BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22740.1
Length=2263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489123 jgi|Araly1|489123|fgenesh2_kg.6__2257__AT5G22740.1 3284 0.0
Ahg921402 jgi|Araly1|921402|scaffold_102683.1 351 9e-96
> Ahg489123 jgi|Araly1|489123|fgenesh2_kg.6__2257__AT5G22740.1
Length=2254
Score = 3284 bits (1778), Expect = 0.0
Identities = 2135/2295 (93%), Gaps = 73/2295 (3%)
Strand=Plus/Plus
Query 1 TTAAACCACATttctccttctggctctctctcttcctaagtttcctctctctTTAGAACT 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1 TTAAACCACATTTCTCCTTCTGGCTCTCTCTCTTCCTAAGTTTTCTCTCTCTTTAAAACT 60
Query 61 GTAGAGAGAGAAAAGCCTCCATTTTTCTCAAGGCAAtctctctctctctGCCTCA-TCTC 119
||||||||||||||| |||| |||||||||||||||||||||||||| | ||| || |
Sbjct 61 ATAGAGAGAGAAAAGCTTCCA-TTTTCTCAAGGCAATCTCTCTCTCTC--CATCATTC-C 116
Query 120 ATAAACCCATTACACCAAAACCTCATCGTAGAGAGAGAAACACACCAACCATTGTTACAC 179
||||||||||| | || | | | | || | || ||||||||||||
Sbjct 117 ATAAACCCATT--------A---CA-C--A-A-A-AG-----C-CC-GCCATTGTTACAC 152
Query 180 TCTaagagaagagaagagagaagG-AAAAATGGACGGTGTATCACCAAAGTTTGTGTTGC 238
|| |||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct 153 TCAAAGAGAAGAGAAGAGACAAGGAAAAAATGGAAGGTGTATCACCAAAGTTTGTGTTGC 212
Query 239 CGGAGACATTCGACGGCGTGAGGATGGAGATCACAGGCCAACTAGGCATGATCTGGGAGC 298
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 213 CGGAGACATTCGACGGTGTGAGGATGGAGATCACAGGGCAACTAGGCATGATCTGGGAGC 272
Query 299 TTGTAAAAGCACCAGTGATTGTCCCTCTTCTTCAATTAGCTGTTTACATCTGTTTGCTTA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTGTAAAAGCACCAGTGATTGTCCCTCTTCTTCAATTAGCTGTTTACATCTGTTTGCTTA 332
Query 359 TGTCTGTCATGCTTTTATGTGAGAGGGTTTACATGGGAATCGTCATCGTCCTCGTCAAAC 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 333 TGTCTGTCATGCTTTTATGTGAGAGGGTTTACATGGGAATCGTCATCGTCCTTGTCAAAC 392
Query 419 TCTTCTGGAAAAAACCAGACAAACGTTACAAGTTCGAGCCCATTCACGATGATGAAGAGC 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 393 TCTTCTGGAAAAAACCAGACAAACGTTACAAATTCGAGCCCATTCACGATGATGAAGAGC 452
Query 479 TTGGTAGCTCCAATTTCCCCGTCGTCCTCGTACAAATCCCCATGTTCAACGAACGAGAGG 538
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 453 TTGGCAGCTCCAATTTCCCAGTCGTCCTCGTACAAATCCCCATGTTCAACGAACGAGAGG 512
Query 539 TTTATAAGCTATCAATAGGAGCGGCGTGTGGACTTTCCTGGCCGTCCGATCGTCTCGTGA 598
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 513 TTTATAAGCTATCAATAGGAGCGGCGTGTGGACTCTCTTGGCCGTCCGATCGTCTCGTGA 572
Query 599 TTCAAGTGTTAGATGACTCTACAGATCCTACTGTTAAGCAAATGGTGGAAGTGGAGTGTC 658
