BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22550.2
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489113 jgi|Araly1|489113|fgenesh2_kg.6__2247__AT5G22550.2 2128 0.0
Ahg489115 jgi|Araly1|489115|fgenesh2_kg.6__2249__AT5G22560.1 398 8e-110
> Ahg489113 jgi|Araly1|489113|fgenesh2_kg.6__2247__AT5G22550.2
Length=1509
Score = 2128 bits (1152), Expect = 0.0
Identities = 1400/1519 (92%), Gaps = 20/1519 (1%)
Strand=Plus/Plus
Query 13 TAAGAAGAGAGCCATGGATCCTCCCAGCCAAGCAAACGGAGAGAGTGCCACGATCCCAGA 72
||| ||||||||||||||||||||||||||||| | | |||||||||||||||||| ||
Sbjct 1 TAACAAGAGAGCCATGGATCCTCCCAGCCAAGCCAGTGAAGAGAGTGCCACGATCCCGGA 60
Query 73 CGAAAACGAAGAAGAAGCTTATTTGCTCTTAGATAAAGTGATCCCACCAGTCCATCTCAA 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CGAAAACGAAGAAGAAGCTTATTTGCTCTTAGATAAAGTGATCCCACCAGTCCATCTAAA 120
Query 133 GGAATCAGCAGGTGATAGATTTTGTTGCATCTACAGAATCCCTCACACTCTCAAGCAAGT 192
|||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||
Sbjct 121 GGAATCAGCAGGTGATAGATCTTGTTGCATCTATAGAATCCCTCACACTCTCGAGCGAGT 180
Query 193 CAACGACAAAGCTTATGCACCTAAGATCGTTTCAATAGGTCCTTATCACCATTCGAGTGA 252
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 181 CAACGACAAAGCTTATGCACCCAAGATCGTTTCAATAGGCCCTTATCACCATTCAAGTGA 240
Query 253 TAAACAACATCTCAAGATGATAGAGGAGCACAAGAAACGTTATTTGGAGATGTTCGTGTC 312
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 241 TAAACAACATCTCAAGATGATAGAGGAGCATAAAAAACGTTATTTGGAGATTTTCGTGTC 300
Query 313 AAAGACTAAGGAAAATGGTGTGTATTTAATTCACTTAGTCGATCTAGTCTCGGGATTGGA 372
|||||||||||| |||||||| |||||| ||||||||||||| | ||||| ||||||||
Sbjct 301 AAAGACTAAGGACAATGGTGTAAATTTAAGTCACTTAGTCGATGTCGTCTCAGGATTGGA 360
Query 373 ACAGAAGATAAGAGACTCCTACTCTGAGAATCTTGAATTTAGTCAACAAAAGCTGATCAA 432
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 361 ACAGAAGATAAGAGACTCCTACTCTGAGAATCTTGAATTTAGTCGACAAAAGCTTATCAA 420
Query 433 AGTGATGCTTCTTGATGGTTGTTTCATTCTTATGTTGTTCCTAGTGGTTTCACAAAAGAT 492
|||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 421 GGTGATGATTCTTGATGGTTGTTTCATTCTTATGCTGTTCCTTGTGGTTTCACAAAAGAT 480
Query 493 TGAATACACAAATCTCAAAGACCCAATTTTCAAGCTACGATGGATATTGCCAACACTTCG 552
||| ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 481 TGAGTACACAAATTTCAAAGACCCAATTTTCAATCTGCGATGGATATTGCCAACACTTCG 540
Query 553 AAGCGACCTTCTTCTTCTCGAAAACCAGGTTCCTCTCTTTCTACTTAAAGTTCTTTTAGA 612
|||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct 541 AAGCGACCTTCTTCTTCTCGAAAACCAGCTTCCTCTCTTTCTTCTTGAAGTTCTTTTAGA 600
Query 613 GACATCAAAGTTAGCTCCATCCACTAGCTTGAACATGTTGGCCTTCAAATTCTTCGACTA 672
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 601 GACATCAAAGTTAGCTCCATCCACTAGCTTAAACATGTTGGCCTTCAAATTCTTCAACTA 660
