BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22610.1 Length=1419 Score E Sequences producing significant alignments: (Bits) Value Ahg489119 jgi|Araly1|489119|fgenesh2_kg.6__2253__AT5G22610.1 1760 0.0 Ahg948115 jgi|Araly1|948115|scaffold_800002.1 150 2e-35 > Ahg489119 jgi|Araly1|489119|fgenesh2_kg.6__2253__AT5G22610.1 Length=1395 Score = 1760 bits (953), Expect = 0.0 Identities = 1226/1355 (90%), Gaps = 30/1355 (2%) Strand=Plus/Plus Query 42 TGCAATAGAGGATCTGATAAGCAAATTACCGGAGGTTTTGCTATCTCAGATACTCTCGTA 101 ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 57 TGCAAGAGAGGATCTGATAAGCAAATTACCCGAGGTTTTAATATCTCAGATACTCTCGTA 116 Query 102 TCTTCCGACAAAGGATATTGTCAGGACAAGTGTTTTGTCCAAGAGGTGGAAAAGTGTCTG 161 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 117 TCTTCCGACAAAGGATATTGTCAGGACTAGTGTTTTGTCCAAGAGGTGGAAAAGTATCTG 176 Query 162 GCTTTTGATTCCCGGGTTGGATTTGGACTC-TAGTGAGTTCCCACATTACGATACCTTTG 220 |||||||||||| ||||||||||||||||| || |||||||||| ||||| ||||||||| Sbjct 177 GCTTTTGATTCCGGGGTTGGATTTGGACTCTTA-TGAGTTCCCAGATTACAATACCTTTG 235 Query 221 TGGATTTTATGAACGAATTCCTATTTTTCTCTAGGGAAGAGAA-TCCATGCTTGCACAAG 279 |||||||||||||||| |||||||||| |||||||||| ||| | |||||||| ||||| Sbjct 236 TGGATTTTATGAACGACTTCCTATTTTCCTCTAGGGAACCGAAGT-CATGCTTGAACAAG 294 Query 280 CTCAAGCTAAGTATTCAGAAGAATGAGAATGATCCGTCTTGTGTCACGCTATGGACAGAC 339 ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 295 CTCAAGCTAAGTATTCAGAAGGATGAGACTGATCCGTCTTGTGTCACGCTATGGACAGAC 354 Query 340 TGTGTGGCTAGGGGTAAACTTCA-GCATCTTGATGTTGAGTTTGGTGGTCGCGTAATGGA 398 | ||||||||||||||||||| | ||||||||||||||||||||||||||| || | || Sbjct 355 TTTGTGGCTAGGGGTAAACTT-ACGCATCTTGATGTTGAGTTTGGTGGTCGTTTACT-GA 412 Query 399 -GCGTGAGTTTTGGGAAATGATGCCCCTAAGCCTCTATATCTGTAAGACGCTCCTTCACT 457 ||||| || ||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 413 TGCGTGTGTATTGGGAACTGATGCCCCTAAGCCTCTATACCTGTAAGACGCTCCTTCACT 472 Query 458 TGAGACTCTATCGGGTATTGTTGGGTAACTTTGATCAGTC-TGTTGATTCTTTACCTAGT 516 | ||||| ||||||||||||||| |||| ||||||| || ||||||||||||||| || Sbjct 473 TAAGACTGTATCGGGTATTGTTGCGTAAGTTTGATC-CTCGCGTTGATTCTTTACCTCGT 531 Query 517 CTCAAGAGC-ATGTGTTTAGAAGAAAATGTATATTCTAATGAGGCGAGTCTGGAGTCGCT 575 ||||| | | ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 532 CTCAA-AACTTTGTGTTTAGAAGAAAATGTATATCCTAATGAGGCGAGTCTGGAGTCGCT 590 Query 576 TATCTCGTCTTGCCGCGTTCTCGAAGATTTGACCATTGTTAAGATAGATGATAACGTAAG 635 |||||||||||||| |||||||||||||||||||||||||| | ||||||||| || || Sbjct 