BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22440.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894117 jgi|Araly1|894117|Al_scaffold_0006_2113 1081 0.0
Ahg919580 jgi|Araly1|919580|scaffold_100861.1 603 1e-171
Ahg481757 jgi|Araly1|481757|fgenesh2_kg.4__817__AT2G27530.1 564 5e-160
> Ahg894117 jgi|Araly1|894117|Al_scaffold_0006_2113
Length=654
Score = 1081 bits (585), Expect = 0.0
Identities = 632/655 (96%), Gaps = 2/655 (0%)
Strand=Plus/Plus
Query 91 ATGAGTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCACTGT 150
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1 ATGAGTAAGCTTCAGAGTGAAGCCGTAAGAGAGGCAATATCCTCCATTATCACTCACTGC 60
Query 151 AAGGAGACAAAGCCACGCAACTTCACTGAGACTATTGAACTCCAGATTGGTCTCAAGAAC 210
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AAGGAGACTAAGCCACGCAACTTCACTGAGACTATTGAACTCCAGATTGGTCTTAAGAAC 120
Query 211 TATGACCCTCAAAAGGACAAGAGATTTAGCGGTTCTGTGAAATTGCCTCACGTTCCTAGG 270
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TATGACCCTCAAAAGGACAAGAGATTTAGCGGTTCGGTGAAATTGCCTCACGTTCCTAGG 180
Query 271 CCAAAGATGAAGATTTGCATGCTTGGTGATGCCCAGCACGTCGAAGAGGCTGAGAAGATT 330
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 181 CCAAAGATGAAGATTTGCATGCTTGGAGACGCCCAGCACGTCGAAGAGGCTGAGAAGATT 240
Query 331 GGATTGGAATCTATGGATGTTGAAGCTCTTAAGAAGTTGAACAAGAACAAGAAACTTGTT 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATTGGAATCTATGGATGTTGAAGCTCTTAAGAAGTTGAACAAGAACAAGAAACTTGTT 300
Query 391 AAGAAGCTTGCTAAGAAATTCCATGCTTTCCTTGCTTCTGAATCTGTCATTAAGCAGATT 450
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 AAGAAGCTTGCTAAGAAATTCCATGCTTTCCTTGCTTCGGAATCTGTCATTAAGCAGATT 360
Query 451 CCTCGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAATTCCCAACTCTTGTTAGCCAC 510
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 CCTCGTCTTCTTGGTCCCGGTCTCAACAAGGCAGGAAAGTTCCCAACTCTTGTTAGCCAC 420
Query 511 CAAGAGTCTTTGGAATCCAAAGTGAATGAGACAAAGGCAACAGTGAAGTTCCAGCTCAAG 570
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAAGAGTCTTTGGAATCGAAAGTGAATGAGACAAAGGCAACAGTGAAGTTCCAGCTCAAG 480
Query 571 AAGGTTCTATGTATGGGAGTTGCTGTCGGTAATCTTTCCATGGAGGAGAAGCAGATCTTT 630
|||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 481 AAGGTTCTCTGTATGGGAGTCGCTGTCGGGAATCTTTCCATGGAAGAGAAGCAGATCTTT 540
Query 631 CAAAATGTTCAGATGAGTGTTAACTTCCTCGTTTCTCT-CTTGAAGAAAAACTGGCAAAA 689
|| |||||||||||||||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 541 CAGAATGTTCAGATGAGTGTTAACTTCCTCGTTTCACTTCT-GAAGAAAAACTGGCAGAA 599
Query 690 TGTGAGGTGCTTGTACTTGAAGAGCACAATGGGTCCACCAAACCGAGTTTTCTAA 744
