BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22630.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941770 jgi|Araly1|941770|scaffold_602314.1 2025 0.0
Ahg924771 jgi|Araly1|924771|scaffold_200332.1 169 8e-41
Ahg949206 jgi|Araly1|949206|scaffold_801093.1 161 1e-38
Ahg901551 jgi|Araly1|901551|Al_scaffold_0004_2201 161 1e-38
Ahg949030 jgi|Araly1|949030|scaffold_800917.1 132 1e-29
Ahg889699 jgi|Araly1|889699|Al_scaffold_0007_1685 132 1e-29
Ahg930205 jgi|Araly1|930205|scaffold_302662.1 126 5e-28
Ahg907155 jgi|Araly1|907155|Al_scaffold_0002_236 126 5e-28
> Ahg941770 jgi|Araly1|941770|scaffold_602314.1
Length=1347
Score = 2025 bits (1096), Expect = 0.0
Identities = 1271/1351 (94%), Gaps = 29/1351 (2%)
Strand=Plus/Plus
Query 280 ttttttcatttttCGACTCAAATCATGCAAACCATTTCGCCTGCGTTCTCGTGCGATCTC 339
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 TTTTTTTATTTTTCGACTCAAATCATGCAAACCATTTCGCCTGCGTTCTCATGCGATCTC 60
Query 340 AAATCCGTAATTCAACCGAATCTAACGGCTAAGAAAGCGCGTTACTCTCACGTAAATGGA 399
|||||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 61 AAATCCGTCATTCAACCAAATCTAACGGCAAAGAACGCGCGTTACTCTCAAGTAAATGGA 120
Query 400 AAGCGCGTGTCTGTTCGTTGCAGTTACAGGTCTGAGTCGTTTAGCTTCCCTAACGGTGTT 459
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGCGCGTGTCTGTTCGTTGCGGTTACAGGTCTGAGTCGTTTAGCTTCCCTAACGGTGTT 180
Query 460 GGCTCAAGCCGAGCCGATTGGCAAAGCTCATGCGCCATCTTAGCCAGTAAAGTAGTTTCG 519
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GGCTCAAGTCGAGCCGATTGGCAAAGCTCATGCGCCATCTTAGCCAGCAAAGTAGTTTCG 240
Query 520 GCTGAGAATTCAAG---------C-------T--CCG-TC--G-C-C-GTCGTTAACGGA 555
|||||||||||||| | | ||| || | | | |||||||||||
Sbjct 241 GCTGAGAATTCAAGCTCAATCACCGGTGGTTTAGCCGATCAAGTCGCTGTCGTTAACGGT 300
Query 556 CACAGTAACGGCTCCGTTGATTTAAGCCTTGTTCCGTCAAAGTCGCAGCACAACGGAAAG 615
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 301 CACAGTAACGGCTCCGTTGATCTAAGCCTTGTTCCGTCAAAGTCGCAGCATAACGGAAAG 360
Query 616 CCTGGATTGATTCAGCCGTTAACGATAACAGATCTATCTCCCGCGCCGTCTCATGGATCT 675
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CCTGGATTGATTCAGCCGTTAACGATAACAGATCTATCTCCGGCGCCGTCTCATGGATCT 420
Query 676 ACTCTTCGTGTCGCGTATCAAGGAGTTCCGGGAGCGTACTCCGAAGCGGCCGCCGGAAAA 735
||||| ||||| ||||| ||||||||||| || || || |||||||| ||||||||||||
Sbjct 421 ACTCTCCGTGTAGCGTACCAAGGAGTTCCCGGCGCTTATTCCGAAGCAGCCGCCGGAAAA 480
Query 736 GCTTACCCAAACTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGTTTCAGGCGGTG 795
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GCTTACCCGAACTCTGAAGCTATTCCTTGTGATCAGTTCGACGTTGCGTTTCAGGCGGTG 540
Query 796 GAGCTTTGGATCGCCGATCGTGCTGTTCTCCCAGTTGAGAACTCTCTCGGTGGTTCGATT 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGCTTTGGATCGCCGATCGTGCTGTTCTCCCAGTTGAGAACTCTCTCGGTGGTTCGATT 600
