BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22500.1
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941755 jgi|Araly1|941755|scaffold_602299.1 2355 0.0
Ahg484866 jgi|Araly1|484866|fgenesh2_kg.5__858__AT3G44540.1 872 0.0
> Ahg941755 jgi|Araly1|941755|scaffold_602299.1
Length=1522
Score = 2355 bits (1275), Expect = 0.0
Identities = 1441/1523 (95%), Gaps = 4/1523 (0%)
Strand=Plus/Plus
Query 75 TTGGTTGAGAATCATTTCATTTCAATGGAATCCAATTGTGTTCAATTTCTCGGTAACAAG 134
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGGTTGAGAATAATTTTGTTTCAATGGAATCCAATTGTGTTCAATTTCTCGGTAACAAG 60
Query 135 ACCATTCTCATCACAGGAGCTCCTGGTTTTCTTGCCAAGGTTTTGGTAGAGAAAATACTA 194
|||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 61 ACCATTCTCATCACTGGGGCACCTGGTTTTCTTGCCAAGGTTTTGGTAGAGAAAATTCTA 120
Query 195 AGGTTGCAACCAAATGTGAAGAAGATATACCTTCTGTTGAGAGCTCCCGACGAAAAATCA 254
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AGGTTGCAACCAAATGTGAAGAAGATGTACCTTCTGTTGAGAGCTCCCGACGAAAAATCA 180
Query 255 GCCATGCAACGCCTACGTAGTGAGGTTATGGAGATCGACCTTTTTAAAGTGTTGAGGAAC 314
|||||||||||| || || ||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 181 GCCATGCAACGCTTATATACTGAGGTTATAGAGATAGACCTCTTTAAAGTGTTGAGGAAC 240
Query 315 AATCTAGGAGAAGACAATTTGAATGCCTTGATGCGGGAAAAAATTGTGCCGGTTCCAGGT 374
||||||| ||||| || |||||||||||| ||||| |||||||||| ||||||||||||
Sbjct 241 GATCTAGGTGAAGAGAACTTGAATGCCTTGGTGCGGAAAAAAATTGTACCGGTTCCAGGT 300
Query 375 GATATATCGATCGATAATTTGGGATTGAAAGACACTGATCTCATACAACGTATGTGGAGT 434
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 301 GATATATCGATCGATAATTTGGGACTGAAAGACACCGATCTCATACAACGTTTGTGGAGT 360
Query 435 GAGATTGATATCATAATCAACATAGCAGCCACAACAAATTTCGATGAAAGATATGATATT 494
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 361 GAGATTGATATCATAATCAACATTGCTGCCACGACAAATTTCGATGAAAGATATGATATT 420
Query 495 GGTCTTGGCATCAACACATTTGGAGCCCTGAATGTTCTCAACTTCGCCAAAAAGTGTGTT 554
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 421 GGTCTTGGGATCAATACATTTGGAGCCCTTAATGTTCTCAACTTCGCCAAAAAGTGCGTT 480
Query 555 AAAGGACAATTGCTTCTCCATGTCTCAACCGCGTATATAAGCGGTGAACAA-CCTGGATT 613
|||||||||||||||||||||||||| ||||||||| ||||||| |||||| || || ||
Sbjct 481 AAAGGACAATTGCTTCTCCATGTCTCGACCGCGTATGTAAGCGGAGAACAATCC-GGGTT 539
Query 614 GTTACTAGAGAAACCATTCAAGATGGGGGAGACTCTCAGCGGGGATCGGGAACTAGACAT 673
|||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 540 ATTACTAGAGAAACCATTCAAGATGGGGGAGACTCTCAGCGAAAAGCGGAAACTAGACAT 599
Query 674 CAATATAGAACATGATCTAATGAAACAAAAATTGAAAGAGCTTCAAGATTGTTCTGATGA 733
||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 600 CAATATAGAACGTGAACTAATGAAACAGAAATTGAAAGAGCTTCAAGATTGTTCTGAAGA 659
Query 734 AGAGATCTCGCAAACAATGAAAGATTTTGGAATGGCAAGGGCAAAGCTTCATGGATGGCC 793
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAGATCTCACAAACAATGAAAGATTTTGGAATGGCAAGGGCAAAGCTTCATGGATGGCC 719
