BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22540.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894125 jgi|Araly1|894125|Al_scaffold_0006_2121 1980 0.0
> Ahg894125 jgi|Araly1|894125|Al_scaffold_0006_2121
Length=1320
Score = 1980 bits (1072), Expect = 0.0
Identities = 1243/1326 (94%), Gaps = 9/1326 (1%)
Strand=Plus/Plus
Query 86 ATGGATCCACAGATTGTTGTAGACATAAAGAGTTTAATCTCAGAAGATAATGGTTTGAAG 145
||||||||||||||||||||| ||||||| | |||||||||| |||||||||| |||||
Sbjct 1 ATGGATCCACAGATTGTTGTAAACATAAATAACTTAATCTCAGCAGATAATGGTCTGAAG 60
Query 146 CTTCTTAGAGAATCAGCTGGTTCAGAGTTATGTTGCATCGTGAGAATCCCACAGAGCCTC 205
||||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 61 CTTCTGAGAGAATCAGCTGGATCAGAGTCATGTTGCAACGTGAGAATCCCACAGAGCCTA 120
Query 206 GCTCGAATCAACCTCAAAGCTTATGAACCGAAGATTGTCTCCATTGGTCCTTACCATCAC 265
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCTCGAATCAACCTCAAAGCTTACGAACCCAAGATTGTCTCCATTGGTCCTTACCATCAC 180
Query 266 GGCAAAGAGCATCTCAAAATGACTCAGCAGCATAAACGCCGATTCTTGAAGTTTTTCGTG 325
|||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 181 GGCAAAGAACATCTCAAAATGACTCATCAGCACAAACGCCGCTTCTTGAAGTTTTTCGTG 240
Query 326 GCTAAAATGGAAGAAAAAGGAT-TTGTTCCTCAAGAATTGGTCAAAGCTGTATCGAGTTT 384
||||||||||||| |||||| | ||| ||||||||||||||||||||||||||| |||||
Sbjct 241 GCTAAAATGGAAG-AAAAGGGTATTGATCCTCAAGAATTGGTCAAAGCTGTATCAAGTTT 299
Query 385 GGAAGGAGTTATACGAGGTTCTTACTCCGAGGATCTAGGTTTAGATTCTGAAAACTTGGT 444
||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 300 GGAAGGAGTTATAAGAGGTTCTTACTCCGAGGATCTTGGTTTAGATCCTGAAAAATTGGT 359
Query 445 TCAGATGATGGTTCTTGATGGTTGCTTTATCCTCACGTTGTTCTTTGTTGTTTCCGGGAA 504
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGAGATGATGGTTCTTGATGGTTGCTTTATCCTCACGTTGTTCTTTGTTGTTTCCGGGAA 419
Query 505 AGTTGAATACACTAATCTTGATGATCCGATTTTTC-GAATGCCGTGGATTTTGCCGTCGA 563
||||| ||||| |||||||||||||| | ||||| ||||||| |||||||| |||||||
Sbjct 420 AGTTGTTTACACCAATCTTGATGATCCTA-TTTTCAGAATGCCATGGATTTTACCGTCGA 478
Query 564 TTCGAGCAGATCTTCTCCTTTTGGAAAACCAGGTTCCTTATGTTCTTCTTCAAACTCTAT 623
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 479 TTCGAGCGGATCTTCTCCTTTTGGAAAACCAGGTTCCTTTTGTTCTTCTTCAAACTCTAT 538
Query 624 TTGAAACATCGAAGTTAGTTACTTGTAGTGGTTTAAACGAAATCGCCTTTGAATTCTTTA 683
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCGAAACATCGAAGTTAGTTACTTGTAGTGGTTTAAACGAAATCGCCTTTGAATTCTTTG 598
Query 684 ACTACTCATTACAAAAACCAGAGACCTTTTGGGAAAAACATTATGGTCTTGAAGCAAAAC 743
||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 599 ACTACTCATTACAAAGACCTGAGACGTTTTGGGCAAAACATTATGGTCTTGAAGCAAAAC 658
Query 744 ATCTTCTTGATTTGATACGTAAGACTTTTGTTCCTGTTCCGTCTCAAAGAAGAATCAAAG 803
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 659 ATCTTCTTGATTTGATACGTAAGACTTTTGTTCCCGTTCCGTCTCAAAGAAGCATCAAAG 718
Query 804 ATCATAGCAGTAAATCGTCATTCAATGATCATGAATATCTCGGATTTGTTCTCTCTGCCA 863
||| | | ||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 719 ATC--A-CCGTAAATCGTCATTCAATGATCATGAATTTCTCGGATTCGTTCTCTCAGCCA 775
Query 864 AGAAGCTTCATCTTCGGGGAATCAAATTCAAACCGAGGAAAAACACAGACTCAATCTTAG 923
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 776 AGAAGCTTCATCTTCGGGGAATCAAATTCAAACCGAGGAAGAACACAGACTCAATCTTAG 835
Query 924 ACATTAGTTATAGTAATGGTGTGCTTCACATTCCTCCGGTAGTCATGGATGATTTTACCG 983
|||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 836 ACATAAGGTATAGTAATGGTGTGCTTCATATTCCTCCGGTAGTCATGGATGATTTTACTG 895
Query 984 CCTCGATCTTTTTAAACTGTGTCGCATTTGAGCAATTATATGCTGATTCATCGAACCACA 1043
||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 896 CCTCGGTCTTCTTAAATTGTGTTGCATTTGAGCAATTATATGCTGATTCATCGAACCACA 955
Query 1044 TAACGAGCTACGTAGCTTTCATGGCTTGTCTTATAAACGAAGAGAGTGATGCATCGTTCC 1103
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 956 TAACGAGCTACGTAGCTTTCATGGCTTGTCTTATAAACGAAGAGAGCGATGCGGCGTTCC 1015
Query 1104 TTAGC-GAAAGGAGGATCCTAGAGAACTATTTTGGAACAGAGGATGAAGTGTCCCGGTTC 1162
||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1016 TTA-CTGAAAGAAGGATCCTAGAAAACTATTTTGGAACAGAGGATGAAGTGTCCCGGTTT 1074
Query 1163 TATAAACGCATTGGTAAAGACATTGCCCTCGACTTAGAGAAGAGTTACCTAGCAAAGGTG 1222
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1075 TATAAACGCATTGGTAAAGACATTGCTCTCGACTTAGAGAAGAGTTACTTAGCAAAGGTG 1134
Query 1223 TTTGAAGGAGTTAACGAGTATACTTCTCAAGGATTCCATGTTCATTGTGCAGAGTTTATT 1282
||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||||
Sbjct 1135 TTTGAAGGAGTTAACGAGTATACTTCTAAAGGATTTCATGTTCACTGCGCAGAGTTTATT 1194
Query 1283 CATACGCATTTCGATAGTCCATGGACATTTGCATCATCATTTGCAGCGTTGTTGCTTCTT 1342
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1195 CACACGCATTTCGATAGTCCATGGACATTTGCGTCGTCATTTGCAGCGTTGTTGCTTCTT 1254
Query 1343 CTGTTTGCGGCTTTGCAAGTCTTCTTTGCAGCTTATAGTTATTTCCGTCCTCCAAAAGAA 1402
||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |
Sbjct 1255 ATGTTTGCAGCTTTGCAAGTCTTCTTTGCAGCTTATAGTTATTTCTGTCCTCCGAAAGGA 1314
Query 1403 AAGTGA 1408
||||||
Sbjct 1315 AAGTGA 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5