BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22530.1

Length=668
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941757 jgi|Araly1|941757|scaffold_602301.1                        484    3e-136


> Ahg941757 jgi|Araly1|941757|scaffold_602301.1
Length=445

 Score =  484 bits (262),  Expect = 3e-136
 Identities = 393/451 (87%), Gaps = 29/451 (6%)
 Strand=Plus/Plus

Query  86   CCCCCAAGAAAAATGTCTACAGGATGTCTAAGTTGTTTCAAAGTCATGTGTTTCAAGAAG  145
            ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct  9    CCCCCCAGAAAAATGTCTAGAGGATGTCTAAGTTGTTTCAAAGTCATGTGTTTCGAGAAG  68

Query  146  AAGCAGAGCAAGAAAGAAG-CTAAACCCGTAAAAACAGAGATATTGCCAGAGCCAGTTGG  204
            ||||||| ||||||||||| | |||||||| |||||||| | ||||||||||||||||  
Sbjct  69   AAGCAGAACAAGAAAGAAGAC-AAACCCGTGAAAACAGAAAGATTGCCAGAGCCAGTT--  125

Query  205  AGAAAAAGAAGATGTAGAAAGAAAAGAAGGTATACAAGCCAAACCTCTGAGAA-CAGAG-  262
                      ||   ||  | ||||||||||||||||| ||||||||||| || ||||| 
Sbjct  126  ----------GA---AG--A-AAAAGAAGGTATACAAGACAAACCTCTGA-AAGCAGAGA  168

Query  263  GGATTGCCAGAGCCGGTAGAAAAGAAAAAGAAAGATGTAAAATACAGCGCGTGCAAGAAG  322
            || |||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||
Sbjct  169  GG-TTGCCAGAGCCGGTTGAAAAAAAAAAGAAAGATGTTAAATACGGCGCGTGCAAGAAG  227

Query  323  ATGCCCGAGAAATGCATGTTCAAACCCAAACCAGAATGGATCTCGCATGTAGGCAGCAAC  382
            ||||||||| ||||||||||||||||||||||||||||||||  |  | || |||||| |
Sbjct  228  ATGCCCGAGGAATGCATGTTCAAACCCAAACCAGAATGGATCAAG--TATA-GCAGCAGC  284

Query  383  GATGTTGGACCAAAAGTCGGCGATTTTTATGGAGATCACTACGCAGAAACAGATG-ACTC  441
            ||| |||||||||| |||  |||||| ||||||||||| |||||||||||||||| | ||
Sbjct  285  GATATTGGACCAAACGTCTACGATTTGTATGGAGATCAATACGCAGAAACAGATGTA-TC  343

Query  442  TTCTTCGTCAATGACTAATGAATTCAACAAAGTGAAGACCTTTGATATACGAGGAGTCAA  501
            |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  344  TTCTACGTCAATGAATAATGAATTCAACAAAGTGAAGACCTTTGATATACGAGGAGTCAA  403

Query  502  ACTAGCCACATCCTAGGAATAAGAGAAGAGG  532
            | |||||||  || |||||||||||||||||
Sbjct  404  AGTAGCCACGGCCAAGGAATAAGAGAAGAGG  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24513035631


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5