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
Sbjct 573 TTCAAGTGTTAGATGACTCAACAGATCCTACTGTTAAGCAAATGGTGGAAATGGAGTGCC 632
Query 659 AAAGATGGGCAAGTAAAGGAATCAATATTAGGTATCAAATAAGAGAGAATAGAGTTGGTT 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 633 AAAGATGGGCAAGTAAAGGAATCAATATTAGGTATCAAATAAGAGAAAATAGAGTTGGTT 692
Query 719 ACAAAGCCGGTGCTTTAAAGGAAGGACTCAAACGTAGTTATGTCAAGCATTGCGAGTATG 778
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 693 ACAAAGCCGGTGCTTTAAAGGAAGGACTCAAACGTAGTTATGTCAAACATTGCGAGTATG 752
Query 779 TTGTCATCTTCGACGCCGATTTTCAGCCCGAACCTGATTTTCTTCGCCGTAGCATTCCTT 838
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 753 TTGTCATCTTCGACGCCGATTTTCAGCCGGAACCGGATTTTCTTCGCCGTAGCATTCCTT 812
Query 839 TCCTCATGCACAATCCCAACATTGCCTTGGTTCAGGCTCGATGGCGGTTCGTAAATTCTG 898
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 813 TTCTCATGCACAATCCCAACATTGCCTTGGTTCAGGCCCGATGGCGGTTCGTAAATTCTG 872
Query 899 ATGAGTGCTTATTGACGAGAATGCAAGAAATGTCATTGGATTACCATTTCACTGTTGAGC 958
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 873 ATGAGTGCTTATTGACAAGGATGCAAGAAATGTCGTTGGATTACCATTTCACTGTTGAGC 932
Query 959 AAGAAGTGGGTTCATCAACACATGCTTTTTTCGGCTTCAACGGAACCGCCGGAATATGGA 1018
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 933 AAGAAGTCGGTTCATCGACACATGCTTTTTTCGGCTTCAACGGAACCGCCGGAATCTGGA 992
Query 1019 GAATAGCGGCGATAAATGAAGCTGGTGGGTGGAAAGATCGGACCACCGTGGAAGATATGG 1078
|||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||
Sbjct 993 GAATAGCGGCGATAAATGAAGCCGGCGGGTGGAAAGATAGGACCACCGTGGAAGATATGG 1052
Query 1079 ATCTCGCCGTCCGAGCAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGG 1138
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 ATCTCGCCGTCCGAGCTAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGG 1112
Query 1139 TGAAAAGTGAGCTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGATGGTCTT 1198
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TGAAAAGTGAACTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGATGGTCTT 1172
Query 1199 GTGGACCTGCAAATCTCTTTAGGAAAATGGTTATGGAGATCGTAAGAAACAAGAAAGTGA 1258
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1173 GTGGACCTGCAAATCTCTTTAGGAAAATGGTTATGGAGATCATAAGAAACAAGAAAGTGA 1232
Query 1259 GATTCTGGAAGAAAGTGTACGTGATATACAGCTTCTTCTTTGTGAGGAAAATCATTGCAC 1318
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1233 GATTCTGGAAGAAAGTGTATGTGATCTACAGCTTCTTCTTTGTGAGGAAAATCATTGCAC 1292
Query 1319 ATTGGGTCACATTTTGTTTCTACTGCGTTGTTCTTCCTCTCACAATTCTCGTCCCGGAGG 1378
|||||||||||||||||||||||||||||||||||||||| || || |||||||| || |
