BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22610.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489119 jgi|Araly1|489119|fgenesh2_kg.6__2253__AT5G22610.1 1760 0.0
Ahg948115 jgi|Araly1|948115|scaffold_800002.1 150 2e-35
> Ahg489119 jgi|Araly1|489119|fgenesh2_kg.6__2253__AT5G22610.1
Length=1395
Score = 1760 bits (953), Expect = 0.0
Identities = 1226/1355 (90%), Gaps = 30/1355 (2%)
Strand=Plus/Plus
Query 42 TGCAATAGAGGATCTGATAAGCAAATTACCGGAGGTTTTGCTATCTCAGATACTCTCGTA 101
||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 57 TGCAAGAGAGGATCTGATAAGCAAATTACCCGAGGTTTTAATATCTCAGATACTCTCGTA 116
Query 102 TCTTCCGACAAAGGATATTGTCAGGACAAGTGTTTTGTCCAAGAGGTGGAAAAGTGTCTG 161
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 117 TCTTCCGACAAAGGATATTGTCAGGACTAGTGTTTTGTCCAAGAGGTGGAAAAGTATCTG 176
Query 162 GCTTTTGATTCCCGGGTTGGATTTGGACTC-TAGTGAGTTCCCACATTACGATACCTTTG 220
|||||||||||| ||||||||||||||||| || |||||||||| ||||| |||||||||
Sbjct 177 GCTTTTGATTCCGGGGTTGGATTTGGACTCTTA-TGAGTTCCCAGATTACAATACCTTTG 235
Query 221 TGGATTTTATGAACGAATTCCTATTTTTCTCTAGGGAAGAGAA-TCCATGCTTGCACAAG 279
|||||||||||||||| |||||||||| |||||||||| ||| | |||||||| |||||
Sbjct 236 TGGATTTTATGAACGACTTCCTATTTTCCTCTAGGGAACCGAAGT-CATGCTTGAACAAG 294
Query 280 CTCAAGCTAAGTATTCAGAAGAATGAGAATGATCCGTCTTGTGTCACGCTATGGACAGAC 339
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 295 CTCAAGCTAAGTATTCAGAAGGATGAGACTGATCCGTCTTGTGTCACGCTATGGACAGAC 354
Query 340 TGTGTGGCTAGGGGTAAACTTCA-GCATCTTGATGTTGAGTTTGGTGGTCGCGTAATGGA 398
| ||||||||||||||||||| | ||||||||||||||||||||||||||| || | ||
Sbjct 355 TTTGTGGCTAGGGGTAAACTT-ACGCATCTTGATGTTGAGTTTGGTGGTCGTTTACT-GA 412
Query 399 -GCGTGAGTTTTGGGAAATGATGCCCCTAAGCCTCTATATCTGTAAGACGCTCCTTCACT 457
||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 413 TGCGTGTGTATTGGGAACTGATGCCCCTAAGCCTCTATACCTGTAAGACGCTCCTTCACT 472
Query 458 TGAGACTCTATCGGGTATTGTTGGGTAACTTTGATCAGTC-TGTTGATTCTTTACCTAGT 516
| ||||| ||||||||||||||| |||| ||||||| || ||||||||||||||| ||
Sbjct 473 TAAGACTGTATCGGGTATTGTTGCGTAAGTTTGATC-CTCGCGTTGATTCTTTACCTCGT 531
Query 517 CTCAAGAGC-ATGTGTTTAGAAGAAAATGTATATTCTAATGAGGCGAGTCTGGAGTCGCT 575
||||| | | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 532 CTCAA-AACTTTGTGTTTAGAAGAAAATGTATATCCTAATGAGGCGAGTCTGGAGTCGCT 590
Query 576 TATCTCGTCTTGCCGCGTTCTCGAAGATTTGACCATTGTTAAGATAGATGATAACGTAAG 635
|||||||||||||| |||||||||||||||||||||||||| | ||||||||| || ||
