BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22510.1
Length=2191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489110 jgi|Araly1|489110|fgenesh2_kg.6__2244__AT5G22510.1 2964 0.0
Ahg928294 jgi|Araly1|928294|scaffold_300751.1 318 9e-86
> Ahg489110 jgi|Araly1|489110|fgenesh2_kg.6__2244__AT5G22510.1
Length=2108
Score = 2964 bits (1605), Expect = 0.0
Identities = 1930/2080 (93%), Gaps = 50/2080 (2%)
Strand=Plus/Plus
Query 1 TGTTTCGAAAGCAAGGGTTTTTGGACCAGTCGTCACTTTACCGGATTTTTGTTTTGGTGC 60
|||||||||| ||||||||||||||||| |||||||||||||||||| ||| | || |
Sbjct 1 TGTTTCGAAAACAAGGGTTTTTGGACCA---GTCACTTTACCGGATTTTGGTTCT-GT-C 55
Query 61 TCGACGA-C-TCTGATTCGAAAtctctctctctcGGAAAAGCTGAATCTGGATCATCAAA 118
|| | | | |||||||| ||| |||||||||| | ||||||||||||||||||||||
Sbjct 56 TCTCCAATCATCTGATTC-AAA-GTCTCTCTCTC-G-CAAGCTGAATCTGGATCATCAAA 111
Query 119 GTATCATTTTAAAGTTTGATCATTTCTTCTTTGGGTATATAGGGTAGTATTCAAAATGGC 178
|||| ||||||||||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 112 GTATTATTTTAAAGTTTGATCATTTCTTCTCTGAGTATATAGGGTAGTACTCAAAATGGC 171
Query 179 AGCTTCAGAAACAGTTCTACGTGTTCCATTAGGATCTGTATCTCAATCTTGCTATCTAGC 238
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 172 AGCTTCAGAAACAGTTCTACGTGTTCCATTGGGATCTTTATCTCAATCTTGTTATCTAGC 231
Query 239 TTCCTTCTTTGTTAACTCAACACCAAACCTCTCGTTTAAACCCGTTAGTAGAAACAGAAA 298
||| |||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 232 TTCTTTCTTTGTTAACTCCACTCCAAACCTCTCGTTTAAACCCGTTAGTATAAACAGAAA 291
Query 299 GACCGTCCGGTGTACAAACTCGCATGAGGTCTCAAGCGTA-CCAA------------A-- 343
| |||||||||||||| |||||| ||| |||||| |||| | || |
Sbjct 292 GGGCGTCCGGTGTACAAGCTCGCACGAGTTCTCAACCGTATCAAACTCCGCGGTGCGAGG 351
Query 344 ACATTCATTTCATAGTTCAAACTCTGT-TTTGAAAGGTAAAAAGTTTGTTTCCACGATAT 402
| ||||||||||||||||||||| | | |||||||||||||||||||| | | |
Sbjct 352 AAATTCATTTCATAGTTCAAACTGT-TCTTTGAAAGGTAAAAAGTTTG--T------T-T 401
Query 403 GCAAATGCCAAAAACATGATGTTGAGGAGAGTATTAGATCAACGTTACTTCCATCTGACG 462
||||||||||||||||||||||||||||||| || ||||| ||| ||||||| | | |
Sbjct 402 GCAAATGCCAAAAACATGATGTTGAGGAGAGCATCAGATCCACGGTACTTCC-T-T--C- 456
Query 463 GTTTGAGCAGTGAATTGAAAAGTGACTTAGATGAAATGCCTTTACCTGTTAATGGAAGTG 522
||| | | | |||||||| ||||| |||||||||||| |||| || |||||||||
Sbjct 457 ---TGA-C-G-G-TTTGAAAAGCGACTTGGATGAAATGCCTCTACCGGTAAATGGAAGTC 509
Query 523 TTTCATCTAATGGTAATGCACAATCAGTTGGAACAAAGTCTATTGAGGATGAAGCTTGGG 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TTTCATCTAATGGTAATGCACAATCAGTTGGAACAAAGTCTATTGAGGATGAAGCTTGGG 569
