BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22650.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894139 jgi|Araly1|894139|Al_scaffold_0006_2135 1009 0.0
> Ahg894139 jgi|Araly1|894139|Al_scaffold_0006_2135
Length=924
Score = 1009 bits (546), Expect = 0.0
Identities = 778/887 (88%), Gaps = 27/887 (3%)
Strand=Plus/Plus
Query 116 GGAGTTGCGGTGACACCAAAAAACGCTACTAAGGTGACTCCTGAAGAAGACAGCCTTGTC 175
||||||| |||| |||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 31 GGAGTTGAAGTGAAACCAGGGAACCCTACTAAGGTGACTCCTGAAGAAGACTGCCTTGTC 90
Query 176 CACATTTCTCAGGCTTCACTTGACTGCACAGTGAAATCTGGAGAATCTGTGGTTTTGAGT 235
||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| |
Sbjct 91 CACATTTCTCAGGCTTCCCTTGACTGCAAAGTGAAATCTGGAGAATCTGTGCTTTTGACT 150
Query 236 GTGACTGTTGGTGGGGCTAAACTTGTTATTGGAACACTTTCACAAGACAAGTTCCCTCAG 295
|| ||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 151 GTCACTGTTGATGGGACTAAGCTTGTTATTGGAACACTTTCACAAGAGAAGTTCCCTCAG 210
Query 296 ATTAGCTTTGATTTGGTTTTTGATAAAGAGTTTGAGCTTTCACACAGCGGTACCAAAGCA 355
||||||||||||||||| ||||| | ||||||||||||||| |||| |||||||||| |
Sbjct 211 ATTAGCTTTGATTTGGTCTTTGAGAGAGAGTTTGAGCTTTCCCACAATGGTACCAAAGGA 270
Query 356 AATGTTCATTTCATTGGCTACAAATCCCCCAACATCGAGCAGGATGACTTCACTAGTTCG 415
| || || ||||||||||||| ||||||||||||||| || || |||| |||||||||
Sbjct 271 ACCGTCCACTTCATTGGCTACAGATCCCCCAACATCGACCATGAGGACTACACTAGTTCA 330
Query 416 GATGATGAGGATGTTCCTGAAGCTGTTCCTGCTCCTGCCCCTACTGCTGTTACTGCCAAC 475
|| || |||||||||||||||||||| ||||| |||| ||| | |||||| ||| |||
Sbjct 331 GAAGAGGAGGATGTTCCTGAAGCTGTCCCTGCCCCTGTTCCTGCAGCTGTTGCTGTCAAT 390
Query 476 GGAAATGCTGGAGCA---G---C---TGTTGTCAAGGCTGACACAAAGCCAAAGGCCAAA 526
|||| |||||||||| | | |||||||||||||||| ||||||||||||||||
Sbjct 391 GGAAGTGCTGGAGCAGCTGCTTCGAATGTTGTCAAGGCTGACTCAAAGCCAAAGGCCAAG 450
Query 527 CCTGCCGAAGTGAAGCCTGCAGAAGAGAAGCCTGAATCAGACGA-G--gaagatgagtct 583
||||| ||||||||||||||||||| ||| ||||||||||| || | || ||| |||
Sbjct 451 CCTGCAGAAGTGAAGCCTGCAGAAGTGAAACCTGAATCAGAAGATGATGAGGATTCCTCT 510
Query 584 gatgatgaagatgagtctgaagaggatgatgactctgagaaaggaatggatgttgatgaa 643
|| || ||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 511 GACGAGGAAGATGAGTCTGCTGATGATGATGACTCTGAGAAAGGAATGGATGTTGACGAG 570
Query 644 gatgaCTCAGATGATGACGAGGAGGAGGATTCTGAGGATGAAGAAGAGGAGGAGACTCCT 703
||||| || |||||| |||||||| || || ||||| |||||||| | ||||||||
Sbjct 571 GATGATTC---TGATGATGAGGAGGATGAATCAGAGGAAGAAGAAGA--A-GAGACTCCC 624
Query 704 AAGAAGCCTGAGCCAATCAACAAGAAGAGGCCAAATGAATCTGTATCCAAAACACCCGTC 763
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct 625 AAGAAGCCTGAGCCAATCAACAAGAAGAGGCCTAATGAATCTACATCCAAAACACCTGTC 684
Query 764 TCTGGAAAGAAGGCAAAACCAGCAGCAGCACCAGCTTCTACTCCTCAGAAGACAGAAGAG 823
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 685 TCTGGAAAGAAGGCAAAACCAGCAGCAGCACCAGCAGCTACTCCTCAGAAGACAGAAGAG 744
Query 824 AAGAAGAAAGGAGGACACACCGCCACACCACACCCAGCTAAGAAGGGTGGAAAGTCTCCT 883
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 745 AAGAAGAAAGGAGGACACACAGCCACACCACACCCAGCTAAGAGGGGTGGAAAGTCTCCT 804
Query 884 GTGAATGCTAACCAGAGCCCCAAGTCTGGAGGTCAATCATCCGGTGGTAACAACAACAAG 943
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 805 GTGAATGCTAACCAGAGCCCCAAGGCTGGAGGTCAATCATCCGGTGGTAACAA------G 858
Query 944 AAGCCATTCAACTCAGGCAAACAATTTGGTGGTTCCAACAACAAGGG 990
|| |||||| || |||||||||||||||||||| |||||||||||
Sbjct 859 AA---ATTCAATTCGGGCAAACAATTTGGTGGTTCTAACAACAAGGG 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5