BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22555.1

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941761 jgi|Araly1|941761|scaffold_602305.1                        422    2e-117


> Ahg941761 jgi|Araly1|941761|scaffold_602305.1
Length=326

 Score =  422 bits (228),  Expect = 2e-117
 Identities = 298/331 (90%), Gaps = 7/331 (2%)
 Strand=Plus/Plus

Query  9    AAACAAAAAAGTGATACAAGATGATTGGC-TTGGTGCTAGGAACAAtttttttCGGATCA  67
            ||| |||||||||| ||||||||||| || |||||| ||||||| |||||| ||||||||
Sbjct  1    AAAAAAAAAAGTGAAACAAGATGATT-GCTTTGGTGTTAGGAACCATTTTTGTCGGATCA  59

Query  68   A-TCCCTATATTCATTTTCAAACGACATACAAACGGTCATGAGCCAATACCGAAACATAA  126
            | |||| || ||||||| || ||||| | |||||||||||||||||||||||||||||||
Sbjct  60   ATTCCC-ATGTTCATTTACACACGACGTGCAAACGGTCATGAGCCAATACCGAAACATAA  118

Query  127  GCGAGGCGGCGGAAGCACCATCATCGCAGTATGTCTAATCCTGCTTTTGTTCCTAACGCA  186
             |||   || ||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct  119  ACGA---GGTGGAAGCAGCATCCTCGCAGTATGTCTAATCCTGCTTTTGTTCCTAACGCA  175

Query  187  AGCACTTGGAGCAAATGTATGCAATGCTGCTGATGGAACCTGTAAAGCCGGAGCAAAGTC  246
            |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct  176  AGCACTTGGAGCAAATGTATGCAACGCTGCCGAGGGAACCTGTAAAGCCGGAGCAAAGTC  235

Query  247  AGAGACATATGCAGGAGACGAGTTTGACCCCTTTCACGAAGCTGATCATTATGACGACGG  306
             ||||||||||| |||||||||||||| ||||||||||  ||||| ||||||||||| ||
Sbjct  236  CGAGACATATGCCGGAGACGAGTTTGATCCCTTTCACGTCGCTGACCATTATGACGATGG  295

Query  307  TGATGAATGATGATCGACGGGGGATATGCAT  337
            |||||| |||||||||||||| |||||||||
Sbjct  296  TGATGATTGATGATCGACGGGCGATATGCAT  326



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19039638911


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5