BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22600.1
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941766 jgi|Araly1|941766|scaffold_602310.1 797 0.0
Ahg489119 jgi|Araly1|489119|fgenesh2_kg.6__2253__AT5G22610.1 597 8e-170
> Ahg941766 jgi|Araly1|941766|scaffold_602310.1
Length=670
Score = 797 bits (431), Expect = 0.0
Identities = 478/501 (95%), Gaps = 2/501 (0%)
Strand=Plus/Plus
Query 456 TAAGACTCTATCGGGTA-TCGATGGGTAACTTTGAGTCTGTTTCTTTACCTCATCTTAAG 514
||||||||||||||| | | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TAAGACTCTATCGGG-AGTTGATGGGTAACTTTGAGTCTGTTTCTTTACCTCGTCTTAAG 59
Query 515 ACTTTGTGTTTAGAACGAAATATATATCCTAATGAGGCGAGTGTGGAGTCGCTTATCTCG 574
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 ACTTTGTGTTTAGAACGAAATATATATCCTAATGAGGCAAGTGTGGAGTCGCTTATCTCG 119
Query 575 TCTTGCCCCGTTCTTGAAGATTTGACCATTCTTAGGATAAATGATAATGTAAAGGTTTTA 634
||||||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 120 TCTTGCCCCGTCCTCGAAGATTTGACCATTGTTAGGATGAATGATAATGTAAAGGTTTTA 179
Query 635 CGAGTGCATTCTCAATCACTAACCAGTTTTAGTGTAGGATATCATCCTGGTGACTTAATT 694
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 CGAGTGTATTCTCAATCATTAACCAGTTTTAGTGTAGGATATAATCCTGGTGACTTAATT 239
Query 695 CGTAAGTACAATTATTATTCTGAAAAGGTTAGAGAGAACTCGGGGCTTGTGATTGATGCG 754
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGTAAGTACAATTATTATTCTGAAAAGGTTAGAGAGAACTCGGGGCTTGTGATTGATGCA 299
Query 755 CCTAGACTCAAGTATTTGACTTTCAACTACGAAAGATCGAAAAGTAAAATCATGAGAAAT 814
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 300 CCTAGACTCAAGTATTTGACTTTCAACTACGAAAGATCGAAAAGTAAAATCGTAAGAAAT 359
Query 815 TTGAGTTCCTTAGTTAAGGTTAACGTTCTTAGCTCCTTTGATATTTCAAGTGTAGCTGGC 874
|||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||
Sbjct 360 TTGAGTTCTTTAGTTAAGGTCAACGTTCTTAGCGCCTTTGATATTTCAAGTGTAGTTGGC 419
Query 875 TGTTCAGAGCAACAAATGGCCCATAATTTTTTCACCGGTATCTCGAGAGTTAGGGATCTG 934
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TGTTCAGAGCAACAAATGGCCCATAATTTTTTCACCGGTATCTCGAGAGTTAGGGAAATG 479
Query 935 ATCATCTCTCGGGATATGATG 955
|||||||||| | ||||||||
Sbjct 480 ATCATCTCTCAGAATATGATG 500
> Ahg489119 jgi|Araly1|489119|fgenesh2_kg.6__2253__AT5G22610.1
Length=1395
Score = 597 bits (323), Expect = 8e-170
Identities = 513/601 (85%), Gaps = 28/601 (5%)
Strand=Plus/Plus
Query 42 TGCCAGAGAAGATCTGATAAGCAAATTACCCAACGCTTTGATATCTCACAT-CTCTCGTA 100