Query 673 CTCCATaaaaaaaCCAGAAGGGTTCTGGGAGAAACACAACAATCTTCGAGCAAAACATCT 732
||| ||||||||| |||| | |||||| |||| ||||||||||||||||||||||||||
Sbjct 661 CTCAATAAAAAAAACAGATGATTTCTGGAAGAAGCACAACAATCTTCGAGCAAAACATCT 720
Query 733 TCTTGATCTTATTCGTAAGACTTTCATACCCGCCCCGCCTCCATCAACCACCCCCAGGCA 792
||||||||| |||||||||||||||| ||||| |||||||||| |||| | || |||||
Sbjct 721 TCTTGATCTCATTCGTAAGACTTTCAAACCCGTCCCGCCTCCACCAACAATTCCAAGGCA 780
Query 793 ATGTTGTATCAATATTTTCAATGGTCCTAGGGAATATTCAAGAACAGAGACATCCAAAAA 852
|||||||||||||||||||| || | || |||||||||| |||||||| |||||
Sbjct 781 ATGTTGTATCAATATTTTCAG-GG----A---AA-ATTCAAGAACCGAGACATCTAAAAA 831
Query 853 TATTTGTCTCGGTAAGATAAGTTGTTCAAAGGAGATAACGGGAGCGCAAACATCATCGCC 912
|| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 832 TACTTGTCTCGGTAAGATAAGTTGCTCAAAGGAGATAACTGGAGCGCAAACATCATCGCC 891
Query 913 TCCTC--C-TCCTCCTCGTCGTCCTTTTCTTGGGCTAATTGTCTCAGCAAGAAAACTACG 969
||||| | |||||||| ||| |||||||||||||||||||| ||||| |||||||| |
Sbjct 892 TCCTCTTCCTCCTCCTCCTCGACCTTTTCTTGGGCTAATTGTGTCAGCCAGAAAACTTCA 951
Query 970 ACTTCGGGGAATAAAATTTATGCGGAAGGAGAATGTTGAGACACCGTTAGACATAAGTTT 1029
|||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||
Sbjct 952 ACTTCGGGGAATAAAATTCAAGCGGAAGGAGAATGTAGAGACACCGTTAGACATCAGTTT 1011
Query 1030 CAAGAGTGGT-TTGGTTGAAATACCACTACTAGTGTTTGACGACTTTATCAGCAATCTTT 1088
|||||| ||| || ||||| |||||||||| || ||||| ||||||||||||| |||
Sbjct 1012 CAAGAGCGGTATTC-TTGAAGTACCACTACTTGTCTTTGATGACTTTATCAGCACTCTAC 1070
Query 1089 TGATCAACTGTGTTGCCTTTGAGCAGTTTAATATGAGCTGCTCCACTGAGATTACTAGCT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 TGATCAACTGTGTTGCCTTTGAGCAGTTTAATATGAGCTGCTCCACTGAGATTACTAGCT 1130
Query 1149 TTGTAATTTTCATGGGTTGCTTGATCAACACAGAAGACGATGCGACTTTCTTAATCGAGA 1208
||||| |||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 1131 ATGTAACTTTCATGGGTTGCTTGATAAACACAGAAGAGGATGCGACCTTCTTAATCGAGA 1190
Query 1209 AAGGGATCTTAGAGAACTATTTTGGAACGGGTGAAGAAGTTTCTTTATTTTTTAAGAACA 1268
|||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||||
Sbjct 1191 AAGGGATCTTAGAGAACTATTTCGGAACGGGTGAACAAGTTTCTTTATTCTTCAAGAACA 1250
Query 1269 TTGGAAAAGACATCTCATTCAGCATATCCAAGAGTTT-CTTGTCAAATGTGTTCGAGGGA 1327
|||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1251 TTGGGAAAGACATCTCATTCAGCATATCCAAGAGTTTTCTA-TCAAAAGTGTTCGAGGGA 1309
Query 1328 GTGAATGAGTACACTTCACAAGGATACCACGTACACTGGGCAGGGTTCAAGTACACACAT 1387
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1310 GTGAACGAGTACACTTCACAAGGATACCACGTACAATGGGCAGGGTTCAAGTACACACAT 1369
Query 1388 TTCAACACTCCATGGACATTTCTATCATCTTGTGCTGCTTTGGTGCTTCTTCTCCTTACC 1447
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1370 TTCAACACTCCATGGACATTTTTATCATCTTGTGCTGCTTTGATGCTTCTTCTCCTTACC 1429