Query 856 CATAGAAATTACGATCTTCTCCTCCGTCACCGTCTCCACATCGTCGGAGAAGTTCAGATC 915
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATAGAAATTACGATCTCCTCCTCCGTCACCGTCTCCACATCGTCGGAGAAGTTCAGATC 660
Query 916 CCGGTTCACCACTGTCT-CTTAGCTCTTCCCGGAGTTCGTACGGATTGCATCACGCGAGT 974
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCGGTTCACCACTGTCTCCTT-GCTCTTCCCGGAGTTCGTACGGATTGCATCACGCGAGT 719
Query 975 GATTTCGCATCCTCAAGCTCTGGCTCAGACGGAAGGATCGCTCAACAAACTCACTCCAAA 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GATTTCGCATCCTCAAGCTCTGGCTCAGACGGAAGGATCGCTCAACAAACTCACTCCAAA 779
Query 1035 AGCAGCGATTGAAGCGTTTCACGACACAGCCGCGGCGGCGGAATACATCGCTGCTAACAA 1094
|||||||||||| |||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 780 AGCAGCGATTGAGGCGTTTCACGACACAGCCGCGGCGGCTGAATACATCGCGGCGAATAA 839
Query 1095 CCTCCACGACACGGCGGCGGTAGCGAGCGCAAGAGCAGCTGAGCTCTACGGACTTCAGAT 1154
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 840 CCTCCACGACACGGCGGCGGTTGCGAGCGCAAGAGCAGCTGAGCTTTACGGACTTCAGAT 899
Query 1155 TCTCGCCGACGGGATCCAAGACGACGCAGGAAACGTCACGCGCTTCCTTATGTTGGCGCG 1214
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 900 TCTCGCCGACGGGATCCAAGACGACGCAGGAAACGTCACGCGCTTCCTTATGCTAGCGCG 959
Query 1215 TGATCCGATCATTCCCCGTACCGATCGTCCGTTTAAAACGAGTATCGTTTTCGCAGCTCA 1274
|||||| ||||| ||||| || ||||||||||||||||| |||||||||||||| |||||
Sbjct 960 TGATCCAATCATCCCCCGCACGGATCGTCCGTTTAAAACAAGTATCGTTTTCGCCGCTCA 1019
Query 1275 AGAACATAAAGGAACTAGCGTTTTATTCAAAGTGCTTTCCGCGTTTGCGTTTCGAAACAT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAACATAAAGGAACTAGCGTTTTATTCAAAGTGCTTTCCGCGTTTGCGTTTCGAAACAT 1079
Query 1335 TAGTTTGACGAAAATCGAATCGCGGCCGCATCAGAATTGTCCCGTTAGAGTCGTAGGCGA 1394
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1080 CAGCTTGACGAAAATCGAATCGCGGCCGCATCATAATTGCCCCGTTAGAGTCGTCGGCGA 1139
Query 1395 CGAAAACGTTGGAACATCGAAGCACTTTGAGTACACATTCTACGTCGACTTCGAAGCGTC 1454
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1140 CGAAAACGTAGGAACATCGAAGCACTTTGAGTACACCTTCTACGTCGATTTCGAAGCGTC 1199
Query 1455 GATGGCGGAGGCGCGTGCACAAAACGCGTTAGCGGAGGTGCAAGAGTACACGTCATTCCT 1514
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GATGGCAGAGGCGCGTGCACAAAACGCGTTAGCGGAGGTGCAAGAGTACACGTCATTCCT 1259
Query 1515 CAGGGTGCTGGGAAGTTACCCAATGGATATGACGCCATGGTCCACGTTACCTAGCGAAGA 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CAGGGTGCTGGGAAGTTACCCAATGGATATGACGCCATGGTCCACGTTACCTAGCGAAGA 1319
Query 1575 CGTATGACACAATTAAAAAATTTATCTGAAT 1605
||||||||| ||| || || |||||||||||
Sbjct 1320 CGTATGACA-AAT-AATAA-TTTATCTGAAT 1347
> Ahg924771 jgi|Araly1|924771|scaffold_200332.1