Query 583 ATCTGTTGAGGCAGTCTGTTGTTTTCTATTGTGGAAGTCCTATTGGAACTATTGCTGCTA 642
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 570 ATCTATTGAGGCAGTCTGTTGTTTTCTATTGTGGCAGTCCTATTGGAACCATTGCTGCTA 629
Query 643 ATGATCCGAACTCTACTAGTGTTTTGAATTATGATCAGGTCTTTATTCGTGATTTCATAC 702
|||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 630 ATGACCCGAGCTCTACTAGTGTTCTGAATTATGATCAGGTCTTCATTCGTGATTTCATAC 689
Query 703 CTTCGGGGATCGCCTTTCTTCTTAAAGGAGAGTATGATATTGTTCGCAATTTCATCCTTT 762
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CCTCGGGGATTGCCTTTCTTCTTAAAGGAGAGTATGATATTGTTCGCAATTTCATCCTTT 749
Query 763 ACACTCTCCAGTTACAGAGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTT 822
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 750 ACACCCTCCAGTTACAGAGTTGGGAGAAAACCATGGATTGCCATAGCCCAGGTCAAGGTT 809
Query 823 TGATGCCTTGTAGTTTCAAGGTGAAAACTGTTCCTCTCGATGGCGATGATTCAATGACCG 882
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 810 TGATGCCTTGTAGTTTCAAGGTGAAAACTGTTCCTCTTGATGGCGATGATTCAATGACCG 869
Query 883 AAGAAGTGTTAGATCCTGATTTTGGTGAAGCAGCTATTGGACGTGTTGCCCCGGTTGATT 942
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 870 AAGAAGTGTTAGATCCTGATTTTGGGGAAGCAGCTATTGGACGTGTTGCCCCGGTAGATT 929
Query 943 CTGGCTTGTGGTGGATTATTTTGTTGAGAGCATATGGAAAATGCACTGGTGATCTTTCCG 1002
|||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
Sbjct 930 CTGGTTTGTGGTGGATTATATTGTTAAGAGCATATGGAAAATGCACGGGTGATCTTTCAG 989
Query 1003 TGCAGGAAAGAGTTGATGTGCAGACTGGAATCAAGATGATCTTAAAGCTGTGTCTCGCTG 1062
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 990 TGCAGGAAAGAGTTGATGTGCAGACTGGAATCAAGATGATCTTGAAGCTGTGTCTCGCTG 1049
Query 1063 ATGGTTTCGATATGTTTCCTACTTTGTTAGTTACTGATGGGTCCTGCATGATAGACCGTC 1122
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1050 ATGGTTTCGATATGTTCCCTACTTTATTAGTCACTGATGGGTCCTGCATGATAGACCGTC 1109
Query 1123 GAATGGGAATCCATGGTCATCCCCTGGAGATTCAGGCACTCTTTTATTCGGCTTTGGTCT 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 GAATGGGAATCCATGGTCATCCCCTGGAGATTCAGGCACTCTTTTATTCGGCTTTGGTCT 1169
Query 1183 GCGCTCGTGAGATGCTTACGCCAGAGGACGGGTCAGCTGATCTAATCCGAGCTCTCAACA 1242
| || ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1170 GTGCACGTGAGATGCTTACGCCAGAGGATGGGTCAGATGATCTAATCCGAGCTCTCAACA 1229
Query 1243 ATCGTCTTGTTGCTTTAAATTTCCACATCAGGGAATACTACTGGTTGGACCTGAAAAAGA 1302
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1230 ATCGTCTTGTTGCATTGAATTTCCACATCAGGGAATACTACTGGTTGGACCTGAAAAAAA 1289