Sbjct 1293 ATTGGGTCACATTTTGTTTCTACTGCGTTGTTCTTCCTCTTACCATCCTCGTCCCCGAAG 1352
Query 1379 TTAAAGTTCCGATTTGGGGTTCGGTTTATATCCCATCCATCATCACTATCCTCAATTCCG 1438
||||||||||||||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct 1353 TTAAAGTTCCGATTTGGGGCTCCGTTTATATCCCTTCCATCATCACTATCCTCAACTCCG 1412
Query 1439 TCGGTACTCCAAGGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGT 1498
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1413 TCGGTACTCCAAGGTCGATTCATCTGCTGTTCTATTGGATTCTATTTGAGAATGTGATGT 1472
Query 1499 CGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCTAACGAGT 1558
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 1473 CGCTGCACCGGACAAAGGCCACTCTCATTGGTCTCTTTGAGGCTGGAAGGGCTAACGAAT 1532
Query 1559 GGGTAGTGACTGCTAAGCTTGGAAGCGGTCAGAGCGCTAAAGGAAACACTAAAGGGATCA 1618
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 1533 GGGTCGTGACTGCTAAGCTTGGAAGCGGTCAGAGTGCTAAAGGAAACACAAAAGGGCTCA 1592
Query 1619 AAAGGTTCCCAAGAATCTTCAAATTGCCTGATCGATTGAATACATTGGAGCTTGGATTTG 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 AAAGGTTCCCAAGAATCTTCAAATTGCCTGATCGATTGAATACATTGGAGCTTGGATTTG 1652
Query 1679 CGGCTTTCTTGTTCGTGTGCGGATGCTATGACTTTGTGCACGGGAAGAACAATTACTTCA 1738
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 CGGCGTTCTTGTTCGTGTGTGGATGCTATGACTTTGTGCACGGGAAGAACAATTACTTCA 1712
Query 1739 TCTACCTGTTTCTTCAGACAATGTCTTTCTTCATCAGTGGGCTGGGCTGGATCGGGACTT 1798
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1713 TCTACTTGTTTCTTCAGACAATGTCTTTCTTCATCAGTGGGCTTGGCTGGATCGGGACTT 1772
Query 1799 ATGTCCCGAGTTAGTAG--TTGTGTTGTTTCAGAGAGAAAAGAGAATGTTATTAATTTT- 1855
||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||
Sbjct 1773 ATGTCCCGAGTTAGTAGAGTTGTGTTGTTACAGGGAGAAAAGAGAAGGTTATTAATTTTT 1832
Query 1856 CTTGAGAAATAAAGACAATTTTCATTGAAATGACAAAGGAAAATTGATAGGGGAGATAGA 1915
|| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 1833 CTGGAGAAATAAAGACAATTTT-A---AA-TGACAAAGGAAAATTGATAGGGGAGATAGA 1887
Query 1916 GACGTACCGGTAACAACAAGTAGGAAGAAAGGAGAAGACTTTTATCAAA-GACCAGGAAA 1974
|||||||||||||||| |||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1888 GACGTACCGGTAACAA---GTAGGAAGAAAGGAGA---CTTTTATCAAAAGACAAGGAAA 1941
Query 1975 GAGGAGAAGCTCC-AAGGGTT-Cttttgatttatttttaatttttctgtgttttattta- 2031
|||||||| |||| ||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1942 GAGGAGAAACTCCGAAGTGTTTCTTTTGATTTATTTTCAATTTTTCTGTGTTTTATTTAC 2001
Query 2032 ---TAT--AGCTATGGGATTT----GTGATTCAGTTGTTGTGAGAttttaattttcgttc 2082
||| ||||||||||||| ||||||||||| |||||||| || |||||| ||||