Query 1448 ATTTTCCAAGCCTTCTTTGCAGCTTATGCTTACTTTCGTCCTCCCAAAAACAATTGAA-T 1506
|||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1430 ATTTTCCAAGCCTTCTTTGCAGCTTATGCTTACTTTCGTCCTCCCAAAAACAGTT-AACT 1488
Query 1507 AGTA-GTGTCTTCTTTATC 1524
||| | | || |||||||
Sbjct 1489 -GTAAGGGCCTCCTTTATC 1506
> Ahg489115 jgi|Araly1|489115|fgenesh2_kg.6__2249__AT5G22560.1
Length=1617
Score = 398 bits (215), Expect = 8e-110
Identities = 466/585 (80%), Gaps = 25/585 (4%)
Strand=Plus/Plus
Query 923 CCTCGTCGTCCTTTTCTTGGGCTAATTGTCTCAGCAAGAAAACTACGACTTCGGGGAATA 982
|||| ||||||||| || | | |||||||||| |||||||| | ||| || ||||||
Sbjct 1002 CCTCCTCGTCCTTTCCTCAAGTTGGTTGTCTCAGCCAGAAAACTTCAACTCCGAGGAATA 1061
Query 983 AAATT-TATGCGGAAGGAG-AATGTTGAGACACCGT-TAGACATAAGTTTCAAGAGTGGT 1039
||||| | | ||| || ||| || ||||||| | | |||||| | |||||| |||
Sbjct 1062 AAATTCCA-ACAAAAGAAGAAAT-TTCAGACACC-TCTTCACATAACTCTCAAGAACGGT 1118
Query 1040 TTGGTTGAAATACCACTACTAGTGTTTGACGACTTTATCAGCAATCTTTTGATCAACTGT 1099
| | ||||||| | |||| | ||||| |||||| ||||| |||||| ||||||||
Sbjct 1119 GTACTAAAAATACCGCCACTACTATTTGATGACTTTTTCAGCTCTCTTTTAATCAACTGC 1178
Query 1100 GTTGCCTTTGAGCAGTTTAATATG--AGCTGCTCCACTGAGATTACTAGCTTTGTAATTT 1157
|| ||||||||||| |||||| || || || | || || || || |||| ||| | ||
Sbjct 1179 GTCGCCTTTGAGCAATTTAATGTGCAAG--GCACAACCGAAATGACGAGCTATGTTACTT 1236
Query 1158 TCATGGGTTGCTTGATCAACACAGAAGACGATGCGACTTTCTTAATCGAGAAAGGGATCT 1217
||||||| ||| | || || || | ||| ||||| || ||||||| ||||||||| |||
Sbjct 1237 TCATGGGCTGCCTCATAAATACTGCAGATGATGCAACGTTCTTAAGCGAGAAAGGTATCA 1296
Query 1218 TAGAGAACTATTTTGGAACGGGTGAAGAAGTT-TCTTTATTTTTTAA-GA-ACATTGGAA 1274
|||||||||||||||||||||| ||| || || || | || || || || ||| || |
Sbjct 1297 TAGAGAACTATTTTGGAACGGGAGAACAA-TTATCCGTGTTCTTCAAGGATACA--GGTA 1353
Query 1275 AAGACA-TCTCATTCAGC-ATATCCAAGAGTTTCTTGTCAAATGTGTTCGAGGGAGTGAA 1332
|||||| | | |||| | ||||||||||||| |||| ||||||||||||||||||| ||
Sbjct 1354 AAGACATTGT-GTTCA-CAATATCCAAGAGTTACTTGGCAAATGTGTTCGAGGGAGTCAA 1411
Query 1333 TGAGTACACTTCACAAGGATACCACGTACACTGGGCAGG-GTTCAAGTACACACATTTCA 1391
|||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||
Sbjct 1412 CAAGTACACTTCACAAGGATACCATGTACACTGGGCAGGAG-TCAAGTACACATATTTCA 1470
Query 1392 ACACTCCATGGACATTTCTATCATCTTGTGCTGCTTTGGTGCTTCTTCTCCTTACCATTT 1451
| | ||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||
Sbjct 1471 AAAGTCCGTGGACATTTCTATCATCTTGTGCTGCTTTGTTGCTTATTCTGCTTACCATTT 1530
Query 1452 TCCAAGCCTTCTTTGCAG-CTTATGCTTACTTTCGTCCTCCCAAA 1495
||||||| ||||| |||| || | || || ||||| ||||| |||
Sbjct 1531 TCCAAGCTTTCTTCGCAGGCT-ACGCGTATTTTCGCCCTCC-AAA 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5