BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22580.1

Length=683
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941765 jgi|Araly1|941765|scaffold_602309.1                        580    3e-165


> Ahg941765 jgi|Araly1|941765|scaffold_602309.1
Length=378

 Score =  580 bits (314),  Expect = 3e-165
 Identities = 346/362 (96%), Gaps = 0/362 (0%)
 Strand=Plus/Plus

Query  18   GCTAAAGTAATAAAATTAATGGCAACTTCAGGGTTTAAGCATTTGGTGGTTGTGAAGTTT  77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3    GCTAAAGTAATAAAATTAATGGCAACTTCAGGGTTTAAGCATTTGGTGGTTGTGAAGTTT  62

Query  78   AAGGAAGATACAAAGGTTGATGAGATCTTGAAGGGCTTGGAGAATCTTGTTTCTCAGATT  137
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   AAGGAAGATACTAAGGTTGATGAGATCTTGAAGGGCTTGGAGAATCTTGTTTCTCAGATT  122

Query  138  GATACTGTCAAATCCTTTGAATGGGGAGAAGATAAAGAGAGTCACGATATGCTTAGACAA  197
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  123  GATACTGTCAAATCCTTTGAATGGGGAGAAGATAAAGAGAGTCATGAGATGCTTAGACAA  182

Query  198  GGATTCACTCATGCATTTTCGATGACCTTTGAGAACAAAGATGGTTACGTCGCCTTCACA  257
            ||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  183  GGATTTACTCACGCATTTTCGATGACCTTTGAGAACAAAGATGGTTACGTTGCCTTTACA  242

Query  258  AGCCATCCTCTTCATGTTGAATTCTCAGCCGCTTTCACCGCCGTCATCGACAAGATCGTT  317
            |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  243  AGCCATCCCCTTCACGTTGAATTCTCTGCCGCTTTCACCGCCGTCATCGACAAGATTGTT  302

Query  318  CTCCTCGATTTCCCCGTCGCCGCTGTCAAATCTTCCGTTGTTGCAACACCATGAATCTTG  377
            ||||| |||||||| |||||||| ||||||||||||||||||| |||||| |||||||||
Sbjct  303  CTCCTGGATTTCCCGGTCGCCGCCGTCAAATCTTCCGTTGTTGTAACACCGTGAATCTTG  362

Query  378  TG  379
            ||
Sbjct  363  TG  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25084879386


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5