BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22680.1
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941774 jgi|Araly1|941774|scaffold_602318.1 292 2e-78
Ahg915765 jgi|Araly1|915765|Al_scaffold_0008_516 211 5e-54
> Ahg941774 jgi|Araly1|941774|scaffold_602318.1
Length=922
Score = 292 bits (158), Expect = 2e-78
Identities = 269/318 (85%), Gaps = 25/318 (8%)
Strand=Plus/Plus
Query 140 ACAATGCCTTTGTGGGTTATATATATGAACAAGTTCCTAGA-TTCTATAGGGAAGAAAAA 198
||||||| |||||||||| | ||| ||| ||||||||| | |||| |||||||| | ||
Sbjct 1 ACAATGCATTTGTGGGTT-T-TAT-GGAA-AAGTTCCTAAATTTCTCTAGGGAAG-AGAA 55
Query 199 AT-ATGCTTGGAC-A----A-GCTAAGTATTCTAAAGGATGTGA---ATGA-CAAGTCTT 247
| ||||||| || | | ||||||||||| ||||| || || |||| | | ||||
Sbjct 56 GTCATGCTTGTACAAGCTCAGGCTAAGTATTCAAAAGGGTGAGAGTGATGATC-ACTCTT 114
Query 248 GTGTCACGCGTTGGATAGATTTTGTGGCTACGCCTAAACTTAAGGATCTTGATGTTGAGT 307
||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||
Sbjct 115 GTGTCACGCGTTGGATAGATTTTGTGGCTACACCTAAACTTAAGCATCTTGAAGTTGAGT 174
Query 308 TTGGTCCTCTGAAGCGTGAGTGTTTGGAAGTGATGCC-TGTAAGCCTCTATATCTGTCAG 366
|||||||| |||||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 175 TTGGTCCTGTGAAGCGTGAGTGTTTGGAAGTGATGCCCT-TAAGCCTCTATATCGGTGAG 233
Query 367 ACACTCCTTTACTTAAGACTCCATCGG-TATTGTTTGG-TA-GTTTCGAGTTTGTTTCAT 423
|||||||||| ||||||||||||| || |||| ||||| || |||| |||| ||| || |
Sbjct 234 ACACTCCTTTTCTTAAGACTCCATAGGGTATT-TTTGGGTAAGTTT-GAGTCTGTGTCTT 291
Query 424 TACCTCGTCTCAGGACTA 441
||||| |||||| |||||
Sbjct 292 TACCTTGTCTCAAGACTA 309
> Ahg915765 jgi|Araly1|915765|Al_scaffold_0008_516
Length=780
Score = 211 bits (114), Expect = 5e-54
Identities = 202/242 (83%), Gaps = 15/242 (6%)
Strand=Plus/Plus
Query 211 AAGCTAAGTATTC-T-A-AAGGATGTGAATG---ACAAGTCTTGTGTCACGCGTTGGATA 264
||||||||||||| | | || || | ||||| ||||||||||||||||||||||||||
Sbjct 28 AAGCTAAGTATTCGTAAGAAAGAAGAGAATGATAACAAGTCTTGTGTCACGCGTTGGATA 87
Query 265 GATTTTGTGGCTACGCCTAAACTTAAGGATCTTGATGTTGAGTTTGGTCCTCTG-AAGCG 323
||||||||||||| | ||||||| || ||||||||||||||| | || | || ||| |
Sbjct 88 GATTTTGTGGCTAAGAGTAAACTTCAGCATCTTGATGTTGAGTGTCTTCTT-TGGAAGAG 146
Query 324 TGAGTGTTTGGAAGTGATGCC-TGTAAGCCTCTATATCT-GTCAGACACTCCTTTACTTA 381
|||| |||||||||||||||| | ||||||||||||| | || |||| || |||||||||
Sbjct 147 TGAGAGTTTGGAAGTGATGCCAT-TAAGCCTCTATAT-TAGTAAGACGCTTCTTTACTTA 204
Query 382 AGACTCCATCG-GTATTGTTTGGTAGT-TTCGAGTTTGTTTCATTACCTCGTCTCAGGAC 439
||||||||| | ||| |||| |||| | || |||| | ||||||||||| |||||| |||
Sbjct 205 AGACTCCATGGAGTAATGTTAGGTAATGTT-GAGTCTATTTCATTACCTTGTCTCAAGAC 263
Query 440 TA 441
||
Sbjct 264 TA 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26037952311
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5