Sbjct 591 TATCTCGTCTTGCCCCGTTCTCGAAGATTTGACCATTGTTAGGGCAGATGATAATGTTAG 650
Query 636 AGATAGAGGGAACTCGGGACTTGTGATTGATGCCCCTAGACTCAAGTATTTGACTTTCAA 695
| | | |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 651 -G--A-A--CAACTCGGGGCTTGTGGTTGATGCCCCTAGACTCAAGTATTTGACTTTCAA 704
Query 696 CAATGACCAATCGAAAAGTAAAACCATAAGCAATTTAGGTTCCTTAGTTAAGGTCACTAT 755
|||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 705 CAATGAAAAATCCAAAAGTAAAACCATAAGCAATTTGGGTTCCTTAGTTAAGGTCAATAT 764
Query 756 TCTTGGCCCCATAAAGATTTCAAGGGTAGTGGGCTGTACGGAGCAACAAATGGCCCATAA 815
||| |||||| | || |||||||| ||||| |||||| || || ||||||||||||||||
Sbjct 765 TCTAGGCCCCTTTAATATTTCAAGTGTAGTTGGCTGTTCGAAGGAACAAATGGCCCATAA 824
Query 816 GTTTCTCACGGGCATCTCAAGAGTTAGGTATCTCATCGTCTCTGAAGATATGATGGAGGT 875
|||||| |||| ||||| | |||||||||||||||||||||||| |||||||||||| |
Sbjct 825 CTTTCTCGCGGGTATCTCGACAGTTAGGTATCTCATCGTCTCTGAGGATATGATGGAGTT 884
Query 876 CATC-AGTTCCTACTTGAAAGAAGATTCATTGCCACAGTTTGGCAACTTGTCCTATTTGA 934
||| | |||||||||||||| |||||||||||||||||| |||||||||||| |||||
Sbjct 885 AATCTA-TTCCTACTTGAAAGTGGATTCATTGCCACAGTTTTGCAACTTGTCCTGTTTGA 943
Query 935 AAGCAAGTGTTTGGTTATCATCCTTTGACTTCCTGGACATCCTGCCAAAGCTTCTTGAAA 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 AAGCAAGTGTTTGGTTATCATCCTTTGACTTCCTGGACATCCTGCCAAAGCTTCTTGAAA 1003
Query 995 GCTGTCCGAATCTAAAATCCATCGTCTTGGAAACAACTTGTATAGTTGATCGTACGAAAG 1054
||||||||||||| |||| ||||||||||| ||||||||||||||| |||| |||||||
Sbjct 1004 GCTGTCCGAATCTCAAATTTATCGTCTTGGATACAACTTGTATAGTTAATCGAACGAAAG 1063
Query 1055 CTACGGTAGAAAGGAGAGTCTCGTCTGTGCCTGAGTGTTTGTTGTCATCGCTGGAGTTTG 1114
| | ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1064 CAATGGTAGAAAGGAGAGTCTCGCCTGTGCCTAAGTGTTTGTTGTCATCGCTGGAGTTTG 1123
Query 1115 TAGAGATAAAAAACAGAATCTCGGTAGATGATGGTGCATTGGAAGTTGCAAGGTACTTTG 1174
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1124 TAGAGATAAAAAACAGAATCTCCGTAGATGATGGTGCATTGGAGGTTGCAAGGTACTTTG 1183
Query 1175 TAGAGAACTCTGTGAATCTACA-GAAAGTTGTTCTGCGTTTGGCATCTTCCTTTCTAAGA 1233
||||||||||| ||||||| || |||| |||||||| |||||||||||||||||||||||
Sbjct 1184 TAGAGAACTCTATGAATCT-CAAGAAACTTGTTCTGGGTTTGGCATCTTCCTTTCTAAGA 1242
Query 1234 CGA-G----G-AAATCAAGCTGTCTTGAAGGATATCCTTGAATTGCCGAGGCGATCTAGC 1287
| | | | ||||| |||||||| |||||| |||||| |||||||||||||||||||
Sbjct 1243 CTAAGACTAGCAAATCGGGCTGTCTTAAAGGATCTCCTTGCATTGCCGAGGCGATCTAGC 1302
Query 1288 ATGTGTCAGATCGAAGTCTTTAATGCGCTAAACGGCCATGCTCTTTGTTTTCGCAAAAAC 1347