Query 1303 TTAATGAAATATACCGTTACCAGACCGAGGAATACTCTTACGATGCGGTTAATAAATTCA 1362
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1290 TTAACGAAATATACCGTTACCAGACGGAAGAATACTCTTACGATGCGGTTAATAAATTCA 1349
Query 1363 ACATATATCCAGATCAGATCCCTTCATGGTTAGTGGACTTTATGCCGAACAGAGGAGGAT 1422
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1350 ACATATATCCAGATCAGATCCCTTCATGGTTAGTGGACTTTATGCCCAACAGAGGAGGGT 1409
Query 1423 ATTTGATTGGAAACCTTCAGCCTGCTCACATGGATTTCAGATTCTTTACTCTGGGGAACC 1482
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1410 ATTTGATTGGAAACCTTCAGCCCGCCCACATGGATTTCAGATTCTTTACTCTGGGGAACC 1469
Query 1483 TTTGGTCTATAGTGAGCAGTTTGGCTTCAAATGATCAATCACATGCAATTCTTGATTTCA 1542
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||
Sbjct 1470 TTTGGTCTATAGTGAGCAGTTTGGCTACAAATGATCAGTCACATGCAATTCTTGATCTCA 1529
Query 1543 TCGAAGCCAAATGGGCAGAACTTGTAGCAGACATGCCACTTAAGATCTGTTACCCTGCTA 1602
| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 1530 TTGAAGCCAAATGGGCAGAGCTTGTAGCAGACATGCCGCTCAAGATCTGTTACCCTGCTA 1589
Query 1603 TGGAAGGTGAAGAATGGCGAATTATAACCGGAAGTGATCCAAAGAATACTCCTTGGTCTT 1662
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1590 TGGAAGGTGAAGAATGGCGAATTATAACCGGAAGTGATCCAAAGAACACTCCTTGGTCTT 1649
Query 1663 ATCACAATGGAGGTGCATGGCCAACTCTGCTATGGCAGCTGACAGTTGCAAGCATCAAAA 1722
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1650 ATCACAATGGAGGTGCATGGCCAACTCTGTTATGGCAGCTGACAGTAGCAAGCATCAAAA 1709
Query 1723 TGGGTAGACCAGAGATTGCAGAAAAGGCGGTTGAGTTAGCCGAGAGACGGATTTCCTTAG 1782
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710 TGGGTAGACCAGAAATTGCAGAAAAGGCGGTTGAGTTAGCCGAGAGACGGATTTCCTTAG 1769
Query 1783 ACAAATGGCCCGAGTACTACGATACCAAAAGAGCAAGATTCATCGGTAAACAGGCACGGC 1842
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1770 ACAAATGGCCTGAGTACTACGATACCAAAAGAGCAAGATTTATCGGTAAACAGGCACGGC 1829
Query 1843 TATACCAGACTTGGTCCATCGCAGGTTACCTAGTGGCCAAGCTCCTCTTAGCAAATCCAG 1902
| ||||||||||||||||| ||||||||||| |||||||||||||| || ||||||||||
Sbjct 1830 TTTACCAGACTTGGTCCATTGCAGGTTACCTCGTGGCCAAGCTCCTTTTGGCAAATCCAG 1889
Query 1903 CTGCAGCAAAGTTCCTCACTAGTGAAGAGGATTCGGATTTGAGAAACGCATTCTCTTGCA 1962
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1890 CTGCAGCAAAATTCCTCACTAGTGAAGAGGATTCAGATTTGAGAAACGCATTCTCTTGCA 1949
Query 1963 TGCTCAGCGCTAACCCGAGGAGGACAAGAGGACCCAAAAAAGCTCAACAACCATTTATTG 2022
|| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1950 TGTTCAGCGCTAACCCGAGAAGGACAAGAGGACCCAAAAAGGCTCAACAACCATTTATTG 2009
