BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22545.1

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941759 jgi|Araly1|941759|scaffold_602303.1                        444    4e-124


> Ahg941759 jgi|Araly1|941759|scaffold_602303.1
Length=364

 Score =  444 bits (240),  Expect = 4e-124
 Identities = 327/367 (89%), Gaps = 13/367 (4%)
 Strand=Plus/Plus

Query  42   AAAATCAAGAAAATGTGTAGAGGATGTCCAAGTTGTCTCAACATCATGTGTTTGAGAAAG  101
            ||||||  |||||||| || ||||||||||||||||||||||||||| ||||||||   |
Sbjct  10   AAAATC-TGAAAATGTCTAAAGGATGTCCAAGTTGTCTCAACATCATATGTTTGAG---G  65

Query  102  AAGCAGCAGAAGAATAAGAAGAAGGAGCAGAGTAAGAAACAACACACACCTGTGAAAACA  161
            ||| |  || ||    ||  |||||||||||||||||||||||| | ||||| |||||||
Sbjct  66   AAG-A--AGCAG----AG--GAAGGAGCAGAGTAAGAAACAACAGAAACCTGGGAAAACA  116

Query  162  GAGGATATGGTTGAGCCACTAGGAATAAAAGATGATGAAGAAGAAAGCCTGGACAAGAAG  221
            |||||| ||||||||||| ||||| ||| ||||||||||||| |||||||||| ||||||
Sbjct  117  GAGGATGTGGTTGAGCCAGTAGGAGTAAGAGATGATGAAGAACAAAGCCTGGAAAAGAAG  176

Query  222  ATGAACATCACGGGAACAATGGGATATGTCCGGCCTGAATATATGTCTACTAATGACAGT  281
            | ||||||||||||||||||||||||| | || |||||||||||||||| | |||||| |
Sbjct  177  ACGAACATCACGGGAACAATGGGATATTTTCGACCTGAATATATGTCTAGTTATGACAAT  236

Query  282  TTTTATCGAAAACTTGGGGAAGGTGATTCTTCTTCATCCTTGAAAAATGATTTCAACAAA  341
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  TTTTATGGAAAACTTGGGGAAGGTGATTCTTCTTCATCCTTGAAAAATGATTTCAACAAA  296

Query  342  GTGAAGACCTTTGATTTACGAGGAGTGaaaaaaaCAGAGGAGAAGTAAGGAAAAAGTTGG  401
            |||||||||||||||||||||||||||  |||||||||| |||||||||||| ||| |||
Sbjct  297  GTGAAGACCTTTGATTTACGAGGAGTGGCAAAAACAGAGAAGAAGTAAGGAAGAAGATGG  356

Query  402  GACTTGA  408
            |||||||
Sbjct  357  GACTTGA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20413240115


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5