BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22680.1 Length=708 Score E Sequences producing significant alignments: (Bits) Value Ahg941774 jgi|Araly1|941774|scaffold_602318.1 292 2e-78 Ahg915765 jgi|Araly1|915765|Al_scaffold_0008_516 211 5e-54 > Ahg941774 jgi|Araly1|941774|scaffold_602318.1 Length=922 Score = 292 bits (158), Expect = 2e-78 Identities = 269/318 (85%), Gaps = 25/318 (8%) Strand=Plus/Plus Query 140 ACAATGCCTTTGTGGGTTATATATATGAACAAGTTCCTAGA-TTCTATAGGGAAGAAAAA 198 ||||||| |||||||||| | ||| ||| ||||||||| | |||| |||||||| | || Sbjct 1 ACAATGCATTTGTGGGTT-T-TAT-GGAA-AAGTTCCTAAATTTCTCTAGGGAAG-AGAA 55 Query 199 AT-ATGCTTGGAC-A----A-GCTAAGTATTCTAAAGGATGTGA---ATGA-CAAGTCTT 247 | ||||||| || | | ||||||||||| ||||| || || |||| | | |||| Sbjct 56 GTCATGCTTGTACAAGCTCAGGCTAAGTATTCAAAAGGGTGAGAGTGATGATC-ACTCTT 114 Query 248 GTGTCACGCGTTGGATAGATTTTGTGGCTACGCCTAAACTTAAGGATCTTGATGTTGAGT 307 ||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| Sbjct 115 GTGTCACGCGTTGGATAGATTTTGTGGCTACACCTAAACTTAAGCATCTTGAAGTTGAGT 174 Query 308 TTGGTCCTCTGAAGCGTGAGTGTTTGGAAGTGATGCC-TGTAAGCCTCTATATCTGTCAG 366 |||||||| |||||||||||||||||||||||||||| | |||||||||||||| || || Sbjct 175 TTGGTCCTGTGAAGCGTGAGTGTTTGGAAGTGATGCCCT-TAAGCCTCTATATCGGTGAG 233 Query 367 ACACTCCTTTACTTAAGACTCCATCGG-TATTGTTTGG-TA-GTTTCGAGTTTGTTTCAT 423 |||||||||| ||||||||||||| || |||| ||||| || |||| |||| ||| || | Sbjct 234 ACACTCCTTTTCTTAAGACTCCATAGGGTATT-TTTGGGTAAGTTT-GAGTCTGTGTCTT 291 Query 424 TACCTCGTCTCAGGACTA 441 ||||| |||||| ||||| Sbjct 292 TACCTTGTCTCAAGACTA 309 > Ahg915765 jgi|Araly1|915765|Al_scaffold_0008_516 Length=780 Score = 211 bits (114), Expect = 5e-54 Identities = 202/242 (83%), Gaps = 15/242 (6%) Strand=Plus/Plus Query 211 AAGCTAAGTATTC-T-A-AAGGATGTGAATG---ACAAGTCTTGTGTCACGCGTTGGATA 264 ||||||||||||| | | || || | ||||| |||||||||||||||||||||||||| Sbjct 28 AAGCTAAGTATTCGTAAGAAAGAAGAGAATGATAACAAGTCTTGTGTCACGCGTTGGATA 87 Query 265 GATTTTGTGGCTACGCCTAAACTTAAGGATCTTGATGTTGAGTTTGGTCCTCTG-AAGCG 323 ||||||||||||| | ||||||| || ||||||||||||||| | || | || ||| | Sbjct 88 GATTTTGTGGCTAAGAGTAAACTTCAGCATCTTGATGTTGAGTGTCTTCTT-TGGAAGAG 146 Query 324 TGAGTGTTTGGAAGTGATGCC-TGTAAGCCTCTATATCT-GTCAGACACTCCTTTACTTA 381 |||| |||||||||||||||| | ||||||||||||| | || |||| || ||||||||| Sbjct 147 TGAGAGTTTGGAAGTGATGCCAT-TAAGCCTCTATAT-TAGTAAGACGCTTCTTTACTTA 204 Query 382 AGACTCCATCG-GTATTGTTTGGTAGT-TTCGAGTTTGTTTCATTACCTCGTCTCAGGAC 439 ||||||||| | ||| |||| |||| | || |||| | ||||||||||| |||||| ||| Sbjct 205 AGACTCCATGGAGTAATGTTAGGTAATGTT-GAGTCTATTTCATTACCTTGTCTCAAGAC 263 Query 440 TA 441 || Sbjct 264 TA 265 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26037952311 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5