BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22410.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489097 jgi|Araly1|489097|fgenesh2_kg.6__2231__AT5G22410.1 1376 0.0
> Ahg489097 jgi|Araly1|489097|fgenesh2_kg.6__2231__AT5G22410.1
Length=1056
Score = 1376 bits (745), Expect = 0.0
Identities = 963/1067 (90%), Gaps = 19/1067 (2%)
Strand=Plus/Plus
Query 7 GAATTCATATAGAAATTTCAACTAAAAATGGCCGTGAAGATCTCGACCAT-TGAAGTATT 65
||||||||||||| |||||||| ||||||||||||||||||||| ||||| | ||||||
Sbjct 1 GAATTCATATAGATATTTCAACCAAAAATGGCCGTGAAGATCTCAACCATAT-CAGTATT 59
Query 66 GATCCTCTCCCTTGCTCTACTTAGCTTCGGCCATGGTTGTTATGGCCAGCTTCGACTCGG 125
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 60 GATCCTTTCCCTTGCTCTACTTAGCTTCGGCCATTGTTGTTATGGCCAGCTTCGAATCGG 119
Query 126 ATTCTACAGTCA-AAATTGCCAAAACGTCGAAAACATCGTATCTAAAGTTGTTGGAGAGG 184
|||||||||| | ||| |||| ||| ||||||||||| ||||||||||||||||||||||
Sbjct 120 ATTCTACAGT-ACAAAGTGCCCAAATGTCGAAAACATTGTATCTAAAGTTGTTGGAGAGG 178
Query 185 CATTCATCAAGGATTCATCGATTGCACCCGCAATGATCCGCCTTTATTTTCACGATTGTT 244
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CATTCATCAAGGGTTCGTCCATTGCACCCGCAATGATCCGCCTTTATTTTCACGATTGTT 238
Query 245 TTAGCAACGGGTGTGATGCATCGCTTCTTCTAGATGGTTCGAACAGTGAGAAAAAGGCGT 304
|||||||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct 239 TTAGCAACGGATGTGATGCATCGCTTCTTCTAGACGGTGCGAGCAGTGAGAAAAAGGCGT 298
Query 305 CACCAAATCTAAGTGTACGCGGATACGAAGTGATAGATGACATTAAGTCTGCGGTCGAAA 364
| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||
Sbjct 299 CGCCAAATCTAAGTGTACGAGGATACGAATTGATAGATGACATTAAATCTGCGGTCGAGC 358
Query 365 AAGAATGTGACAGGGTCGTTTCTTGTGCTGATATCATAGCTCTCGCGACTAGAGATCTTG 424
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 AAGAATGCGATAGGGTCGTTTCTTGTGCTGATATCATAGCTCTTGCGACTAGAGATCTTG 418
Query 425 TTACTCTTGCAAGCGGAGGGAAAACACGATATGAGATACCAACAGGACGATTGGACGGTA 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 419 TTACTCTTGCAAGCGGAGGGAAAACACGATATGAGATACCAACAGGACGATTAGACGGCA 478
Query 485 AAATCTCTTCGGCTTTGCTTGTCGATTTGCCGTCTCCAAAGATGACCGTCGCGGAAACTG 544
|| |||||| ||||||||| || ||||| |||||||| |||||||||| || ||||||
Sbjct 479 AAGTCTCTTTGGCTTTGCTCGTGGATTTACCGTCTCCTCGGATGACCGTCTCGCAAACTG 538
Query 545 CTGCTAAATTTGATCAGAGGAAACTTAGCCTTAACGATATGGTTCTACTTCTTGGTGGAC 604
|||| ||||||| | | |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 539 CTGCGAAATTTGCTGACAGGAAACTAAGCCTTACCGATATGGTTCTACTTCTTGGTGGAC 598
Query 605 ATACGATTGGAGT-GACACATTGTTCCTTCATTATGGACAGATTATATAACTTTC-AAAA 662
||||||| ||||| | |||||||||| ||| |||||||| | ||||||| |||| ||||
Sbjct 599 ATACGATCGGAGTTG-CACATTGTTCGTTCGTTATGGACCGGCTATATAA-TTTCCAAAA 656
Query 663 CACGCAA-AAGCCTGATCCATCTATGGATCCTAAATTGGTCGAAGAACTAAG-CGCCAAA 720
|||||| || ||||||||||| |||||||||||||||||| |||||||||| | | |||
Sbjct 657 TACGCAACAA-CCTGATCCATCCATGGATCCTAAATTGGTCCAAGAACTAAGACTC-AAA 714
Query 721 TGCCCTAAG-AGTTCATCAACCGATGGCATCATTAGTCTGGATCAAAATGCTACTAGCTC 779
||||||||| | ||| |||| ||||||||||||| ||||||||||||| ||| || ||
Sbjct 715 TGCCCTAAGGA-TTCGTCAATTGATGGCATCATTAATCTGGATCAAAATTTTACGAGTTC 773
Query 780 GAATACTATGGATGTATCTTTCTACAAAGAGATAAAAGTT-AGCCGTGGAGTCCTTCATA 838
|||||||||||||||||||||||| ||| ||||||| || | ||| ||| |||||||||
Sbjct 774 GAATACTATGGATGTATCTTTCTATAAACAGATAAATTTTCA-CCGCGGAATCCTTCATA 832
Query 839 TCGATCAAAAACTTGCCATCGACGATTTGACAAGTAAGATGGTGACGGATATAGCCAACG 898
|||||||| ||||||||||||| | |||| |||||||||||||||||||||||||| |
Sbjct 833 TCGATCAACAACTTGCCATCGATGGGATGACGAGTAAGATGGTGACGGATATAGCCAATG 892
Query 899 GTAACGATTTCTTGGTTAGGTTTGGTCAGGCAATGGTGAATTTGGGATCGGTGAGAGTTA 958
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 893 GTAACGACTTCTTGGCTAGGTTTGGTCAGGCAATGGTGAATTTGGGATCGGTGAGACTTA 952
Query 959 TTAGTAAGCCCAAAGACGGGGAGATAAGAAGATCATGTCGTTCTACTTGCAACAATCCAT 1018
|||||||| ||||||||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct 953 TTAGTAAGGCCAAAGACGGGGAGATAAGAAAATCATGTCGTTCT--T-GCAACAATCCAT 1009
Query 1019 TATGCGTATAAACAGTTGAATAAAGTTACGCGCTAtattttttgttt 1065
||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 1010 CATGCGTATAAACAGTTGAATAAAATTACGCGCTGTTTTTTTTGTTT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5