Query 794 AAATACATATGTATTCACCAAAGCAATGGGAGAGATGCTAATGGGAAAATACAGAGAAAA 853
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 AAATACATATGTATTCACCAAAGCAATGGGAGAGATGCTAATGGGAAAATATAGAGAAAA 779
Query 854 TTTGCCACTTGTTATCATACGTCCAACAATGATTACTAGTACTATTGCCGAACCATTCCC 913
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 TTTGCCACTTGTTATCATACGTCCAACAATGATTACTAGTACTCTTGCCGAACCATTCCC 839
Query 914 CGGTTGGATTGAAGGGTTGAAAACATTAGACAGTGTGATTGTTGCATATGGTAAAGGAAG 973
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 CGGTTGGATTGAAGGGTTGAAAACATTAGATAGTGTGATTGTTGCATATGGTAAAGGAAG 899
Query 974 GCTTAAATGTTTTCTTGCGGATTCAAACTCAGTCTTTGACCTTATACCGGCAGACATGGT 1033
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 GCTTAAATGTTTTCTTGCGGATTCAAACTCAGTTTTTGACCTTATACCGGCAGACATGGT 959
Query 1034 AGTAAATGCGATGGTTGCAGCCGCGACAGCTCATTCGGGAGACACCGGGATTCAGGCAAT 1093
|||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 960 GGTAAATGCGATGATTGCAGCCGCAACAGCTCATTGGGGAGATACCGGGATTCAGGCAAT 1019
Query 1094 ATATCATGTTGGTTCGTCTTGTAAGAATCCAGTCACGTTTGGACAACTTCACGATTTCAC 1153
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1020 ATATCATGTCGGTTCTTCTTGTAAGAATCCGGTCACGTTTGGACAACTTCACGATATCAC 1079
Query 1154 GGCTCGTTACTTCGCTAAACGTCCTTTGATTGGTCGGAATGGCTCGCCAATCATAGTGGT 1213
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1080 GGCTCGTTACTTTGCTAAACGTCCTCTGGTTGGTCGGAATGGCTCGCCAATCATAGTGAC 1139
Query 1214 CAAAGGAACCATTCTGTCCACTATGGCTCAATTCAGCCTCTACATGACCCTTCGTTACAA 1273
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CAAAGGAACCATTTTGTCCACTATGGCTCAATTCAGCCTCTACATGACCCTTCGTTACAA 1199
Query 1274 GCTTCCTCTACAGATACTTCGATTGATCAATATAGTTTATCCATGGAGTCACGGAGATAA 1333
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 GCTTCCTTTACAGATACTTCGATTGATAAATATAGTTTATCCATGGAGTCACGGAGATAA 1259
Query 1334 CTACAGTGACCTAAGCCGCAAAATCAAGCTAGCTATGCGACTAGTTGAGCTTTACCAGCC 1393
||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTACAATGACCTCAGCCGAAAAATCAAGCTAGCTATGCGACTAGTTGAGCTTTACCAGCC 1319
Query 1394 TTACTTACTCTTCAAGGGCATATTTGATGATTTAAATACCGAAAGACTGCGAATGAAAAG 1453
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1320 TTACTTACTCTTCCAGGGCATATTTGATGATTTAAATACGGAAAGACTGCGAATGAAAAG 1379
Query 1454 AAAGGAGAATATCAAAGAGTTAGATGGATCGTTCGAGTTCGATCCCAAGTCCATTGATTG 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAAGGAGAATATCAAAGAGTTAGATGGATCGTTCGAGTTCGATCCCAAGTCCATTGATTG 1439
Query 1514 GGACAATTATATCACAAACACCCACATTCCTGGCCTCATCACCCATGTGCTTAAACAATA 1573
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1440 GGACAATTATATCACAAACACACACATTCCTGGCCTCATCACCTATGTGCTTAAACAATA 1499
Query 1574 AATTATG--CTGGTAATATGTTT 1594
|||||| || ||||||||||
Sbjct 1500 AATTATATACTACTAATATGTTT 1522
> Ahg484866 jgi|Araly1|484866|fgenesh2_kg.5__858__AT3G44540.1
Length=1490
