BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22560.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489115 jgi|Araly1|489115|fgenesh2_kg.6__2249__AT5G22560.1 2414 0.0
> Ahg489115 jgi|Araly1|489115|fgenesh2_kg.6__2249__AT5G22560.1
Length=1617
Score = 2414 bits (1307), Expect = 0.0
Identities = 1538/1645 (93%), Gaps = 34/1645 (2%)
Strand=Plus/Plus
Query 35 TTTTCTTGTCAAGAGAAAAAAGATCAAGAAAAATACAAGTACTAGATGAGAGCCATGTAT 94
||||||||| || |||||||||| |||||||||| |||| || |||| ||||||||||||
Sbjct 1 TTTTCTTGTTAAAAGAAAAAAGAACAAGAAAAAT-CAAGAACAAGATCAGAGCCATGTAT 59
Query 95 CTTCCCAAGCAA-CACACTGGAGGAAGCACAACAATTTCAGGGGAAGATGATTGCATCGT 153
|||||||||||| || || ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 60 CTTCCCAAGCAACCA-ACAGGAGGAAGCACAACAATCTCAGGGGTAGATGATTGCATCGT 118
Query 154 ACAAATC-CGAAGGGTAGATGAAGATTCCAAAATACTTCTGAGAAATTCAGCAGCTCACC 212
| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGAAATCTC-AAGGGCAGATGAAGATTCCAAAATACTTCTGAGAAATTCAGCAGCTCACC 177
Query 213 AATCTTGTTGCATCTTTAGAATCCCTCACACTCTCGTTCAATCCAATGATACAGCGTACA 272
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 178 AATCTTGTTGCATCTTTAGAATCCCTCACACTCTCGTCCAATCCAATGAGACAGCGTACA 237
Query 273 AACCGAAGATTGTCTCGATCGGTCCTTATCACCATGATCACGGTAAAGCTGATAAAGTCG 332
||||||||||||||||||||||||||||||||||| || ||||| || || ||
Sbjct 238 AACCGAAGATTGTCTCGATCGGTCCTTATCACCATCATGACGGT-AA----AT----CCG 288
Query 333 ATAAAGCCGATAAAGCGGATAAAGCACGTTTTAAGATGATCCAGCAGCACAAACAACGAT 392
|||||||| || | ||| |||||||| ||||||||||||||||||||||||| |
Sbjct 289 ATAAAGCC----AA----A-AAATCACGTTTTCAGATGATCCAGCAGCACAAACAACGGT 339
Query 393 ATCTTGATATCTTCTTGTCCAAGACTACGAAAAAGGGCGTGGGCATAGAAGACTTGCAAA 452
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 340 ATCTTGATATCTTCTTGTCCAAGACGACGAAAAAGGGCGTGGGTTTAGAAGACTTGCACA 399
Query 453 ACGTGGTCTGGAAAAAGGAACATCTCATACGAGATTCCTACTCCGAGGAACTACAACTTA 512
| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 400 AGGTGGTATGGAGAAAGGAACATCTCATACGAGATTCCTATTCCGAGGAACTACAACTTA 459
Query 513 ATCAAGTAGAGCTGATCGATCTCATGGTTCTTGATGGTTGCTTCATCCTTATGTTGTTCC 572
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 460 ATCAAGTAGAGCTGATCGATCTGATGGTTCTTGATGGTTGCTTCATCCTTATGTTGTTCC 519
Query 573 TCTTGGTTTCACGTAAGGTTCCGCATAAAGCATTTGAGGATCCCATCTTCATGTTGAGGT 632
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct 520 TCATGGTTTCACGTAAGGTTCTACATAAAACATTTGAGGATCCCATCTTCATGTTGCGGT 579
Query 633 GGATTTTACCAACTCTACGAAGTGATCTCCTCCTCCTTGAAAATCAGGTTCCGCTTTTCC 692
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 580 GGATTTTACCGACTCTACGAAGTGATCTCCTCCTCCTTGAAAACCAGGTTCCGCTTTTCC 639
Query 693 TTCTTCGAGATCTTTTTAACACAACAAAGTTAGCTACTAAAACTAGCTTAAATGAGATGA 752
||||||||||||||||| | ||| |||||||||||||||||||||||||||| |||||||
Sbjct 640 TTCTTCGAGATCTTTTTGAGACATCAAAGTTAGCTACTAAAACTAGCTTAAACGAGATGA 699
Query 753 TCTTCAACTTTTTTGGCTATTCGATAAAAAGGCCACAAAAATTTTGGGATGAAAGAATGA 812
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 700 TCTTCAACTTCTTTGGCTATTCAATAAAAAGGCCACAAAAATTTTGGGATGAAAGAATGA 759