Query 2023 TATGAGAGGCTCAGACTTATTTATTTCAAAGTGAGCCATG 2062
||||||| |||||||||||||| |||||||||||||||||
Sbjct 2010 TATGAGAAGCTCAGACTTATTT-TTTCAAAGTGAGCCATG 2048
> Ahg928294 jgi|Araly1|928294|scaffold_300751.1
Length=2011
Score = 318 bits (172), Expect = 9e-86
Identities = 907/1251 (73%), Gaps = 94/1251 (8%)
Strand=Plus/Plus
Query 666 TTGAATTATGATCAGGTCTTTATTCGTGATTTCATACCTTCGG-GGATCGCCTTTCTTCT 724
||||||||||||||||| |||||||| ||||| | ||||||| | || || ||| | ||
Sbjct 633 TTGAATTATGATCAGGTGTTTATTCGCGATTTTGTTCCTTCGGCGTAT-GCTTTTATGCT 691
Query 725 TAAAGGAG-AGTATGATATTGTTC-GCAA-TTTCATCCTT--TACACTCTCCAGTTACAG 779
| | |||| || || |||| || | || |||| | ||| |||| | | ||||| |||
Sbjct 692 TGATGGAGAAG-GGGAGATTG-TCAGAAACTTTC-TTCTTCATACA-T-TGCAGTTGCAG 746
Query 780 AGTTGGGAGAAAACCATGGATTGCCATAGTCCAGGTCAAGGTTTGATGCCTTG-TAGTTT 838
|| ||||||||||| |||| || || || || || | ||| | ||||| | |||||
Sbjct 747 AGCTGGGAGAAAACGGTGGACTGTCACAGCCCTGGCCCAGGGCTAATGCC-AGCGAGTTT 805
Query 839 CAAGGTGAAAACTGTTCCTCTCGATGG---CGATGATTCAATGACCGAAGAAG-TGTTAG 894
|| |||||| ||| || || || || |||| ||| || | || || | ||||
Sbjct 806 TAAAGTGAAATCTGAGCCACTTGAGGGAAATGATGGTTC-AT--TTG-AGGAGTTTTTAG 861
Query 895 ATCCTGATTTTGGTGAAGCAGCTATTGGACGTGTT-GCCCCGGTTGATTCTGGCTTGTGG 953
|||| || ||||||| | |||| ||||| |||||| | ||| ||||| ||||| ||||||
Sbjct 862 ATCCAGACTTTGGTGGATCAGCCATTGGGCGTGTTAG-CCCTGTTGACTCTGGTTTGTGG 920
Query 954 TGGATTATTTTGTTGAGAGCATATGGAAA-ATGCACTGGTGATCTTTC-CG-TGCAGGAA 1010
||||| || ||| ||||||| |||||||| | ||| ||||| | | | | |||| ||
Sbjct 921 TGGATCATATTGCTGAGAGCTTATGGAAAGCT-CACGGGTGA-C-TACATGTTGCAAGAG 977
Query 1011 AGAGTTGATGTGCAGACTGGAATCAAGATGAT-CTTAAAGCTGTGTCTCGCTGATGG-TT 1068
|| ||||||| || || || |||||| |||| | ||||||||||||| || ||||| ||
Sbjct 978 CGAATTGATGTTCAAACAGGGATCAAGTTGATAC-TAAAGCTGTGTCTAGCCGATGGCTT 1036
Query 1069 TCGATATGTTTCCTACT-TTGTTAGTTACTGATGGGTCCTGCATGATAGACCGTCGAATG 1127
| || ||||| || ||| || || || ||||| || || || ||||| || || |||||
Sbjct 1037 T-GACATGTTCCCGACTCTTCTT-GTGACTGACGGATCATGTATGATTGATCGAAGAATG 1094
Query 1128 GGAATCCATGGTCATCCCCTGGAGATTCAGGCACTCTTTTATTCGGCT-TTGGTCTGCGC 1186
|| || ||||| ||||| || || || || ||| | || || || ||| | | ||| ||
Sbjct 1095 GGCATTCATGGGCATCCACTTGAAATCCAAGCATTGTTCTACTCTGCTCTCCG-CTGTGC 1153
Query 1187 TCGTGAGATGCTTA-CGCCAGAGGACGGGTCAGC-TGATC-TA-AT-CCGAGCTCTCAAC 1241
|| ||| |||||| | | | || || | | || | || | | | | | | |||
Sbjct 1154 CCGAGAGGTGCTTATTGTGA-ATGA-TGG-AACCAAGAACTTAGTTGCTGCGGT-T-AAC 1208