Score = 872 bits (472), Expect = 0.0
Identities = 1188/1524 (78%), Gaps = 88/1524 (6%)
Strand=Plus/Plus
Query 99 ATGGAATCCAATTGTGTTCAATTTCT-CGGTAACAAGACCATTCTCATCACAGGAGCTCC 157
||||| |||||||| |||| || || | | |||||||| |||||| |||| || | |||
Sbjct 1 ATGGAGTCCAATTGCATTCAGTTCCTCCAG-AACAAGACGATTCTCGTCACCGGTGTTCC 59
Query 158 TGGTTTTCTTGCCAAGGT-TTTGGTAGAGAAAATACTAAGG-TTGCAACCAAATGTGAAG 215
||||| || ||||| || ||| || ||||||||| | ||| || |||||||| ||||||
Sbjct 60 CGGTTTCCTCGCCAAAGTGTTT-GTGGAGAAAATATTGAGGATT-CAACCAAACGTGAAG 117
Query 216 AAGATATACCTTCTGTTGAGAGCTCCCGACGAA-AAATCAGCCATGCAACGCCTACGTAG 274
||| | | |||| | |||||||| | ||| || |||||||||||||||| | | ||
Sbjct 118 AAGCTTTTCCTTTTCTTGAGAGCAGCAGAC-AATGAATCAGCCATGCAACGGTTTCACAG 176
Query 275 TGAGGTTATGGAGATCGACCTTTTTAAAGTGTTGAGGAACAATCTAGGAGAAGACAAT-T 333
||||||| |||||| || ||||||| ||||||||||||| | |||| || || ||| |
Sbjct 177 TGAGGTTTTGGAGAAAGATCTTTTTAGAGTGTTGAGGAACGCTTTAGGTGATGAGAATCT 236
Query 334 TGAATGCCTT-G-ATGCGGGAAAAAATTGTGCCGGTTCCAGGTGATATATCGA-TCGATA 390
||| || || | || | |||||| | || || || | |||||||| || | | ||||
Sbjct 237 GGAA-GCTTTAGTAT-C-AGAAAAAGTCGTCCCTATTGCGGGTGATATTTC-AGTTGATA 292
Query 391 ATTTGGGATTGAAAGACACTGATCTCATACAACGTATGTGGAGTGAGATTGATATCATAA 450
|| ||||| |||| || |||||||| |||||| |||||||| |||||| ||||||||
Sbjct 293 ATCTGGGAGTGAAGGATTCTGATCTCTTACAACATATGTGGAATGAGATCGATATCATTG 352
Query 451 TCAACATAGCAGCCACAAC-AAATTTCGATGAAAGATATGATATTGGTCTTGGCATCAAC 509
|||| | || |||||||| || ||| ||||||||||||||| | |||||| |||||||
Sbjct 353 TCAATGTCGCCGCCACAACTAACTTT-GATGAAAGATATGATGTCGGTCTTAGCATCAAT 411
Query 510 ACATTTGGAGCC-CTGAATGTTCTCAACTTCGCCAAAAAGTGTGTTAAAGGACAATTGCT 568
||||||||| || || ||||| |||||||| ||||| ||||||||||||||||| ||| |
Sbjct 412 ACATTTGGA-CCGCTCAATGTCCTCAACTTTGCCAAGAAGTGTGTTAAAGGACAGTTGGT 470
Query 569 TCTCCATGTCTCAACCGCGTATATAAGCGGTGAACAA-CCTGGA-TTGTTACTAGAGAAA 626
|||||||||||||||||||||| | |||| | | || ||||| || |||| |||||||
Sbjct 471 TCTCCATGTCTCAACCGCGTATGTGTGCGGAG-AGAAGTCTGGACTT-TTACAAGAGAAA 528
Query 627 CCA-TTCAAGATGGGGGAGAC-TCTCAGCGGGGATCGG-GAACTAGACATCAATATAGAA 683
|| ||| | ||||| || || | | | ||| || || || ||| ||| | | | |
Sbjct 529 ACATTTC-ACATGGGAGAAACGT-TGAACGGACAT-GGAAAATTAGTCATTGAGACCG-A 584
Query 684 CAT-GATCTAATGAAACAAAAATTGAAAGAGCT------TCAAGATTGTTCTGATGAAGA 736
| || ||||||||||||||| ||||||| || ||||||||||| || |||||
Sbjct 585 GGTGGAGCTAATGAAACAAAAACTGAAAGAACTACAGAAACAAGATTGTTCGGAAGAAGA 644
Query 737 GATCTCGCAAACAATGAAAGATTTTGGAATGGCAAGGGCAAAGCTTCATGGATGGCCAAA 796
||| || || | ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 645 GATTTCACAGTCTATGAAAGATCTTGGAATGTCAAGGGCAAAGCTTCATGGATGGCCAAA 704
Query 797 TACATATGTATTCACCAAAGCAATGGGAGAGATGCTAATGGGAAAAT-ACAGAGAAAAT- 854
|||||||| || |||||| |||||||||||||||| | || || | | |||||||||
Sbjct 705 CACATATGTCTTTACCAAATCAATGGGAGAGATGCTTCTTGGTAA-TCATAGAGAAAATC 763
