BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22730.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894141 jgi|Araly1|894141|Al_scaffold_0006_2137 597 9e-170
> Ahg894141 jgi|Araly1|894141|Al_scaffold_0006_2137
Length=1779
Score = 597 bits (323), Expect = 9e-170
Identities = 407/448 (91%), Gaps = 4/448 (1%)
Strand=Plus/Plus
Query 772 CTATGCGTTTAGAAGAAAATGTATATGCCAATGATG-TGGTTCTAGAGTCACTTATCTCG 830
||||||||||||||||||||||||| |||||||||| || ||| |||||||||||||||
Sbjct 104 CTATGCGTTTAGAAGAAAATGTATACGCCAATGATGCAGG-TCTGGAGTCACTTATCTCG 162
Query 831 TCTTGCCCAGTTCTCAAAGATTTGATCATTCTTAGAATGTTTGAAGATAACGTAAAGGTC 890
||||||||||||||| ||||||||| ||||||||||||| | ||||| ||| ||||||||
Sbjct 163 TCTTGCCCAGTTCTCGAAGATTTGAGCATTCTTAGAATGGTAGAAGACAACATAAAGGTC 222
Query 891 CTACGAGTGCACTCTCTGACACTAACCAGTCTTAATATAGA-TTTTAATTTTGGGGAGGG 949
||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||| |||
Sbjct 223 CTACGAGTGCACTCTCTGACATTAACCAGTCTTGATATAGACTTTT-ATTTTGGTGAGAA 281
Query 950 TGATGACTTCGTTGATGGTTTTGATAAAAAAGTCTCAGGGGTTTTGATTGATGCACCTCG 1009
||||||| | ||||||| |||||||| |||| ||||| ||||||||||||||| |||||
Sbjct 282 TGATGACATGGTTGATGATTTTGATACAAAACACTCAGAGGTTTTGATTGATGCCCCTCG 341
Query 1010 ACTCAAGTATTTGAAATTCCAAGATGATCTATCGGGGAGTAAAATCATAACCAATTCGGG 1069
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 342 ACTCAAGTATTTGAAATTCCAAGATGATCTATCGGAGAGTAAAGTCATAACCAATTCGGG 401
Query 1070 CTCCTTAGCCAAGGTCAATGTTGTTTATGTCTTCAATGAGAATGATTGTGCTGATGTTGT 1129
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 402 TTCCTTAGCCAAGGTCAACATTGTTTATGTCTTTAATGAGAATGATTGTGCTGATGTTGT 461
Query 1130 TGACATACCAAGACGAAATATGGTCCGTAATTTCTTAACCAGTATCTCGGGAGTTAGCGA 1189
||| ||||||| |||||||||||||||||||| || | |||||||||||||||||| ||
Sbjct 462 CGACTTACCAAGGCGAAATATGGTCCGTAATTTTTTTATCAGTATCTCGGGAGTTAGAGA 521
Query 1190 TATGAAGATCTCTCAGCATTTTGTGGAG 1217
||||||||||||| |||||||||||||
Sbjct 522 TATGAAGATCTCTGGGCATTTTGTGGAG 549
Score = 104 bits (56), Expect = 2e-21
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 262 TGAAAGCGAAATACGGCGAACGGTCGCAGGGAACTTACTTCATGGCTGGAGAGGATCTGA 321
|||||||||||||| |||||||| ||| | ||||||||| || ||||||||||||||||
Sbjct 26 TGAAAGCGAAATACCGCGAACGGCCGCCGCTAACTTACTTAATTGCTGGAGAGGATCTGA 85
Query 322 TAAGCAAATTACCTGAT 338
|||||||||||||||||
Sbjct 86 TAAGCAAATTACCTGAT 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5