BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22570.1 Length=1016 Score E Sequences producing significant alignments: (Bits) Value Ahg941764 jgi|Araly1|941764|scaffold_602308.1 1389 0.0 > Ahg941764 jgi|Araly1|941764|scaffold_602308.1 Length=926 Score = 1389 bits (752), Expect = 0.0 Identities = 871/929 (94%), Gaps = 6/929 (1%) Strand=Plus/Plus Query 51 cacacacacacaAGTTCACTATACTCTATGGAAATGAACTCCCCACACGAAAAGGCGGTG 110 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACACACACACAAGTTCACTCTACTCTATGGAAATGAACTCCCCACACGAAAAGGCGGTG 60 Query 111 CAAGCTATCCGTTATGGCCATAGCTGCGCCATGCGGTTGAAGAGGCGGCTCAACCATCCA 170 ||||||||||| ||||||| |||||||||||||||||| |||| |||| || |||||||| Sbjct 61 CAAGCTATCCGATATGGCCTTAGCTGCGCCATGCGGTTAAAGATGCGGATCGACCATCCA 120 Query 171 ATGGCTGATGGTGGACCGCTTTCAAGTTATGATCTTGCTAAATCGATCGTTGAAAGTTTT 230 ||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||| ||| Sbjct 121 ATGGCTGATGGCGGACCGGTTTCAAGTTATGATCTTGCTAAATCCATCGCCGAAAGCTTT 180 Query 231 TCCAATGCCATTTCAATCTTATCTGCTAAACCAGA-AACCGAAGATGATCAGTTTTCTGA 289 ||| ||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| Sbjct 181 TCCGATGCCATTTCAATCTTATCCGCTAAACCA-ACAACCGAAGATGATCAGTTTTCTGA 239 Query 290 TTTATCTTCTAGGGATTCTTCTCCTCCTCCACAGGGGAGCCCCTCCAAGAAAAGAAAGAT 349 | ||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 240 TATATCTTCAAGGGATTCTTTTCCTTCTCCACAGGGGAGCCCCTCCAAGAAAAGAAAGAT 299 Query 350 TGATAGTACAAATTCAAGTGAGAATTGGAGGGACGATTCACCGGATCCGATTTACTACGA 409 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 TGATAGTACAGATTCAAGTGAGAATTGGAGGGACGATTCACCGGATCCGATTTACTACGA 359 Query 410 CGGGTATCTTTGGAGGAAATATGGTCAAAAGAGTATaaaaaaaTCTAATCACCAAAGGAG 469 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 360 TGGGTATCTTTGGAGGAAATACGGCCAAAAGAGTATAAAAAAATCTAATCACCAAAGGAG 419 Query 470 TTACTATAGATGTTCTTACAACAAAGATCATAACTGCGAAGCAAGAAAGCATGAACAAAA 529 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 CTACTATAGATGTTCTTACAACAAAGATCATAACTGCGGAGCAAGAAAGCATGAACAAAA 479 Query 530 GATCAAAGACAATCCTCCGGTTTACCGAACCACTTACTTTGGCCACCACACTTGCAAAAC 589 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GATCAAAGATAATCCTCCGGTTTACCGAACCACTTACTTTGGCCACCACACTTGCAAAAC 539 Query 590 CGAACATAATCTAGATGCCATTTTTATTGCCGGACAAGATCCCCTAGATGACTTTAAAAG 649 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 540 CGAACATAATCTAGATGCCATTTTTATTGCCGGACAAGATCCCGTAGATGACTTGAAAAG 599 Query 650 TACCCAAATGATCCGATTCGGAAAAGATC-AGGATCAGGAGAAGGAAAGCCGCTCGAACG 708 | ||||||||||||| ||||||||||||| | |||||||| ||| |||| |||||| | Sbjct 600 TGCCCAAATGATCCGCTTCGGAAAAGATCTAA-ATCAGGAGGAGGGAAGCTACTCGAAAG 658 Query 709 GTTTCTCCTTATCGGTTAAGCA-TGAAGAAGATATCATCAAAGAGCAAGCTATAGATCAG 767 |||||||||||||||||||| | |||||||||||||| || ||||||| | || |||||| Sbjct 659 GTTTCTCCTTATCGGTTAAG-AGTGAAGAAGATATCACCAGAGAGCAAACCATGGATCAG 717 Query 768 TACCGTGAGATAACCAGTAATGACCAAGATTGTCAAGATGTTATAGAAGAATATCTATCA 827 ||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| Sbjct 718 TACCGTGAGATAACCAGTAATGACCAAGATTGTCAAGATGTGATTGAAGAAGATCTATCA 777 Query 828 TCACCATCAGGCTCTTATCCTCCTTCATCGTCATCTGGCAGTGAAAGTGCTGACTTTAAT 887 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 778 TCACCATCAGGCTTTTATCTTCCTTCATCGTCATCTGGCAGTGAAAGTGCTGACTTTAAT 837 Query 888 TCTGATTTGTTATTTGACAACCCAGACTCGTGGGATCGTTATGATCAGTTTTACTTTTGA 947 |||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| || Sbjct 838 TCTGATTTGTTAGTTGACAACCTAGACTCGTGGGATTGTTATGATCAGTTTTACTTTGGA 897 Query 948 TTGCACTAGATTTTTCAGCTAAAACTATT 976 ||||||||||||||| |||||| |||||| Sbjct 898 TTGCACTAGATTTTTTAGCTAAGACTATT 926 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37779810747 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5