BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22430.1

Length=931
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg351266 jgi|Araly1|351266|fgenesh1_pg.C_scaffold_6001859           859    0.0  


> Ahg351266 jgi|Araly1|351266|fgenesh1_pg.C_scaffold_6001859
Length=519

 Score =  859 bits (465),  Expect = 0.0
 Identities = 502/520 (97%), Gaps = 2/520 (0%)
 Strand=Plus/Plus

Query  124  ATGGCGAATCAAGCAGCTGCTGCAGCATTCTTCCTTTTCGCTTTAGCCGTCTTCTCCAAC  183
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGAATCAAGCAGCTGTTGCAGCATTCTTCCTTTTCGCTTTAGCCGTCTTCTCCAAC  60

Query  184  TTGGAGCTCTCAGCTTCTTCACTTGTCAGTGGCAAGATCTCTTGCCTTGACTGCCACCGC  243
            || |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  61   TTCGAGCTCTCGGCTTCTTCACTTGTCAGCGGCAAGATATCTTGCCTTGACTGCCACCGC  120

Query  244  GATTTCGACTTCTCAGGCATTAAGGTCCTCCTTAAATGCGACGGAGAGAAGAAACAAATA  303
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  GATTTCGACTTCTCAGGCATTAAGGTCCTCCTTAAATGCGACGGAGAGAAGAAACAGATA  180

Query  304  ACCGCGGTGGCAGCTGCAGACGGATCTTTCCGGTCAGTGCTTCCAACGGCTGACAAAAAA  363
            |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  181  ACCGCGATGGCAGCTTCAGACGGATCTTTCCGCTCAGTGCTTCCAACGGCTGACAAAAAA  240

Query  364  GGCTCC-ATAAATTGTCTTGCAAAGCTCTTGGGAGGCCCTGAGCAACTCTATGCTCACAA  422
            |||||| | ||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  241  GGCTCCGA-AAATTGTCTTGCAAAGCTCTTGGGAGGTCCTGAGCAACTTTATGCTCACAA  299

Query  423  ACACAACTTGGTCTCTGAATTGGTCAAATCTAAACACGATTCCAAAGTTTTAACTACCTC  482
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  300  ACACAACTTGGTCTCTGAATTGGTCAAGTCTAAACACGATTCCAAAGTTTTAACTACCTC  359

Query  483  AAACCCACTTGCCTTCTCTCTCTCCTGCCCCAAACCATCCCGAGATGATATCGGAAGTAT  542
            ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||
Sbjct  360  AAACCCACTTGCCTTCTCTCTCTCCTGCCCCAAACCAACCCAAGATGATGTCGGAAGTAT  419

Query  543  GATCGGAGATTCCAAGACTATTAATTTTCCGGGGGCAGGAGGTTTTGGATTCCCACCTGC  602
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  420  GATCGGAGATTCCAAGACTATTAATTTTCCGGGGACAGGAGGTTTTGGATTCCCACCTGC  479

Query  603  CAGCTTCTTTCCCTTCTTACCAATCATTGGTATCCCATGA  642
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  480  CAGCTTCTTTCCCTTCTTACCAATCATTGGTATCCCATGA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34539362802


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5