BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22670.1
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489122 jgi|Araly1|489122|fgenesh2_kg.6__2256__AT5G22670.1 1543 0.0
> Ahg489122 jgi|Araly1|489122|fgenesh2_kg.6__2256__AT5G22670.1
Length=1173
Score = 1543 bits (835), Expect = 0.0
Identities = 1071/1182 (91%), Gaps = 28/1182 (2%)
Strand=Plus/Plus
Query 163 TTTAACGTTTCAGAGTTCCATGGTTACTATGAATTTGCGCGTGTTGTCCATGGTTTTCTA 222
||| |||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 4 TTTGACGTTTTAGAGTTCCGTGGTTACTATGAATTTGCGAGTGTTGTCCATGGCTTTCTA 63
Query 223 GATA-CCTCTAGAGAGACATGCATACACAAACTCAAACTTGCTTTTGaa-aaaaaaCAGC 280
|||| || |||| |||||||| |||||||| || ||||||||| || || | ||| ||||
Sbjct 64 GATATCC-CTAGGGAGACATGTATACACAAGCTTAAACTTGCTCTT-AATAGAAATCAGC 121
Query 281 ATGAT-AGGTCTTACTTGACGCAGTGGATCCACAATGCGGTTAAGCGTAAAGTACAACAT 339
|||| | ||||||||||||||||||||| ||||||||||||| || | |||| ||| ||
Sbjct 122 GTGATCA-GTCTTACTTGACGCAGTGGATACACAATGCGGTTATGCTTGAAGTTCAAGAT 180
Query 340 TTGG--A---TAT-AGGTCGTTGGAGTTATTTAGGTCA-GGAGCTGATACCCCATAGCCT 392
|||| | ||| | || ||||||||||||||||| | ||||||||| |||| ||||||
Sbjct 181 TTGGATATTTTATCATGTGGTTGGAGTTATTTAGGT-ACGGAGCTGATGCCCCTTAGCCT 239
Query 393 TTACACCTGTGAGACTCTGGTATCCTTGCGACTCCATAATGTGTCATTGCCTGATTTTGA 452
|||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||
Sbjct 240 TTACACCTGTGAGACTCTTGTATCCTTGAAACTCCATTATGTGTCATTGCCTGATTTTGA 299
Query 453 TCATGTTTCTCTACCTCGTCTCAA-AACAATGCATTTA-ATAGACAACATTTACCCTAAT 510
| |||||||||||||||||||||| | | ||||||||| | |||||||||||||||||||
Sbjct 300 TTATGTTTCTCTACCTCGTCTCAAGATC-ATGCATTTAGA-AGACAACATTTACCCTAAT 357
Query 511 GATGCTCTTCTGGAGAATCTAATCTCATCTTGCCCAGTTCTTGAAGATTTAAATGTCTCT 570
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATGCTCTGCTGGAGAATCTTATCTCATCTTGCCCAGTTCTTGAAGATTTAAATGTCTCT 417
Query 571 AGAGATGTAGAGAACATTGTTAAGGTTTTACGAGTGCGTTCTCTGTCGTTAAAGAGTCTC 630
|||||| ||||||| || |||||||||||||||||| |||||||||| ||||||||||||
Sbjct 418 AGAGATTTAGAGAATATCGTTAAGGTTTTACGAGTGTGTTCTCTGTCATTAAAGAGTCTC 477
Query 631 ATACTTGCTCTCGATGGTGATCGGTATGGGGATATTGAAGATGATAGTTGGGAGGTTGTG 690
||||||| |||||||||||||||| | ||||||| |||||| ||||||||||||||
Sbjct 478 ATACTTGTTCTCGATGGTGATCGG--T----ATATTGAGGATGATGGTTGGGAGGTTGTG 531
Query 691 ATTGATGCTCCTAGACTCAGCTATTTGAGTCTTAGAGATGACCAGTCTAAAAGTTTCGTA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ATTGATGCTCCTAGACTCAGCTATTTGAGTCTTAGAGATGACCAGTCTAAAAGTTTCGTA 591
Query 751 TTAAGTAGTGTGACTTCACCTGCCAAGGTAGATATTGATGTAACTTTCGATGT-GGTGAG 809
||||| ||| ||| ||||||| ||||||||||||||||| | | ||||||| | ||||||
Sbjct 592 TTAAGCAGTTTGAGTTCACCTACCAAGGTAGATATTGATATCAGTTTCGAT-TCGGTGAG 650
Query 810 AAGTGTATTGAAAAATTTC-CTGTTAACGAGAAGTGTAGTGAGAAACTTCTTCACCAGGC 868
||||||||||| |||| || || |||| ||||||||||||||||||||||||||||||||
Sbjct 651 AAGTGTATTGAGAAATGTCTCT-TTAAAGAGAAGTGTAGTGAGAAACTTCTTCACCAGGC 709
Query 869 TCTCGAGCGTAAGGGACATGACTATGAGTGGAACAACTTTAAAGGTCCTCTCTCGCTACA 928
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 710 TCTCGAGCGTAAGGGACATGACTATGAGTGGAACAACTTTGAAGGTCCTCTCTCGCTCCA 769
Query 929 TGAGACACGAACCACTGCCTCAGTTTCCTAACATGATCCAATTCTATGCGGTCTTTTGTA 988
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 770 TGAGACACGAACCGCTGCCACAGTTTCCTAACATGATCCAATTCTATGCGGTCTTCTATA 829
Query 989 ACTCTGATTTGGAAAAGTTGCCAAACTTTCTTGAGAGCTGTCCAAATCTCAAATCTCTTG 1048
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 830 ACTCTGATTTGGAAAAGCTACCAAACTTTCTTGAGAGCTGTCCAAATCTCAAATCTCTTG 889
Query 1049 TATTGGAACTGGAGGTATTTAAGAAGAACGACTTACTTATTCTCTCATCATCAATTCCAA 1108
|| |||| ||||||| |||||||||||| || |||||||||||||||||||||| ||||
Sbjct 890 TACTGGAGCTGGAGGAATTTAAGAAGAATGAAATACTTATTCTCTCATCATCAATCCCAA 949
Query 1109 AATGTTTGAGATCATCTCTGGAGCACGTTGAGATTCATACACCGATAAGCGGAGCTGAAG 1168
||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||
Sbjct 950 AATGTTTAAGATCATCCCTGGAGTACGTTGAGATTCATACACGGATAAGCGGAGCTGAAC 1009
Query 1169 CTGAAATGAAACTAGTAAAGTACTTCCTCGAGAATTCGGCAGTGCTCAAGAAGTTTACAT 1228
| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1010 CGGAAATGAAATTAGTAAAGTATTTCCTCGAGAATTCGGCAGTGCTCAAGAAGTTTATGC 1069
Query 1229 TGCAATTGGGTTGTAAGAGAATGGACGAAGAGTCTATCATCTTCAAGGAACTCTTGAGAT 1288
||| ||||||| |||| |||||||| ||||| ||||||||||||| ||||||| ||||||
Sbjct 1070 TGCGATTGGGTGGTAAAAGAATGGAGGAAGATTCTATCATCTTCAGGGAACTCCTGAGAT 1129
Query 1289 TTAGGAGATGTTCTGCTTCTTGTGAAGTTGTTGTTGAAGTTT 1330
||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1130 TTAGGAGATGTTCTGCTTCGTGTGAAGTTGTTGTTGAAGTTT 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5