Sbjct 2002 AAATATTTAGCTATGGGATTTATTTGTGATTCAGTTATTGTGAGACTTCAATTTTTGTTC 2061
Query 2083 tttgttttt-tattt-t------ggtttttgggtattttttcgttttgaaagtgttagtc 2134
||| ||||| | ||| | ||||||||||| |||||| |||| |||||||||||
Sbjct 2062 TTTCTTTTTCTTTTTCTTTTCTTGGTTTTTGGGTTTTTTTTT-TTTT-AAAGTGTTAGTT 2119
Query 2135 tttttgtt-tt--gttttt-ATGATTTAGAATTCAAGATTCTGCGTGAGCTACAAGTGTT 2190
||||| || || |||||| ||||||||||||||||| |||||| |||||||||||||||
Sbjct 2120 TTTTTTTTCTTTTGTTTTTTATGATTTAGAATTCAAGGTTCTGCTTGAGCTACAAGTGTT 2179
Query 2191 -AGATTGATGCAAAGGTTCAAAATTCCTTGTTGTCATCAACAAT-TATCCATTTTATAGT 2248
|||||||||||| |||||||||| ||| ||||||||||||| | |||||||||||||||
Sbjct 2180 TAGATTGATGCAAGGGTTCAAAATCCCTAGTTGTCATCAACAGTGTATCCATTTTATAGT 2239
Query 2249 AATTAATTTACAGTC 2263
|||| ||||||||||
Sbjct 2240 AATTGATTTACAGTC 2254
> Ahg921402 jgi|Araly1|921402|scaffold_102683.1
Length=1844
Score = 351 bits (190), Expect = 9e-96
Identities = 806/1095 (74%), Gaps = 76/1095 (7%)
Strand=Plus/Plus
Query 514 ATCCCCATGTTCAACGAACGAGAGGTTTATAAGCTATCAATAGGAGCGGCGTGTGGACTT 573
||||| |||| ||| ||| |||||||| | || | || |||||||| || ||| |||||
Sbjct 535 ATCCCAATGTACAATGAAAAAGAGGTTTGTCAGTTGTCTATAGGAGCAGCATGTAGACTT 594
Query 574 TCCTGGCCGTCCGATCGTCTCG-TGATTCAAG-TGTTAGATGACTCTACAGATCCTA-CT 630
|| ||||| | ||||| | | | ||||||| | || ||||| || |||||||| | ||
Sbjct 595 TCTTGGCCATTGGATCGAAT-GATAATTCAAGTTCTT-GATGATTCCACAGATCC-AGCT 651
Query 631 -GTTAAGCAAATGGTGGAA-GTGGAGTGTC-A-AAGATGGGCAAGTAAAGGAATCAATAT 686
| |||| || |||| ||| | ||| || | | || |||||| || ||||| || || |
Sbjct 652 AG-TAAGGAATTGGT-GAATGCGGAATG-CGATAA-ATGGGCGAGAAAAGGTATAAACA- 706
Query 687 TAGGTATCA-A-ATAAGAGAGAATAGAGTTGGTTACAAAGCCGGTGCTTTAAAGGAAGGA 744
|| | ||| | || |||| || ||| | || |||||||| || || ||||||| ||||
Sbjct 707 TA-ATGTCAGAGATTCGAGACAACAGAATCGGATACAAAGCAGGAGCATTAAAGGCAGGA 765
Query 745 CTCAAACGTAGTTATGTCAAGCATTGCGAGTATGTTGTCATCTTCGACGCCGATTTTCAG 804
| | | | ||||| || || ||||||| ||| | ||| ||||| || |||||||||
Sbjct 766 ATGATGCACAACTATGTGAAACAATGCGAGTTTGTCGCCATTTTCGATGCTGATTTTCAG 825
Query 805 CCCGAACCTGATTTTCTTCG-CCGTAGCATTCCTTTCCTCATGCACAATCCCA--ACATT 861
|| || ||||| |||||| | || | ||||||||| || || ||||| ||| | | |
Sbjct 826 CCTGATCCTGACTTTCTT-GAACGAACCATTCCTTTTCTTATTCACAA--CCATGA-AAT 881
Query 862 GC-CT-TGGTTC-AGGCTCGATGGCGGTTCGTAAATTCTGATGAGTGCTTATTGACGAGA 918
| || |||| | | || || ||| ||| || ||| | | ||||||||| |||| |||
Sbjct 882 -CTCTCTGGTCCAATGC-CGTTGGAAGTTTGTGAATGCAAACGAGTGCTTAATGACAAGA 939
Query 919 ATGCAAGAAATGTCATTGGATTACCATTTCACT-GTTGAGCAAGAAGT-GGGTTCATCAA 976