|||||||| |||||||| ||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1303 ATGTGTCAAATCGAAGTTTTTAATGCGCTAAACGGCCGTGCTCTTTGTTATCGAAAAAAC 1362
Query 1348 AAAATAACCGGCCGTGTTTTCTTAGACTATTTTGA 1382
|||| ||||||||||||| | ||| ||||||||
Sbjct 1363 AAAAAAACCGGCCGTGTTGG-T-AGAATATTTTGA 1395
> Ahg948115 jgi|Araly1|948115|scaffold_800002.1
Length=988
Score = 150 bits (81), Expect = 2e-35
Identities = 300/398 (75%), Gaps = 45/398 (11%)
Strand=Plus/Plus
Query 267 ATGCTTGCACAAGCTCAAGCTAAGTATTCA---G-A--AGAATGAGAATGAT--CC-GTC 317
|||||||||||||||||||||||||||||| | | ||||||||||| | || ||
Sbjct 86 ATGCTTGCACAAGCTCAAGCTAAGTATTCACCAGGATGAGAATGAGAATCACAACCAGTT 145
Query 318 TTGTGTCACGC-TATGGACAGACTGT-GTGGCTAGGGGTAAACTTCAGCATCTTGATGTT 375
||||||||||| | |||| ||| | | ||||||| ||| |||||| ||||||||||||||
Sbjct 146 TTGTGTCACGCGT-TGGATAGATT-TCGTGGCTAAGGGAAAACTTAAGCATCTTGATGTT 203
Query 376 GAGTTTGGTGGTCGCGTAATGGAGCGTGAGT-TTTGGGAAATGAT---GCCCCTAAGCCT 431
||| | | || | || | ||| ||| ||||| || |||| |||| |||||||
Sbjct 204 GAGC--GCTT-TCT-G-AA-G---CGTAAGTGTTTGG-AAGTGATCATGCCCGTAAGCCT 253
Query 432 CTATATCTGTAAGACGCTCCTTCACTTGAGACTCTA-TCGGGTATTGTTGGGTA--ACTT 488
|| | ||||| ||||| | || |||| |||||| | ||| || ||||| ||| | ||
Sbjct 254 CTTTGTCTGTCAGACGTTAGTTTACTTAAGACTC-AGTCGCGTGTTGTTTAGTACTAGTT 312
Query 489 T-GATCAGTC-T-GT-TG-ATTCTTTACCTAGTCTCAAGAG-CATGTGTTTAGAAGAAAA 542
| || | || | || || || | |||||| |||| |||| | || || ||||| ||
Sbjct 313 TTGAGGAATCGTCGTCTGTAT-CATTACCTCGTCTTAAGACTC-TGCGTCTAGAACTCAA 370
Query 543 TGTATATTCTAATGAGGCGAGTCTGGAGTCGCTTATCTCGTCT-TGCCGCGTTCTCGAAG 601
|||||||| |||||| | ||||| |||||||| ||||| | | | || ||| || ||||
Sbjct 371 CGTATATTCAAATGAGACAAGTCTAGAGTCGCTAATCTCATATATCCC-CGTGCTTGAAG 429
Query 602 ATTTGACCATTGTTA-A-GA-TAGATGATAACGT-AAG 635
||||||||||||||| | || ||| |||||| || |||
Sbjct 430 ATTTGACCATTGTTAGAAGAGTAGGTGATAATGTTAAG 467
Score = 82.4 bits (44), Expect = 8e-15
Identities = 87/107 (81%), Gaps = 6/107 (6%)
Strand=Plus/Plus
Query 659 TGATTGATGCCCCTAGACTCAAGTATTTGACTTTC-AACAATGACC-AATCGAAA-AGTA 715
|||||||||||||||||||||||||||||| | || || | ||| || | || | ||
Sbjct 592 TGATTGATGCCCCTAGACTCAAGTATTTGAATATCGAAGA-TGAAAGAA-C-AACTATTA 648
Query 716 AAACCATAAGCAATTTAGGTTCCTTAGTTAAGGTCACTATTCTTGGC 762
||||||||| |||||| ||||||||| ||||||| | ||||||||
Sbjct 649 AAACCATAACCAATTTGGGTTCCTTAAACAAGGTCAATCTTCTTGGC 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5