591 TATCTCGTCTTGCCCCGTTCTCGAAGATTTGACCATTGTTAGGGCAGATGATAATGTTAG 650 Query 636 AGATAGAGGGAACTCGGGACTTGTGATTGATGCCCCTAGACTCAAGTATTTGACTTTCAA 695 | | | |||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 651 -G--A-A--CAACTCGGGGCTTGTGGTTGATGCCCCTAGACTCAAGTATTTGACTTTCAA 704 Query 696 CAATGACCAATCGAAAAGTAAAACCATAAGCAATTTAGGTTCCTTAGTTAAGGTCACTAT 755 |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 705 CAATGAAAAATCCAAAAGTAAAACCATAAGCAATTTGGGTTCCTTAGTTAAGGTCAATAT 764 Query 756 TCTTGGCCCCATAAAGATTTCAAGGGTAGTGGGCTGTACGGAGCAACAAATGGCCCATAA 815 ||| |||||| | || |||||||| ||||| |||||| || || |||||||||||||||| Sbjct 765 TCTAGGCCCCTTTAATATTTCAAGTGTAGTTGGCTGTTCGAAGGAACAAATGGCCCATAA 824 Query 816 GTTTCTCACGGGCATCTCAAGAGTTAGGTATCTCATCGTCTCTGAAGATATGATGGAGGT 875 |||||| |||| ||||| | |||||||||||||||||||||||| |||||||||||| | Sbjct 825 CTTTCTCGCGGGTATCTCGACAGTTAGGTATCTCATCGTCTCTGAGGATATGATGGAGTT 884 Query 876 CATC-AGTTCCTACTTGAAAGAAGATTCATTGCCACAGTTTGGCAACTTGTCCTATTTGA 934 ||| | |||||||||||||| |||||||||||||||||| |||||||||||| ||||| Sbjct 885 AATCTA-TTCCTACTTGAAAGTGGATTCATTGCCACAGTTTTGCAACTTGTCCTGTTTGA 943 Query 935 AAGCAAGTGTTTGGTTATCATCCTTTGACTTCCTGGACATCCTGCCAAAGCTTCTTGAAA 994 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 944 AAGCAAGTGTTTGGTTATCATCCTTTGACTTCCTGGACATCCTGCCAAAGCTTCTTGAAA 1003 Query 995 GCTGTCCGAATCTAAAATCCATCGTCTTGGAAACAACTTGTATAGTTGATCGTACGAAAG 1054 ||||||||||||| |||| ||||||||||| ||||||||||||||| |||| ||||||| Sbjct 1004 GCTGTCCGAATCTCAAATTTATCGTCTTGGATACAACTTGTATAGTTAATCGAACGAAAG 1063 Query 1055 CTACGGTAGAAAGGAGAGTCTCGTCTGTGCCTGAGTGTTTGTTGTCATCGCTGGAGTTTG 1114 | | ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 1064 CAATGGTAGAAAGGAGAGTCTCGCCTGTGCCTAAGTGTTTGTTGTCATCGCTGGAGTTTG 1123 Query 1115 TAGAGATAAAAAACAGAATCTCGGTAGATGATGGTGCATTGGAAGTTGCAAGGTACTTTG 1174 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1124 TAGAGATAAAAAACAGAATCTCCGTAGATGATGGTGCATTGGAGGTTGCAAGGTACTTTG 1183 Query 1175 TAGAGAACTCTGTGAATCTACA-GAAAGTTGTTCTGCGTTTGGCATCTTCCTTTCTAAGA 1233 ||||||||||| ||||||| || |||| |||||||| ||||||||||||||||||||||| Sbjct 1184 TAGAGAACTCTATGAATCT-CAAGAAACTTGTTCTGGGTTTGGCATCTTCCTTTCTAAGA 1242 Query 1234 CGA-G----G-AAATCAAGCTGTCTTGAAGGATATCCTTGAATTGCCGAGGCGATCTAGC 1287 | | | | ||||| |||||||| |||||| |||||| ||||||||||||||||||| Sbjct 1243 CTAAGACTAGCAAATCGGGCTGTCTTAAAGGATCTCCTTGCATTGCCGAGGCGATCTAGC 1302 Query 1288 ATGTGTCAGATCGAAGTCTTTAATGCGCTAAACGGCCATGCTCTTTGTTTTCGCAAAAAC 