Query 855 TTGCC-ACTTGTTATCATACGTCCAACAATGATTACTAGTACTATTGCCGAACCATTCCC 913
|| || | |||||||||| || || |||||||||||||||||| ||||||||||||| ||
Sbjct 764 TT-CCTA-TTGTTATCATCCGCCCCACAATGATTACTAGTACTCTTGCCGAACCATTTCC 821
Query 914 CGGTTGGATTGAAGGGTTGAA-AAC-ATTAGACAGTGTGATTGTTGCATATGGTAAAGGA 971
||||||||| |||||||| || ||| || ||| |||||||||||||||||||| ||||||
Sbjct 822 CGGTTGGATCGAAGGGTT-AAGAACCAT-AGATAGTGTGATTGTTGCATATGGCAAAGGA 879
Query 972 AGGCTTAAATGTTTTCTTGCGGATTCAAACTCAGTCTTTGACCTTATACCGGCAGACATG 1031
|||||||||||||||||||| ||| ||||||||||| |||| |||||||| | || |||
Sbjct 880 AGGCTTAAATGTTTTCTTGCAGATCCAAACTCAGTCCTTGATCTTATACCTGTGGATATG 939
Query 1032 GTAGTAAATGCGATGGTTGCAGCCGCGACAGCT-CATTC-GGGA-GACACCGGGAT-TCA 1087
|| | ||| || ||||| | || | | || | || | |||| | | || | |||
Sbjct 940 GTCGCAAACGCAATGGTCACGGCTGTGGCAA-TACACGCAGGGAAGTTA--GGC-TCTCA 995
Query 1088 GGCAATATATCATGTTGGTTCGTCTTGTAAGAATCC-AGTCACGTTTGGACA-ACTTCAC 1145
| | | || ||||| || || ||||||||||| || | | || || | ||| | |||||
Sbjct 996 GACCGTGTACCATGTCGGATCATCTTGTAAGAACCCGA-TAACATTCGAACAGA-TTCAC 1053
Query 1146 GATTTCACGGCTCGTTACTTCGCTAAACGTCCT-TTGATTGGTCG-GAATGGCTCG-CCA 1202
||| || | ||||| |||||| | ||| |||| ||| |||| || || ||| || |||
Sbjct 1054 GATCTCGCAGCTCGCTACTTCACCAAAAATCCTCTTG-TTGGACGTGA-TGGTTCATCCA 1111
Query 1203 ATCATAGTGGTC-AAAGGAACCATTCT-GTCCACTATGGCTCAATTCAGCCTCTACATGA 1260
||||||| || |||||||| || || ||||||||||||||| ||||||||||||||||
Sbjct 1112 -TCATAGTC-TCGAAAGGAACTAT-CTTGTCCACTATGGCTCAGTTCAGCCTCTACATGA 1168
Query 1261 CCCTTCGTTACAAGCTT-CCTCTACAGATACTTCGATTGATCA-ATATAGTTTATCCATG 1318
|||||||||||||| || ||| |||||||||| |||||||| | || || ||||||| ||
Sbjct 1169 CCCTTCGTTACAAG-TTACCTTTACAGATACTGCGATTGAT-ATATGTAATTTATCCTTG 1226
Query 1319 GAGTCACGGAGATAACTACAGTGACCTA-AGCCGCAAAATCAAGCTAGCTATGCGACTAG 1377
| | | ||| |||| || | ||| | | ||||||||| || || || ||| | ||||
Sbjct 1227 GTGGGATGGAAATAAATATAAAGACATTGA-CCGCAAAATTAAACTGGCGATGAGGCTAG 1285
Query 1378 TTGAGCTTTACCAG-CCTTACT-TACTC-TTCAAGGGCATATTTGATGATTTAAATACCG 1434
| || || ||| || || || | | || || |||||| ||||||||||| ||||| |
Sbjct 1286 TCGACCTCTAC-AGACCGTA-TGT-CTTGTTTAAGGGCCTATTTGATGATACGAATACTG 1342
Query 1435 AAAGACTGCGAATGAAAAGAAAGGAGAATA-TCAAAGAGTTAG-ATGGATCG-TTCGAGT 1491
| | ||| || ||||||||||||||| || | ||||| | | ||| || ||||| |
Sbjct 1343 AGATACTACGGTTGAAAAGAAAGGAGATTAAT-AAAGAACT-GTATG-ATTTATTCGACT 1399
Query 1492 TCGATCCCAAGTCCATTGATTGGGACAATTATATCACAAACACCCACATTCCTGGCCTCA 1551
| ||||| ||||| |||||||||||| |||| || || | || || ||||| |||||||
Sbjct 1400 TTGATCCAAAGTCTATTGATTGGGACGATTACATGACGACCATTCATATTCCCGGCCTCA 1459
Query 1552 TCACCCATGTGCTTAAACAATAAA 1575
||||| |||| || ||| ||||||
Sbjct 1460 TCACCTATGTACTCAAATAATAAA 1483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66734109240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5