BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22620.1
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489120 jgi|Araly1|489120|fgenesh2_kg.6__2254__AT5G22620.1 2254 0.0
> Ahg489120 jgi|Araly1|489120|fgenesh2_kg.6__2254__AT5G22620.1
Length=1484
Score = 2254 bits (1220), Expect = 0.0
Identities = 1398/1485 (94%), Gaps = 7/1485 (0%)
Strand=Plus/Plus
Query 17 aaaaataaaataaaaTGATTTCTCTACCACTCACTACACCGATTTTACCCAGCCGGTGTC 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAAATAAAATAAAATGATTTCTCTACCACTCACTACACCGATTTTACCCAGCCGGTGTC 61
Query 77 TTCTCCACAAAACCCGCCGGCAAAACTCGACTCGCCGCCGCTTATTGATTCGATCATCAT 136
| |||||| |||||||||||||||| ||||||| ||||||||| | |||||||||||| |
Sbjct 62 TCCTCCACCAAACCCGCCGGCAAAATTCGACTCACCGCCGCTTCTGGATTCGATCATCGT 121
Query 137 CGAGCTTACAAGACCAATTCACCGTGGAGACGACGAAGCGAGTGGTTCTTGTGAGACATG 196
|||||||||| || ||| |||||| | |||||||||||||||| |||||||| |||||||
Sbjct 122 CGAGCTTACATGAGCAAGTCACCGCGAAGACGACGAAGCGAGTAGTTCTTGTCAGACATG 181
Query 197 GACAGAGCACGTGGAACGAAGAAGGGAGGATTCAAGGAAGCTCCGATTTCTCCGTTTTGA 256
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 182 GACAGAGCACGTGGAACGAAGAAGGGAGAATTCAAGGAAGCTCCGATTTCTCCGTTTTGA 241
Query 257 CGAAGAAAGGCGAGTCTCAGGCTGAAATTTCTCGTCAGATGCTTATCGACGACTCCTTCG 316
|||||||||||||||||||||| || |||||||| |||||||| ||| ||||||| ||||
Sbjct 242 CGAAGAAAGGCGAGTCTCAGGCCGACATTTCTCGCCAGATGCTCATCAACGACTCATTCG 301
Query 317 ATGTCTGCTTCACCAGTCCATTGAAGAGATCAAAGAAAACAGCTGAAATCATATGGGGAA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATGTCTGCTTCACCAGTCCATTGAAGAGATCAAAGAAAACAGCTGAAATCATATGGGGAA 361
Query 377 GTAGAGAAAGTGAGATGATTTTCGATTACGATCTCAGAGAAATCGATCTCTACTCTTTTC 436
|| |||||| ||||||||||||||| ||||| || |||||||||||||||||||| ||||
Sbjct 362 GTCGAGAAAATGAGATGATTTTCGACTACGAGCTTAGAGAAATCGATCTCTACTCGTTTC 421
Query 437 AAG---GTCTACTTAAGAAAGAAGGGAAAGAGAAGTTTGGGGAAGCTTTTAAGCAATGGC 493
||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 422 AAGTAAGTCTACTTAAGAAAGAAGGGAAAGAGAAGTTCGGTGAAGCTTTTAAGCAATGGC 481
Query 494 AAGAAGATCCGGCGAACTTTATCATCGATGGTCATTATCCCGTAAGAGAGTTATGGTCAC 553
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 482 AAGAAGATCCGGCGAACTTCATCATCGATGGTCATTATCCCGTGAGAGAGTTATGGTCAC 541
Query 554 GTGCTAGAAGCTGTTGGCCTGGTATTCTTGCTCATGAGAGCAAGTCTGTTCTCGTTGTTG 613
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 542 GTGCTAGAAGCTGTTGGCCCGGTATTCTTGCTCATGAGAGCAAGTCTGTTCTTGTTGTTG 601
Query 614 CTCATAATGCTGTTAATCAGGCTCTTCTGGCAACAGCAATTGGACTGGGAACAGAATATT 673
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 602 CTCATAATGCTGTTAATCAGGCTCTTGTGGCAACAGCAATTGGACTGGGAACAGAATATT 661
Query 674 TTAGGAGTTTGTTGCAGAGCAATTGTGGTGTAAGTGTATTGGACTTCATACCAAGAGCTG 733
||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 662 TTAGGAGTTTGTTGCAGAGCAATTGCGGTGTAAGTGTACTGGACTTCACACCAAGAGCTG 721