||| ||||| ||||||||||||||||||||| | | ||| |||||||| || ||||||||
Sbjct 57 TGCAAGAGAGGATCTGATAAGCAAATTACCCGAGGTTTTAATATCTCAGATACTCTCGTA 116
Query 101 TCTTCGGACAAAGGATGTTGTCAGGACTAGTGTTTTATCCAAGAGGTGGAAAAGTGTCTG 160
||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 117 TCTTCCGACAAAGGATATTGTCAGGACTAGTGTTTTGTCCAAGAGGTGGAAAAGTATCTG 176
Query 161 GCGTTTGGTTCCCGGGTTGGATTTGGACTCTTATGAGTTCCTAGAATACTATACCTTTGT 220
|| |||| |||| |||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 177 GCTTTTGATTCCGGGGTTGGATTTGGACTCTTATGAGTTCCCAGATTACAATACCTTTGT 236
Query 221 GCG-TTTTGCGAACAAGATCCTAGATTTT--TGTAGGGAA-CAAAGTCATTCTTGAACAA 276
| | |||| |||| | |||| ||||| | ||||||| | ||||||| |||||||||
Sbjct 237 G-GATTTTATGAACGACTTCCT--ATTTTCCTCTAGGGAACCGAAGTCATGCTTGAACAA 293
Query 277 GCTCAAGCT-AGTTATTCAGAAGGATAAGACTGGTCAGTCTTGTGTCACGCCT-TGGATA 334
||||||||| || ||||||||||||| |||||| || ||||||||||||| || |||| |
Sbjct 294 GCTCAAGCTAAG-TATTCAGAAGGATGAGACTGATCCGTCTTGTGTCACG-CTATGGACA 351
Query 335 GACTATGTCGCTAGGGGTAACCTTCA-GCACCTTGATGTTGAGTTAGGTGGTTGTGTATA 393
|||| ||| ||||||||||| ||| | ||| |||||||||||||| |||||| || | ||
Sbjct 352 GACTTTGTGGCTAGGGGTAAACTT-ACGCATCTTGATGTTGAGTTTGGTGGTCGT-T-TA 408
Query 394 -T-TTTCGTGAATATTGGGAGGTGATGCCCGTAAGCCTTTATATCTGTGAGACGCTCCTT 451
| | |||| |||||||| |||||||| ||||||| |||| |||| |||||||||||
Sbjct 409 CTGATGCGTGTGTATTGGGAACTGATGCCCCTAAGCCTCTATACCTGTAAGACGCTCCTT 468
Query 452 CACTTAAGACTCTATCGGGTATCGATGGGTAACTTTGAGT-CT---G-T--TTCTTTACC 504
||||||||||| |||||||||| | || |||| ||||| | || | | |||||||||
Sbjct 469 CACTTAAGACTGTATCGGGTATTGTTGCGTAAGTTTGA-TCCTCGCGTTGATTCTTTACC 527
Query 505 TCATCTTAAGACTTTGTGTTTAGAACG-AAATATATATCCTAATGAGGCGAGTGTGGAGT 563
|| ||| || ||||||||||||||| | |||| |||||||||||||||||||| ||||||
Sbjct 528 TCGTCTCAAAACTTTGTGTTTAGAA-GAAAATGTATATCCTAATGAGGCGAGTCTGGAGT 586
Query 564 CGCTTATCTCGTCTTGCCCCGTTCTTGAAGATTTGACCATTCTTAGGATAAATGATAATG 623
||||||||||||||||||||||||| ||||||||||||||| ||||| | |||||||||
Sbjct 587 CGCTTATCTCGTCTTGCCCCGTTCTCGAAGATTTGACCATTGTTAGGGCAGATGATAATG 646
Query 624 T 624
|
Sbjct 647 T 647
Score = 558 bits (302), Expect = 4e-158
Identities = 580/708 (82%), Gaps = 43/708 (6%)
Strand=Plus/Plus
Query 715 TGAAAAGGTTA-GAGAGAACTCGGGGCTTGTGATTGATGCGCCTAGACTCAAGTATTTGA 773
||| || |||| || | ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 639 TGATAATGTTAGGA-ACAACTCGGGGCTTGTGGTTGATGCCCCTAGACTCAAGTATTTGA 697