Query 1242 AATCGTCT-TGTTGCTTTAAATTTCCACATCAGGGAATACTACTGGTTGGACCTGAA-AA 1299
||||| || | ||||||| ||||| ||||| || ||||| ||| |||| | || ||
Sbjct 1209 AATCGCCTAAG-TGCTTTATCGTTCCATATCAGAGAGTACTATTGGGTGGATATCAAGAA 1267
Query 1300 AGATTAATGAAATATACCGTTACCAGACCGAGGAATACTCTTA-C-GATGCGGTTAATAA 1357
| || || || |||||||||||| | || ||||| || | | | | ||||| || ||
Sbjct 1268 A-ATCAACGAGATATACCGTTACAACACTGAGGAGTA-T-TCAGCAGATGCAACCAACAA 1324
Query 1358 ATTCAACATATATCCAGATCAGATCCCTTCATGG-TTAGTGGACTTTATGCC-GAACAGA 1415
|| ||||||||||| |||||||||||| | ||| || || |||| || || | | | |
Sbjct 1325 GTTTAACATATATCCGGATCAGATCCCTACTTGGCTT-GTCGACTGGATTCCTG-ATAAA 1382
Query 1416 GGAGGATATTTGATTGGAAACCTTCAGCCTGCTCACATGGATTTCAGATTCTTTACTCTG 1475
|| || || || || ||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1383 GGCGGTTACTTCATAGGAAATCTTCAGCCTGCTCACATGGATTTCAGATTCTTCACGCTT 1442
Query 1476 GGGAACCTTTGGTCTAT-AGTGAGCAGT-T-TGGCTT-CAAATGATCA-ATC-ACATGCA 1529
|| ||||| ||| | | | | || | | ||| | || || || | | | | | |
Sbjct 1443 GGAAACCTCTGGGCCGTTATTT--CA-TCTCTGGGAAACCAA-GAACAGAACGA-AGG-A 1496
Query 1530 ATTCTTGATT-TCATCGAAGCCAAATGGGCA-GAACTTGTAGCAGACATGCCACTTAAGA 1587
| | ||| | ||||||| ||||||| | || ||||| ||| ||||||| || ||||
Sbjct 1497 GT-CATGACACTAATCGAAGAGAAATGGG-ATGATCTTGTTGCAAACATGCCTCTCAAGA 1554
Query 1588 TCTGTTACCCTGCTAT-G-GAAGGTGAAGAATGGCGAATTATAACCGGAAGTGATCCAAA 1645
| |||| || ||| | | ||| | | ||||||||||| || || ||| |||||||||
Sbjct 1555 TTTGTTTTCCGGCTCTAGAGAAAG--ACGAATGGCGAATAATTACTGGATCTGATCCAAA 1612
Query 1646 GAATACTCCTTGGTCTTATCACAATGGAGG-TGCATGGCCAACTCTGCTATGGCAGCTGA 1704
||| || |||||||| || |||||||| || | | ||||||||||| || |||||| | |
Sbjct 1613 GAACACGCCTTGGTCATACCACAATGGTGGATCC-TGGCCAACTCTCCTCTGGCAGTTTA 1671
Query 1705 CAGTTG-CAAGCATCAAAATGGGTA-GAC-CAGAGATTG-CAGAA-AAGGCGGTTGA-GT 1758
|| ||| | | ||||| ||||| | | | | || | || | ||| || || |||| ||
Sbjct 1672 CA-TTGGCTTGTATCAAGATGGGGAAG-CTC-GA-ACTGGC-GAAGAAAGCAGTTGCTGT 1726
Query 1759 TAGCCGAGAGACGGATTTCCTTAGACAAATGGCCCGAGTACTACGATACCAAAAGAGCAA 1818
||| |||| | || | ||| |||||||| ||||| || || || ||||| | |
Sbjct 1727 -AGCAGAGAAAAGGCTCAAGGAAGATAAATGGCCTGAGTATTATGACACGAAAAGCGGGA 1785
Query 1819 GATTCATCGGTAAACAGGCACGGCTATACCAGACTTGGTCCATCGCAGGTT 1869
||||| | || ||||| || |||| |||||||||||| ||||||||||||
Sbjct 1786 GATTCGTGGGGAAACAATCAAGGCTTTACCAGACTTGGACCATCGCAGGTT 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82465380425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5