Length=368
Score = 169 bits (91), Expect = 8e-41
Identities = 215/270 (80%), Gaps = 27/270 (10%)
Strand=Plus/Plus
Query 667 CATGGATCTACTCTTCGTGTCGCGTATCAAGGAGTTC-CGGGAGCGTA-CTCCGAAGCGG 724
|||||||||||||| ||||| |||||||||||||||| | || | ||| | |||||
Sbjct 122 CATGGATCTACTCTCCGTGTAGCGTATCAAGGAGTTCTC-GGCGTGTATTTTTGAAGCTA 180
Query 725 CCGCCGGAAAAGCTTA-CCCAAACTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCG 783
|| |||||||||| || | ||| || |||| ||||| |||||||||||||| ||||||
Sbjct 181 CCACCGGAAAAGCATATTCGAAA-TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCG 239
Query 784 TTTCAGGCGGTGGAGCTTTGGATCGCCGATCGTGCT-GTTCTCCCAGTTGAGAACTCTCT 842
||||||||||||||||||||||||||||||||| || ||| | ||| | || ||| ||
Sbjct 240 TTTCAGGCGGTGGAGCTTTGGATCGCCGATCGT-CTTGTTTTGCCAATCGA-AAC-CT-- 294
Query 843 CGGTGGTTCGATTCATAGAAATTACGATCTTCTCCTCCGTCACCGTCTCCACATCGTCGG 902
| | |||| ||||||||| |||||| |||||| ||| |||||||||||
Sbjct 295 ----------A---A-AGAA-TTACGATCTCCTCCTC-GTCACCATCTTCACATCGTCGG 338
Query 903 AGAAGTTCAGATCCCGGTTCACCACTGTCT 932
|| ||| ||||||||||||||||||||||
Sbjct 339 CGAGGTTTAGATCCCGGTTCACCACTGTCT 368
> Ahg949206 jgi|Araly1|949206|scaffold_801093.1
Length=295
Score = 161 bits (87), Expect = 1e-38
Identities = 130/151 (86%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 667 CATGGATCTACTCTTCGTGTCGCGTATCAAGGAGTTCCGGGAGCGTACTCCGAAGCGGCC 726
|||||||||||||| ||||| ||||||||||||||||| | | ||| | ||||| ||
Sbjct 99 CATGGATCTACTCTCCGTGTAGCGTATCAAGGAGTTCCCAGCGTGTATTTTGAAGCTACC 158
Query 727 GCCGGAAAAGCTTA-CCCAAACTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGTT 785
|||||||||| || || ||| || |||| ||||| |||||||||||||| ||||||||
Sbjct 159 ACCGGAAAAGCATATCCGAAA-TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCGTT 217
Query 786 TCAGGCGGTGGAGCTTTGGATCGCCGATCGT 816
|||||||||||||||||||||||||||||||
Sbjct 218 TCAGGCGGTGGAGCTTTGGATCGCCGATCGT 248
> Ahg901551 jgi|Araly1|901551|Al_scaffold_0004_2201
Length=360
Score = 161 bits (87), Expect = 1e-38
Identities = 131/152 (86%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 667 CATGGATCTACTCTTCGTGTCGCGTATCAAGGAGTTC-CGGGAGCGTACTCCGAAGCGGC 725
|||||||||||||| ||||| |||||||||||||||| | || | ||| | ||||| |
Sbjct 187 CATGGATCTACTCTCCGTGTAGCGTATCAAGGAGTTCTC-GGCGTGTATTTTGAAGCTAC 245
Query 726 CGCCGGAAAAGCTTA-CCCAAACTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGT 784
| |||||||||| || || ||| || |||| ||||| |||||||||||||| |||||||
Sbjct 246 CACCGGAAAAGCATATCCGAAA-TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCGT 304
Query 785 TTCAGGCGGTGGAGCTTTGGATCGCCGATCGT 816
||||||||||||||||||||||||||||||||
Sbjct 305 TTCAGGCGGTGGAGCTTTGGATCGCCGATCGT 336
> Ahg949030 jgi|Araly1|949030|scaffold_800917.1