|||||||| |||||| | | |||||||| | | |||||||||| | || || ||||
Sbjct 940 ATGCAAGAGATGTCACTAAACTACCATTT-TGTGGCTGAGCAAGAA-TCTGGATCGTCAA 997
Query 977 -CACATGCTTT-TTTCGGCTTCAACGGAACCGCCGGAATATGGAGAATAGCGGCGATAAA 1034
| |||||||| ||| || ||||| |||||||| || | |||||||| || || ||||
Sbjct 998 TC-CATGCTTTCTTT-GGATTCAATGGAACCGCGGGTGTTTGGAGAATCGCAGCTTTAAA 1055
Query 1035 TGAAGCTGGTGGG-TGGAAAGATCGGACCACCGTGGAAGATATGGATCTCGCCGTCCGAG 1093
|||||||| ||| ||||||||||| || || || ||||| |||||| | || || |||
Sbjct 1056 CGAAGCTGG-GGGATGGAAAGATCGAACAACTGTAGAAGACATGGATTTAGCTGTAAGAG 1114
Query 1094 CAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTC-AGGTGAAAAGTGAGCTT 1152
| |||||| || ||||||||| |||| || ||| | || ||||||||| ||| ||
Sbjct 1115 CTTGTCTTCATGGTTGGAAATTTGTCTATGTCCATGA-CGTCGAGGTGAAAAATGA-ATT 1172
Query 1153 -CCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGATGGTCTTGTGGACCTGCAAA 1211
|||||||| || | ||| | ||| ||||||||||||||||||||||||||||| || ||
Sbjct 1173 GCCAAGTACATTCAAAGCATACCGGTTTCAGCAACATAGATGGTCTTGTGGACCAGCGAA 1232
Query 1212 TCTCTTTAGGAAAATGGTTATGGAGATCGTA-AGAAACAAGAAAGTGA-GATTCTGGAAG 1269
||| | ||||| ||| ||||| ||| || |||| |||||||||| | ||||||
Sbjct 1233 TCTATGGAGGAAGATGACAATGGAAATCTTACAGAA-CAAGAAAGTGTCGGCG-TGGAAG 1290
Query 1270 AAAGTGTA-CGTGATATACAGCTTCTTCTTTGTGAGGAAAATCATTG--CACAT-TGGGT 1325
||| |||| | | ||||||| |||||||| | ||||| || | | ||||| | |
Sbjct 1291 AAATTGTATC-TCATATACAATTTCTTCTTCATAAGGAAGATTGTAGTACACATCT---T 1346
Query 1326 CACATTTTGT-TTCTACTG-CGTTG-TTCTTCCTCTCACAA-T-T-CTCGTCCCGGAGGT 1379
||||||| || |||||||| | | | || || | | ||| | | || |||| ||| |
Sbjct 1347 CACATTT-GTCTTCTACTGTC-T-GATT-TTAC-CAG-CAACTGTGCTATTCCCTGAGCT 1400
Query 1380 TAAAGTTCCGATTTGGGGTTCGGTTTATATCCCATCC-ATCA-TCACTATCCTCAATTCC 1437
||||||| | |||| | |||||| | || | | | || |||||||||| || |
Sbjct 1401 CCAAGTTCCTAAATGGGCAACTGTTTATTTTCC-TACTA-CAATCACTATCCTTAACGCA 1458
Query 1438 GTCGGTACTCCAAGGTCAATTCATCTGCT-GTTCTATTGGATTCT-ATTCGAGAATGTGA 1495
||| || || | ||| | ||||| || || || |||||| || |||||||||||| |
Sbjct 1459 ATCGCAACACCTCGATCACTCCATCTTCTTGT-CTTTTGGAT-CTTATTCGAGAATGTAA 1516
Query 1496 TGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCTAACG 1555
||||| |||| || ||||| || ||| |||| ||| | | ||||||||| ||| |||||
Sbjct 1517 TGTCGATGCATCGCACAAAAGCGACTTTCATCGGTTTACTAGAGGCAGGACGGGTTAACG 1576
Query 1556 AGTGGGTAGTGACTG 1570
| ||||| || ||||
Sbjct 1577 AATGGGTTGTTACTG 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85207878065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5