BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22570.1
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941764 jgi|Araly1|941764|scaffold_602308.1 1389 0.0
> Ahg941764 jgi|Araly1|941764|scaffold_602308.1
Length=926
Score = 1389 bits (752), Expect = 0.0
Identities = 871/929 (94%), Gaps = 6/929 (1%)
Strand=Plus/Plus
Query 51 cacacacacacaAGTTCACTATACTCTATGGAAATGAACTCCCCACACGAAAAGGCGGTG 110
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACACACACACAAGTTCACTCTACTCTATGGAAATGAACTCCCCACACGAAAAGGCGGTG 60
Query 111 CAAGCTATCCGTTATGGCCATAGCTGCGCCATGCGGTTGAAGAGGCGGCTCAACCATCCA 170
||||||||||| ||||||| |||||||||||||||||| |||| |||| || ||||||||
Sbjct 61 CAAGCTATCCGATATGGCCTTAGCTGCGCCATGCGGTTAAAGATGCGGATCGACCATCCA 120
Query 171 ATGGCTGATGGTGGACCGCTTTCAAGTTATGATCTTGCTAAATCGATCGTTGAAAGTTTT 230
||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||| |||
Sbjct 121 ATGGCTGATGGCGGACCGGTTTCAAGTTATGATCTTGCTAAATCCATCGCCGAAAGCTTT 180
Query 231 TCCAATGCCATTTCAATCTTATCTGCTAAACCAGA-AACCGAAGATGATCAGTTTTCTGA 289
||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 181 TCCGATGCCATTTCAATCTTATCCGCTAAACCA-ACAACCGAAGATGATCAGTTTTCTGA 239
Query 290 TTTATCTTCTAGGGATTCTTCTCCTCCTCCACAGGGGAGCCCCTCCAAGAAAAGAAAGAT 349
| ||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 240 TATATCTTCAAGGGATTCTTTTCCTTCTCCACAGGGGAGCCCCTCCAAGAAAAGAAAGAT 299
Query 350 TGATAGTACAAATTCAAGTGAGAATTGGAGGGACGATTCACCGGATCCGATTTACTACGA 409
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGATAGTACAGATTCAAGTGAGAATTGGAGGGACGATTCACCGGATCCGATTTACTACGA 359
Query 410 CGGGTATCTTTGGAGGAAATATGGTCAAAAGAGTATaaaaaaaTCTAATCACCAAAGGAG 469
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 360 TGGGTATCTTTGGAGGAAATACGGCCAAAAGAGTATAAAAAAATCTAATCACCAAAGGAG 419
Query 470 TTACTATAGATGTTCTTACAACAAAGATCATAACTGCGAAGCAAGAAAGCATGAACAAAA 529
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 CTACTATAGATGTTCTTACAACAAAGATCATAACTGCGGAGCAAGAAAGCATGAACAAAA 479
Query 530 GATCAAAGACAATCCTCCGGTTTACCGAACCACTTACTTTGGCCACCACACTTGCAAAAC 589
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATCAAAGATAATCCTCCGGTTTACCGAACCACTTACTTTGGCCACCACACTTGCAAAAC 539
Query 590 CGAACATAATCTAGATGCCATTTTTATTGCCGGACAAGATCCCCTAGATGACTTTAAAAG 649
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 540 CGAACATAATCTAGATGCCATTTTTATTGCCGGACAAGATCCCGTAGATGACTTGAAAAG 599
Query 650 TACCCAAATGATCCGATTCGGAAAAGATC-AGGATCAGGAGAAGGAAAGCCGCTCGAACG 708
| ||||||||||||| ||||||||||||| | |||||||| ||| |||| |||||| |
Sbjct 600 TGCCCAAATGATCCGCTTCGGAAAAGATCTAA-ATCAGGAGGAGGGAAGCTACTCGAAAG 658
Query 709 GTTTCTCCTTATCGGTTAAGCA-TGAAGAAGATATCATCAAAGAGCAAGCTATAGATCAG 767
|||||||||||||||||||| | |||||||||||||| || ||||||| | || ||||||
Sbjct 659 GTTTCTCCTTATCGGTTAAG-AGTGAAGAAGATATCACCAGAGAGCAAACCATGGATCAG 717
Query 768 TACCGTGAGATAACCAGTAATGACCAAGATTGTCAAGATGTTATAGAAGAATATCTATCA 827
||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 718 TACCGTGAGATAACCAGTAATGACCAAGATTGTCAAGATGTGATTGAAGAAGATCTATCA 777
Query 828 TCACCATCAGGCTCTTATCCTCCTTCATCGTCATCTGGCAGTGAAAGTGCTGACTTTAAT 887
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCACCATCAGGCTTTTATCTTCCTTCATCGTCATCTGGCAGTGAAAGTGCTGACTTTAAT 837
Query 888 TCTGATTTGTTATTTGACAACCCAGACTCGTGGGATCGTTATGATCAGTTTTACTTTTGA 947
|||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 838 TCTGATTTGTTAGTTGACAACCTAGACTCGTGGGATTGTTATGATCAGTTTTACTTTGGA 897
Query 948 TTGCACTAGATTTTTCAGCTAAAACTATT 976
||||||||||||||| |||||| ||||||
Sbjct 898 TTGCACTAGATTTTTTAGCTAAGACTATT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37779810747
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5