Query 813 ATCTTGATGCAAGCCATCTTCTTGATCTCATCCGTAAGACTTTCGTA-CCAAGTCAACCT 871
||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |
Sbjct 760 ATCTTGATGCAAGCCATCTTCTTGATCTCATCCGTAAGACTTTCGTACCCGA-TCAATCG 818
Query 872 AAAAAAGCCGAAGGAGAAAGGTGGACCAATATGTTTTGCGGTTCCAGATGCTTCAATATG 931
||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 819 AAAAAAGACAAAGGAGAAAGGTGGACCAATATGTTCTGCGGTTCCAGATGCTTCAATATA 878
Query 932 TTAAGTCCTTG-GAAAAATAAAGTTCAAAGGGAGACATCaacaccaccaccaatagaaac 990
|||||| |||| |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 879 TTAAGT-CTTGTTAAAAATAAAGTTCAAACGGAGACATCAACACCACCACCGATAGAAAC 937
Query 991 aaaaacaccaccactaccaccaccaccaccaacactaacacaaccacatccaaaaccact 1050
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 AAAAACACCA-C-C-ACCACCACCACCACCAACACTAACACAACCACATCCAAAACCACC 994
Query 1051 aacaccGCCTCCTCG-CCGTTTCCTCAAGTTGGTTGTCTCAGCTAGAAAACTTCGACTCC 1109
||||||||||||||| || |||||||||||||||||||||||| |||||||||| |||||
Sbjct 995 AACACCGCCTCCTCGTCC-TTTCCTCAAGTTGGTTGTCTCAGCCAGAAAACTTCAACTCC 1053
Query 1110 GAGGAATAAAATTCCAACAAAAGAAGAAATTTGAGACACCTCTTGACATAACTCTCAAGA 1169
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1054 GAGGAATAAAATTCCAACAAAAGAAGAAATTTCAGACACCTCTTCACATAACTCTCAAGA 1113
Query 1170 ACGGTGTACTTAAAATACCGCCACTACTATTTGATGACTTTTTCAGCTCGCTTTTAATCA 1229
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1114 ACGGTGTACTAAAAATACCGCCACTACTATTTGATGACTTTTTCAGCTCTCTTTTAATCA 1173
Query 1230 ACTGCGTCGCCTTTGAGCAATTTAACGTGCAAGGCACGACCGAAATGACGAGCTATGTTA 1289
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1174 ACTGCGTCGCCTTTGAGCAATTTAATGTGCAAGGCACAACCGAAATGACGAGCTATGTTA 1233
Query 1290 CTTTCATGGGCTGCCTCATAAACACGGCAGATGATGCAACGTTCTTAAGCGAGAAAGGTA 1349
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1234 CTTTCATGGGCTGCCTCATAAATACTGCAGATGATGCAACGTTCTTAAGCGAGAAAGGTA 1293
Query 1350 TCATAGAGAACTATTTTGGAACGGGAGAACAATTATCTGTGTTCTTCAAGAATACAGGTA 1409
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1294 TCATAGAGAACTATTTTGGAACGGGAGAACAATTATCCGTGTTCTTCAAGGATACAGGTA 1353
Query 1410 AAGACATT-TCGTTCACAATATCGAAAAGTTACTTGGCAAATGTGTTCGAGGGAGTCAAC 1468
|||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1354 AAGACATTGT-GTTCACAATATCCAAGAGTTACTTGGCAAATGTGTTCGAGGGAGTCAAC 1412
Query 1469 AAGTACACTTCACAAGGATACCATGTACACTGGGCAGGAGTCAAGTACACATATTTCAAA 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 AAGTACACTTCACAAGGATACCATGTACACTGGGCAGGAGTCAAGTACACATATTTCAAA 1472
Query 1529 AGTCCGTGGACATTTCTATCATCTTTTGCTGCTTTGGTACTTATTCTGCTTACCATTTTC 1588
||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 1473 AGTCCGTGGACATTTCTATCATCTTGTGCTGCTTTGTTGCTTATTCTGCTTACCATTTTC 1532
Query 1589 CAAGCATTCTTCGCAGGCTACGCGTATTTTCGCCCTCCAAAATGATTACACCTTTGGCTC 1648
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1533 CAAGCTTTCTTCGCAGGCTACGCGTATTTTCGCCCTCCAAAGTGATTACACCTTTGGCTC 1592
Query 1649 TGGATCTCACTAATGTTGCATCTTT 1673
|||||||||| ||||||||| ||||
Sbjct 1593 TGGATCTCACCAATGTTGCACCTTT 1617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5