTATCATATGATTCAAG 535
Query 654 AGGCAATTGTGTACCAACCATACTATTGCTGATGCAAAACTGTTTATATAGTCAAGGAGG 713
|||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 536 AGGCAATTGTGTACCAACCATACTCTTGTTGATGCAAAACTGTTTATACAGTCAAGGAGG 595
Query 714 CTTGCAGGCAGAGGGCATTTTTAGACTCACTGCTGAGAATAGTGAGGAAGAGGCGGTTAG 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CTTGCAGGCAGAGGGCATTTTTAGACTCACTGCTGAGAATAGTGAGGAAGAGGCGGTTAG 655
Query 774 GGAACAATTAAACCGAGGATTTATACCTGAGCGAATCGATGTTCACTGTTTGGCAGGGCT 833
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 656 GGAACAACTAAACCGCGGATTTATACCTGAGAGAATCGATGTTCACTGTTTGGCAGGGCT 715
Query 834 TATCAAGGCATGGTTTAGAGAACTGCCGACAAGCGTTCTTGATTCGTTGTCGCCTGAACA 893
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 TATCAAGGCATGGTTTAGAGAACTGCCTACAAGCGTTCTTGATTCGTTGTCGCCTGAACA 775
Query 894 GGTGATGCAGTGCCAAACAGAAGAGGAAAATGTTGAGCTCGTTAGGCTTCTTCCACCTAC 953
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 776 GGTGATGCAGTGCCAAACAGAAGAGGAAAATGTAGAGCTCGTTAGGCTTCTTCCACCTAC 835
Query 954 AGAAGCTGCTCTACTTGATTGGGCCATCAATCTAATGGCAGATGTTGTTCAGTATGAACA 1013
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGAAGCTGCTCTGCTTGATTGGGCCATCAATCTAATGGCAGATGTTGTTCAGTATGAACA 895
Query 1014 TCTAAACAAGATGAATTCACGCAACATCGCTATGGTTTTCGCACCAAATATGACACAGAT 1073
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 896 TCTTAACAAGATGAATTCACGCAACATCGCTATGGTTTTCGCACCGAATATGACACAGAT 955
Query 1074 GGATGATCCACTGACAGCACTGATGTATGCGGTTCAAGTGATGAACTTTCTCAAGACACT 1133
|||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 956 GGATGATCCATTGACAGCACTGATGTATGCGGTTCAAGTCATGAATTTTCTCAAGACACT 1015
Query 1134 AATCGAAAAAACTTTAAGAGAAAGGCAAGACTCAGTGGTCGAGCAAGCTCATGCATTCCC 1193
||||| ||||| || | || ||||||||||| ||||| ||||||||||||| || |||
Sbjct 1016 GATCGATAAAACACTACGGGAGAGGCAAGACTCGGTGGTTGAGCAAGCTCATGTATGCCC 1075
Query 1194 TTTAGAACCGTCTGATGAGAGTGGTCACCAAAGCCCTTCACAATCTTTGGCTTTTAACAC 1253
|||| |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1076 TTTACAACCTTCTGATGAGAGCGGTCACCAAAGCCCTTCACAGTCTTTGGCTTTTAACAC 1135
Query 1254 CAGTGAGCAGAGTGAAGAGACGCAATCAGACAACATCGAAAATGCTGAAAATCAGAGTTC 1313
|| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CATTGAACAGAGTGAAGAAACGCAATCAGACAACATCGAAAATGCTGAAAATCAGAGTTC 1195
Query 1314 AAGCAGTGAGATATCAGACGAATTAACCCTAGAGAACAATGCATGTGAACAGAGAGAAAC 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1196 AAGCAGTGAGATATCAGACGAATTAACCCTAGAGAACAATGCATGTGAACAGAGAGAATC 1255
Query 1374 AGACTTTGGAAAATACAGAAC-AGGAAGATTGAGCGACTCGAG-TCAACAGGTGGTGCTG 1431
||||| |||||||| ||| || ||| ||||||||||||| || | |||| | |||||
Sbjct 1256 AGACTCTGGAAAATGCAGGACCAGGG-GATTGAGCGACTC-AGGTGTACAG-T--TGCTG 1310
Query 1432 AATCTAGATCCTCCAGCTCAGTGGCCAGTGGGCAGAACAAAGGGGTTGACCAACTTGAGC 1491
| ||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1311 ACTCTGGCTCCTCCAGCTCAGTGGCCTGTGGGCAGAACAAAGGGATTGACCAACTTGAGC 1370
Query 1492 CGTGTAGGATCGAGGGTAGAGCGTACTGAAGCTTGGCGGTGAAGAAAAAGGAGCAG 1547
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1371 CGTGTAGGATCTAGGGTAGAGCGTACTGAAGCTTGGCGGTGAAGATAATGGAGCAG 1426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70124141045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5