BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22460.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351269 jgi|Araly1|351269|fgenesh1_pg.C_scaffold_6001862 1602 0.0
> Ahg351269 jgi|Araly1|351269|fgenesh1_pg.C_scaffold_6001862
Length=1023
Score = 1602 bits (867), Expect = 0.0
Identities = 973/1025 (95%), Gaps = 4/1025 (0%)
Strand=Plus/Plus
Query 185 ATGATGTTTTCGGTGACGGTTGCGATCCTTGTTTGTCTTATTGGCTACATTTACCGATCA 244
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGATGTTTTCGGTGATGGTTGCGATCCTTGTTTGCCTTATTGGCTACATTTACCGATCA 60
Query 245 TTTAAGCCTCCACCACCGCGAATCTGCGGCCATCCTAACGGTCCTCCGGTTACTTCTCCG 304
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTTAGGCCTCCACCACCGCGAATCTGCGGCGTTCCTAACGGTCCTCCGGTTACTTCTCCA 120
Query 305 AGAATCAAGCTCAG-TGATGGAAGATATCTTGCTTATAGAGAATCTGGGGTTGAT-AGAG 362
||||| |||||| | |||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 121 AGAATTAAGCTC-GATGATGGAAGATATCTTGCCTATAGAGAATCTGGGGTTGATCA-AG 178
Query 363 ACAATGCTAACTACAAGATCATTGTCGTTCATGGCTTCAACAGCTCCAAAGACACTGAAT 422
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 179 CCAATGCTAACTACAAGATCATTGTCGTTCATGGCTTCAACAGTTCCAAAGACATTGAAT 238
Query 423 TTCCCATCCCTAAGGATGTAATTGAGGAGCTTGGGATATACTTTGTGTTCTACGATAGAG 482
||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 239 TTCCCATCCCTAAGGATCTAATTGAGGAACTTGGGATATACTTTTTGTTCTACGATAGGG 298
Query 483 CAGGATATGGAGAAAGTGATCCACACCCATCACGCACTGTTAAGAGTGAAGCATACGACA 542
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 299 CAGGATATGGAGAAAGTGATCCACACCCATCACGCACAGTTAAAAGTGAAGCATACGACA 358
Query 543 TTCAAGAACTCGCCGATAAACTCAAGATCGGACCAAAGTTCTATGTTCTTGGTATATCAC 602
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 TTCAAGAACTTGCCGATAAACTCAAGATCGGACCAAAGTTCTACGTTCTTGGTATATCAC 418
Query 603 TAGGTGCTTACTCGGTTTATAGTTGCCTCAAATACATTCCCCACAGACTAGCTGGAGCAG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TAGGTGCTTACTCGGTTTATAGTTGCCTCAAATACATTCCCCACAGACTAGCTGGAGCAG 478
Query 663 TCTTAATGGTTCCATTTGTGAACTATTGGTGGACTAAAGTGCCTCAAGAAAAATTGAGTA 722
||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 479 TCTTAGTGGTTCCATTTGTGAACTACTGGTGGACTAAAGTGCCTCAAGACAAATTGAGTA 538
Query 723 AAGCGTTGGAGCTAATGCCAAAGAAAGACCAATGGACGTTTAAAGTGGCTCATTATGTTC 782
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 539 AAGCGTTGGAGCTAATGCCAAAGAAAGACCAATGGACGTTTAGAGTGGCTCATTATGTTC 598
Query 783 CGTGGTTGTTATATTGGTGGTTGACCCAAAAACTATTTCCGTCTTCGAGTATGGTCACGG 842
| ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||| |
Sbjct 599 CTTGGTTGTTATATTGGTGGTTGACTCAAAAACTGTTTCCGTCTTCAAGTATGATCACCG 658
Query 843 GGAACAATGCGTTATGCAGCGACAAAGATTTGGTCGTCATAAAGAAGAAAATGGAGAATC 902
|||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 659 GGAACAATGCGTTATGCAGCGATAAAGATTTGGTCATCATAAAAAAGAAAATGGAGAATC 718
Query 903 CACGCCCTGGCTTGGAAAAAGTTAGACAACAAGGAGACCATGAATGTCTTCACCGGGACA 962
|| |||||||| |||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 719 CAAGCCCTGGCATGGAAAAAGTCCGGCAACAAGGTGACCATGAATGTCTTCACCGGGACA 778
Query 963 TGATAGCCGGATTCGCGACATGGGAATTCGACCCGACTGAATTAGAAAATCCGTTTGCGG 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TGATAGCCGGATTCGCGACATGGGAATTCGACCCGACTGAATTAGAAAATCCGTTTGCGG 838
Query 1023 AAGGCGAAGGATCGGTCCACGTTTGGCAAGGGATGGAAGACAGAATCATTCCATACGAAA 1082
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 AAGGCGAAGGATCGGTCCACGTGTGGCAAGGGATGGAAGACAGAATCATTCCATACGAAA 898
Query 1083 TTAATCGATATATATCAGAGAAGCTTCCATGGATTAAGTACCATGAGGTCTTAGGTTATG 1142
|||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||| |
Sbjct 899 TTAATCGATACATATCACATAAGCTTCCATGGATTAAGTACCACGAGGTCTTAGGTTACG 958
Query 1143 GACATCTTCTAAACGCCGAGGAGGAGAAATGCAAAGACATTATCAAGGCACTTCTTGTCA 1202
||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 959 GACATCTTCTAAACGCCGAGGAGGACAAATGCAAAGAGATCATAAAGGCACTTCTTGTCA 1018
Query 1203 ACTGA 1207
|||||
Sbjct 1019 ACTGA 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5