Query 774 CTTTCAACTACGAAAGATCGAAAAGTAAAATCATGAGAAATTTGAGTTCCTTAGTTAAGG 833
|||||||| | |||| ||| |||||||||| ||| || |||||| |||||||||||||||
Sbjct 698 CTTTCAACAATGAAAAATCCAAAAGTAAAACCATAAGCAATTTGGGTTCCTTAGTTAAGG 757
Query 834 TTAACGTTCTTA-GCTCCTTTGATATTTCAAGTGTAGCTGGCTGTTCAG-AGCAACAAAT 891
| || ||| || || ||||| ||||||||||||||| ||||||||| | || |||||||
Sbjct 758 TCAATATTC-TAGGCCCCTTTAATATTTCAAGTGTAGTTGGCTGTTC-GAAGGAACAAAT 815
Query 892 GGCCCATAATTTTTTCACCGGTATCTCGAGAGTTAGGGATCTGATCATCTCTCG-GGATA 950
||||||||| ||| || | |||||||||| ||||||| |||| ||| ||||| | |||||
Sbjct 816 GGCCCATAACTTTCTCGCGGGTATCTCGACAGTTAGGTATCTCATCGTCTCT-GAGGATA 874
Query 951 TGAT-GAGGTTAATCTTTTACTACTTGAAAG-GAAACTCACTGCCACAGTTTTGCAACTT 1008
|||| || |||||||| || ||||||||||| | | ||| |||||||||||||||||||
Sbjct 875 TGATGGA-GTTAATCTATTCCTACTTGAAAGTG-GATTCATTGCCACAGTTTTGCAACTT 932
Query 1009 GTCTTATTTGAAAACAAACTTATCT-G-AAACATCC-TTGGCATTCCTGGACATCTTTAC 1065
||| | ||||||| | || | | | | | ||||| ||| | |||||||||||| | |
Sbjct 933 GTCCTGTTTGAAAGC-AA-GTGTTTGGTTATCATCCTTTGAC-TTCCTGGACATCCTGCC 989
Query 1066 AAAGCTTCTTGAAAGCTGTCCGAATCTAAAATCCATCGCCTTGGGTTTAACTTGTTTCCT 1125
||||||||||||||||||||||||||| |||| |||| ||||| | ||||||| | |
Sbjct 990 AAAGCTTCTTGAAAGCTGTCCGAATCTCAAATTTATCGTCTTGGATACAACTTGTATAGT 1049
Query 1126 T----GA-CGA---CA-TGGTTGAAATGAGTGTCTGGTCC-GTGCCTAAATGTTTGCTGT 1175
| || ||| || |||| |||| ||| |||| | || |||||||| |||||| |||
Sbjct 1050 TAATCGAACGAAAGCAATGGTAGAAAGGAGAGTCTCG-CCTGTGCCTAAGTGTTTGTTGT 1108
Query 1176 CATCGCTCGAATTTGTAGAGATAAAAAAC-GAACACCCACCT-GATGATGGTGTACTGAA 1233
||||||| || |||||||||||||||||| ||| | | | | |||||||||| | || |
Sbjct 1109 CATCGCTGGAGTTTGTAGAGATAAAAAACAGAAT-CTC-CGTAGATGATGGTGCATTGGA 1166
Query 1234 AGTTGCAAGGTACTTTGTAGAGAACTCTGTAAATCTCAAGAAACTTGCTCTACATTTG-C 1292
||||||||||||||||||||||||||| | |||||||||||||||| ||| |||| |
Sbjct 1167 GGTTGCAAGGTACTTTGTAGAGAACTCTATGAATCTCAAGAAACTTGTTCTGGGTTTGGC 1226
Query 1293 AT-TT--TTTCTTT--CTA-GA--AGGAAATCCAGCTGTCTTAAACGATCTCCTTGCATT 1344
|| || ||||| ||| || || ||||| ||||||||||| ||||||||||||||
Sbjct 1227 ATCTTCCTTTCTAAGACTAAGACTAGCAAATCGGGCTGTCTTAAAGGATCTCCTTGCATT 1286
Query 1345 GCCGAGACGATCTAGCATGTGTCAGATCGAAGTTTTTAATGTGC-AAA 1391
|||||| ||||||||||||||||| |||||||||||||||| || |||
Sbjct 1287 GCCGAGGCGATCTAGCATGTGTCAAATCGAAGTTTTTAATGCGCTAAA 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5