Query 734 ACGGTGGATCTCCTCACGTATGTCTTAATCGACTAAATCAGACACCTAATTCGCCTCTAG 793
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ATGGTGGATCTCCTCACGTATGTCTTAATCGACTAAATCAGACACCTAATTCGCCTCTAG 781
Query 794 CTGGTGGAAGTTCTGGTGGCCGGAAAGCTAGTAAGCAGATTATACTTGTCTGCCATGGTC 853
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 782 CTGGTGGAAGTTCTGGTGGCCGGAAAGCTAGTAAGCAGGTCATACTTGTCTGCCATGGTC 841
Query 854 AGGGGAATAATGAGGATTCTGCTGTTATTAACCAAGCAGCTAATAATGATCAGGCAATGA 913
|||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||
Sbjct 842 AGGGGAATAATGAGGATTCTGCAGTTATTAACCAAGCAGCCACTAATGATCAGTCAATGA 901
Query 914 ACATGCTTGGTGTGATACATTCACAGAAAACCGCAGAGCTTCTACTTGATCTAAGGGTTA 973
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 902 ACATGCTTGGTGTGATACAGTCACAGAAAACCGCAGAGCTTCTTCTTGATCTAAGGGTTA 961
Query 974 GTTCAATAGTTTGCAGCCCTAAAACAGCCTCCATTGAGTCTTCTGGAGTAATATCCCGGG 1033
|||| |||||||||||||||||| |||||||| ||||| || ||||||||||||||||||
Sbjct 962 GTTCTATAGTTTGCAGCCCTAAAGCAGCCTCCGTTGAGACTGCTGGAGTAATATCCCGGG 1021
Query 1034 TGCAAGAAGCTGCGGGTTGTTTAGGTGTAGATAATGTGCCTCACTACGTGAAAACGAAAC 1093
||||| ||||||| ||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1022 TGCAAAAAGCTGCTGGTTGTTTAGGTGTAGATAGTGTGCCTCGCCACGTGAAAACGAAAC 1081
Query 1094 AAATGAATGAGCTTGATGTTGAGAGTGTTCTTCGCAAATCCAATAAGGACAATGATGTGA 1153
||||||||||||| ||||||||| |||||||||||||||| ||| ||||||| |||||||
Sbjct 1082 AAATGAATGAGCTCGATGTTGAGGGTGTTCTTCGCAAATCTAATCAGGACAACGATGTGA 1141
Query 1154 TTGCAAGTCAATTAGACGAAGAAGCGTTTTCAGCTCTGTGGAACAGATCCGAGAAA-GCA 1212
|||||||||| ||||||||||||||| |||||||||| ||||||||||||| |||| |||
Sbjct 1142 TTGCAAGTCAGTTAGACGAAGAAGCGGTTTCAGCTCTATGGAACAGATCCG-GAAAAGCA 1200
Query 1213 TGGGAATCACTCTTAGACGAACTATCGGATGAGAAGTCAAACCCTGGAGAAATCATGGTG 1272
||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 1201 TGGGAATCACTCTTAGACGAACTATCGGACGAGGAGTCAAACCCAGGAGAAATCATGGTG 1260
Query 1273 GTGGTTGGTCCTGCAATGACTCACATTTCACTCATAGCACAATGCCTTAACCTCACTAAA 1332
|||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1261 GTGGTTGGTCCTCCAATGACTCACATATCGCTCATCGCACAATGCCTTAACCTCACTAAA 1320
Query 1333 GAAGCGCTCGGGTTGTTTCACCTAGACGCAGGTAGCATCAGTGTCATAGATTTCCCGGAT 1392
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GAAGGGCTCGGGCTGTTCCACCTAGACGCAGGTAGCATCAGTGTCATAGATTTCCCGGAT 1380
Query 1393 GGTCCTAGTAGCAA-AGGAGTAATCCGTTGCACAAACTACACCGCTCATCTTGGAAGATG 1451
|||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 GGTCCTAGCAG-AAGAGGAGTAATCCGTTGTACAAACTACACCGCTCATCTTGGAAGATG 1439
Query 1452 GTCCATCCCTATCACAAAACCCGCCTGAAGAATCTTGTCTTAAAC 1496
|| |||||| ||||||| |||||||||||||||| ||||||||||
Sbjct 1440 GTGCATCCCGATCACAAGACCCGCCTGAAGAATCCTGTCTTAAAC 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5