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 TGTGAGGTGCTTGTACTTGAAGAGCACAATGGGTCCACCGAACCGAGTTTTCTAA 654
> Ahg919580 jgi|Araly1|919580|scaffold_100861.1
Length=694
Score = 603 bits (326), Expect = 1e-171
Identities = 549/654 (84%), Gaps = 25/654 (4%)
Strand=Plus/Plus
Query 87 CAAAATGAGTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCA 146
|||||||||||||||||||||||| ||||||||||| || || | || ||||||| ||
Sbjct 19 CAAAATGAGTAAGCTTCAGAGTGAGGCCGTGAGAGAAGCCATCA-CT--ATTATCA--CA 73
Query 147 CTGT-AA--GGA-GACAAAGCCACGCAACTTCACT-GAGACTATTGAACTCCAGATTGGT 201
|| || || | ||||| ||| ||||| | |||||| |||| |||||||| |||
Sbjct 74 -GGTAAATCCGATG-CAAAGAAACGTAACTT-TGTGGAGACTGTTGAGCTCCAGATCGGT 130
Query 202 CTCAAGAACTATGACCCTCAAAAGGACAAGAGATTT-AGCGGTTCTGTGAAATTGCCTCA 260
|| ||||||||||| ||||| ||||||||| | ||| || || ||||| || || || ||
Sbjct 131 CTGAAGAACTATGATCCTCAGAAGGACAAGCG-TTTCAGTGGATCTGTCAAGTTACCACA 189
Query 261 CGTTCCTAGGCC-AAAGATGAAGATTTGCATGCTTGGTGATGCCCAGCACGTCGAAGAGG 319
| || | || ||| |||||||| |||||||| || |||||||| || || |||||||
Sbjct 190 TATCCCCCGTCCTAAA-ATGAAGATCTGCATGCTCGGAGATGCCCAACATGTTGAAGAGG 248
Query 320 CTGAGAAGATTGGATTGGAATCTATGGATGTTGAAG-CTCTTAAGAAG-TTGAACAAGAA 377
||||||| || ||| ||||| ||||||||||| || |||| || ||| || ||||| ||
Sbjct 249 CTGAGAAAATGGGACTGGAAAATATGGATGTTG-AGTCTCTAAAAAAGCTT-AACAAAAA 306
Query 378 CAAGAAACTTGTTAAGAAGCTTGCTAAGAAATTCCATGCTTTCCTT-GCTTCTGAATCTG 436
||||||||| || ||||||||||| ||||||| ||||||||| ||| || ||||| ||||
Sbjct 307 CAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACCATGCTTT-CTTGGCCTCTGAGTCTG 365
Query 437 TCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAATTCCCAA 496
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 366 TCATTAAGCAGATTCCACGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAGTTCCCAA 425
Query 497 CTCTTGTTAGCCACCAAGAGTCTTTGGAATCCAAAG-TGAATGAGACAAAGGCAACAGTG 555
||||||| |||||||| || || || || || |||| ||||||| |||||||||||||||
Sbjct 426 CTCTTGTGAGCCACCAGGAATCCTTAGAGTC-AAAGGTGAATGAAACAAAGGCAACAGTG 484
Query 556 AAGTTCCAGCTCAAGAAGGTTCTATGTATGGGAGTTGCTGTCGGTAATCTTTCCATGGAG 615
|| |||||||| ||||||||||| || ||||||||||| || ||||| ||||| |||||
Sbjct 485 AAATTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCAGTTGGTAACCTTTCAATGGAA 544
Query 616 GAGAAGCAGATCTTTCAAAATGTTCAGATGAGTGTTAACTTCCTCGTTTCTCTCTTGAAG 675
||||||||||| ||||| ||||||||||||||||| ||||||||||| || || ||||||
Sbjct 545 GAGAAGCAGATTTTTCAGAATGTTCAGATGAGTGTCAACTTCCTCGTCTCGCTATTGAAG 604
Query 676 AAAAACTGGCAAAATGTGAGGTGCTTGTACTTGAAGAGCACAATGGGTCCACCA 729
|| |||||||||||||| ||||| |||||| | |||||||||||||| ||||||
Sbjct 605 AAGAACTGGCAAAATGTCAGGTGTTTGTACCTCAAGAGCACAATGGGACCACCA 658