1347 |||||||| |||||||| ||||||||||||||||||| ||||||||||| ||| |||||| Sbjct 1303 ATGTGTCAAATCGAAGTTTTTAATGCGCTAAACGGCCGTGCTCTTTGTTATCGAAAAAAC 1362 Query 1348 AAAATAACCGGCCGTGTTTTCTTAGACTATTTTGA 1382 |||| ||||||||||||| | ||| |||||||| Sbjct 1363 AAAAAAACCGGCCGTGTTGG-T-AGAATATTTTGA 1395 > Ahg948115 jgi|Araly1|948115|scaffold_800002.1 Length=988 Score = 150 bits (81), Expect = 2e-35 Identities = 300/398 (75%), Gaps = 45/398 (11%) Strand=Plus/Plus Query 267 ATGCTTGCACAAGCTCAAGCTAAGTATTCA---G-A--AGAATGAGAATGAT--CC-GTC 317 |||||||||||||||||||||||||||||| | | ||||||||||| | || || Sbjct 86 ATGCTTGCACAAGCTCAAGCTAAGTATTCACCAGGATGAGAATGAGAATCACAACCAGTT 145 Query 318 TTGTGTCACGC-TATGGACAGACTGT-GTGGCTAGGGGTAAACTTCAGCATCTTGATGTT 375 ||||||||||| | |||| ||| | | ||||||| ||| |||||| |||||||||||||| Sbjct 146 TTGTGTCACGCGT-TGGATAGATT-TCGTGGCTAAGGGAAAACTTAAGCATCTTGATGTT 203 Query 376 GAGTTTGGTGGTCGCGTAATGGAGCGTGAGT-TTTGGGAAATGAT---GCCCCTAAGCCT 431 ||| | | || | || | ||| ||| ||||| || |||| |||| ||||||| Sbjct 204 GAGC--GCTT-TCT-G-AA-G---CGTAAGTGTTTGG-AAGTGATCATGCCCGTAAGCCT 253 Query 432 CTATATCTGTAAGACGCTCCTTCACTTGAGACTCTA-TCGGGTATTGTTGGGTA--ACTT 488 || | ||||| ||||| | || |||| |||||| | ||| || ||||| ||| | || Sbjct 254 CTTTGTCTGTCAGACGTTAGTTTACTTAAGACTC-AGTCGCGTGTTGTTTAGTACTAGTT 312 Query 489 T-GATCAGTC-T-GT-TG-ATTCTTTACCTAGTCTCAAGAG-CATGTGTTTAGAAGAAAA 542 | || | || | || || || | |||||| |||| |||| | || || ||||| || Sbjct 313 TTGAGGAATCGTCGTCTGTAT-CATTACCTCGTCTTAAGACTC-TGCGTCTAGAACTCAA 370 Query 543 TGTATATTCTAATGAGGCGAGTCTGGAGTCGCTTATCTCGTCT-TGCCGCGTTCTCGAAG 601 |||||||| |||||| | ||||| |||||||| ||||| | | | || ||| || |||| Sbjct 371 CGTATATTCAAATGAGACAAGTCTAGAGTCGCTAATCTCATATATCCC-CGTGCTTGAAG 429 Query 602 ATTTGACCATTGTTA-A-GA-TAGATGATAACGT-AAG 635 ||||||||||||||| | || ||| |||||| || ||| Sbjct 430 ATTTGACCATTGTTAGAAGAGTAGGTGATAATGTTAAG 467 Score = 82.4 bits (44), Expect = 8e-15 Identities = 87/107 (81%), Gaps = 6/107 (6%) Strand=Plus/Plus Query 659 TGATTGATGCCCCTAGACTCAAGTATTTGACTTTC-AACAATGACC-AATCGAAA-AGTA 715 |||||||||||||||||||||||||||||| | || || | ||| || | || | || Sbjct 592 TGATTGATGCCCCTAGACTCAAGTATTTGAATATCGAAGA-TGAAAGAA-C-AACTATTA 648 Query 716 AAACCATAAGCAATTTAGGTTCCTTAGTTAAGGTCACTATTCTTGGC 762 ||||||||| |||||| ||||||||| ||||||| | |||||||| Sbjct 649 AAACCATAACCAATTTGGGTTCCTTAAACAAGGTCAATCTTCTTGGC 695 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53059711285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5