Length=266
Score = 132 bits (71), Expect = 1e-29
Identities = 111/130 (85%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 689 CGTATCAAGGAGTTC-CGGGAGCGTACTCCGAAGCGGCCGCCGGAAAAGCTTA-CCCAAA 746
||||||||||||||| | || | ||| | ||||| || |||||||||| || || |||
Sbjct 92 CGTATCAAGGAGTTCTC-GGCGTGTATTTTGAAGCTACCACCGGAAAAGCATATCCGAAA 150
Query 747 CTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGTTTCAGGCGGTGGAGCTTTGGAT 806
|| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 151 -TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCGTTTCAGGCGGTGGAGCTTTGGAT 209
Query 807 CGCCGATCGT 816
||||||||||
Sbjct 210 CGCCGATCGT 219
> Ahg889699 jgi|Araly1|889699|Al_scaffold_0007_1685
Length=231
Score = 132 bits (71), Expect = 1e-29
Identities = 111/130 (85%), Gaps = 4/130 (3%)
Strand=Plus/Plus
Query 689 CGTATCAAGGAGTTC-CGGGAGCGTACTCCGAAGCGGCCGCCGGAAAAGCTTA-CCCAAA 746
||||||||||||||| | || | ||| | ||||| || |||||||||| || || |||
Sbjct 80 CGTATCAAGGAGTTCTC-GGCGTGTATTTTGAAGCTACCACCGGAAAAGCATATCCGAAA 138
Query 747 CTCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGTTTCAGGCGGTGGAGCTTTGGAT 806
|| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 139 -TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCGTTTCAGGCGGTGGAGCTTTGGAT 197
Query 807 CGCCGATCGT 816
||||||||||
Sbjct 198 CGCCGATCGT 207
> Ahg930205 jgi|Araly1|930205|scaffold_302662.1
Length=296
Score = 126 bits (68), Expect = 5e-28
Identities = 109/129 (84%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 689 CGTATCAAGGAGTTCCGGGAGCGTACTCCGAAGCGGCCGCCGGAAAAGCTTA-CCCAAAC 747
|||||||||||||||| || | ||| | ||||| || | |||||||| || || |||
Sbjct 122 CGTATCAAGGAGTTCCCGGCGTGTATTTTGAAGCTACCACTGGAAAAGCATATCCGAAA- 180
Query 748 TCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGTTTCAGGCGGTGGAGCTTTGGATC 807
|| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCGTTTCAGGCGGTGGAGCTTTGGATC 240
Query 808 GCCGATCGT 816
|| ||||||
Sbjct 241 GCTGATCGT 249
> Ahg907155 jgi|Araly1|907155|Al_scaffold_0002_236
Length=348
Score = 126 bits (68), Expect = 5e-28
Identities = 109/129 (84%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 689 CGTATCAAGGAGTTCCGGGAGCGTACTCCGAAGCGGCCGCCGGAAAAGCTTA-CCCAAAC 747
|||||||||||||||| || | ||| | ||||| || | |||||||| || || |||
Sbjct 197 CGTATCAAGGAGTTCCCGGCGTGTATTTTGAAGCTACCACTGGAAAAGCATATCCGAAA- 255
Query 748 TCCGAAGCTATTCCTTGTGATCAATTCGACGTTGCGTTTCAGGCGGTGGAGCTTTGGATC 807
|| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 256 TCTGAAGATATTCGGTGTGATCAATTCGATGTTGCGTTTCAGGCGGTGGAGCTTTGGATC 315
Query 808 GCCGATCGT 816
||||||||
Sbjct 316 ACCGATCGT 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5