> Ahg481757 jgi|Araly1|481757|fgenesh2_kg.4__817__AT2G27530.1
Length=895
Score = 564 bits (305), Expect = 5e-160
Identities = 545/657 (83%), Gaps = 31/657 (5%)
Strand=Plus/Plus
Query 87 CAAAATGAGTAAGCTTCAGAGTGAAGC-CGTGAGAGAGGC-AATAAGCTCCATTATCACT 144
||| |||||||||||||||||||| || | | ||||| || | || | |||| |
Sbjct 109 CAATATGAGTAAGCTTCAGAGTGAGGCTC-TTAGAGAAGCTATTACG-ACCATCAAGGGA 166
Query 145 CACTGTAAGGAGACAAAGCCACGCAACTTCACTGAGACTA-TTGAACTCCAGATTGGTCT 203
| | | |||||| ||| ||| ||||| |||||| | | ||||| |||||||||||
Sbjct 167 AAATCTGAGGAGA-AAA--AACGTAACTTTGTTGAGAC-AGTGGAACTTCAGATTGGTCT 222
Query 204 CAAGAACTATGACCCTCAAAAGGACAAGAGATTT-AGCGGTTCTGTGAAATTGCCTCACG 262
|||||||||||||| |||||||| ||| | ||| || || |||||||| | || ||
Sbjct 223 GAAGAACTATGACCCACAAAAGGATAAGCG-TTTCAGTGGATCTGTGAAGCTACCGCATA 281
Query 263 TTCCTAGGCC-AAAGATGAAGATTTGCATGCTTGGTGATGCCCAGCACGTCGAAGAGGCT 321
||||| | || ||| |||||||| || |||||||| ||||| || || || || |||||
Sbjct 282 TTCCTCGCCCGAAA-ATGAAGATCTGTATGCTTGGAGATGCTCAACATGTTGAGGAGGCG 340
Query 322 GAGAAGATTGGA-TT-GGAATCTATGGATGTTGAAGCTCTT-AAGAAG-TTGAACAAGAA 377
||||| || ||| || | || | ||||||||||| ||| || |||||| || ||||||||
Sbjct 341 GAGAAAATGGGACTTAGCAA-C-ATGGATGTTGAGGCT-TTGAAGAAGCTT-AACAAGAA 396
Query 378 CAAGAAACTTGTTAAGAAGCTTGCTAAGAAATT-CCATGCTTTCCTT-GCTTCTGAATCT 435
|||||| ||||||||||||||||||||| || ||||||||| ||| ||||||||||||
Sbjct 397 CAAGAAGCTTGTTAAGAAGCTTGCTAAG-TCTTACCATGCTTT-CTTGGCTTCTGAATCT 454
Query 436 GTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAATTCCCA 495
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 455 GTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGTCTTAACAAGGCAGGAAAGTTCCCA 514
Query 496 ACTCTTGTTAGCCACCAAGAGTCTTTGGAATCCAAAG-TGAATGAGAC-AAAGGCAACAG 553
|||||||| || ||||||||||| |||||| | |||| |||||||||| |||| ||||||
Sbjct 515 ACTCTTGTGAGTCACCAAGAGTCATTGGAAGC-AAAGGTGAATGAGACCAAAG-CAACAG 572
Query 554 TGAAGTTCCAGCTCAAGAAGGTTCTATGTATGGGAGTTGCTGTCGGTAATCTTTCCATGG 613
||||||||||| | ||||| ||||| |||||||| |||||||| ||||| ||||| ||||
Sbjct 573 TGAAGTTCCAGTTGAAGAAAGTTCTGTGTATGGGTGTTGCTGTTGGTAACCTTTCAATGG 632
Query 614 AGGAGAAGCAGATCTTTCAA-AATGTTCAGATGAGTGTTAACTTCCTCGTTTCTCTCTTG 672
| ||||||||| | |||| | ||||| |||||||| |||||||||||||| |||||||||
Sbjct 633 AAGAGAAGCAGCT-TTTCCAGAATGTGCAGATGAGCGTTAACTTCCTCGTCTCTCTCTTG 691
Query 673 AAGAAAAACTGGCAAAATGTGAGGTGCTTGTACTTGAAGAGCACAATGGGTCCACCA 729
||||| || |||||||| || ||||| ||||||||||||||||| ||||| ||||||
Sbjct 692 AAGAAGAATTGGCAAAACGTAAGGTGTTTGTACTTGAAGAGCACCATGGGACCACCA 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5