BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22740.1 Length=2263 Score E Sequences producing significant alignments: (Bits) Value Ahg489123 jgi|Araly1|489123|fgenesh2_kg.6__2257__AT5G22740.1 3284 0.0 Ahg921402 jgi|Araly1|921402|scaffold_102683.1 351 9e-96 > Ahg489123 jgi|Araly1|489123|fgenesh2_kg.6__2257__AT5G22740.1 Length=2254 Score = 3284 bits (1778), Expect = 0.0 Identities = 2135/2295 (93%), Gaps = 73/2295 (3%) Strand=Plus/Plus Query 1 TTAAACCACATttctccttctggctctctctcttcctaagtttcctctctctTTAGAACT 60 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1 TTAAACCACATTTCTCCTTCTGGCTCTCTCTCTTCCTAAGTTTTCTCTCTCTTTAAAACT 60 Query 61 GTAGAGAGAGAAAAGCCTCCATTTTTCTCAAGGCAAtctctctctctctGCCTCA-TCTC 119 ||||||||||||||| |||| |||||||||||||||||||||||||| | ||| || | Sbjct 61 ATAGAGAGAGAAAAGCTTCCA-TTTTCTCAAGGCAATCTCTCTCTCTC--CATCATTC-C 116 Query 120 ATAAACCCATTACACCAAAACCTCATCGTAGAGAGAGAAACACACCAACCATTGTTACAC 179 ||||||||||| | || | | | | || | || |||||||||||| Sbjct 117 ATAAACCCATT--------A---CA-C--A-A-A-AG-----C-CC-GCCATTGTTACAC 152 Query 180 TCTaagagaagagaagagagaagG-AAAAATGGACGGTGTATCACCAAAGTTTGTGTTGC 238 || |||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| Sbjct 153 TCAAAGAGAAGAGAAGAGACAAGGAAAAAATGGAAGGTGTATCACCAAAGTTTGTGTTGC 212 Query 239 CGGAGACATTCGACGGCGTGAGGATGGAGATCACAGGCCAACTAGGCATGATCTGGGAGC 298 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 213 CGGAGACATTCGACGGTGTGAGGATGGAGATCACAGGGCAACTAGGCATGATCTGGGAGC 272 Query 299 TTGTAAAAGCACCAGTGATTGTCCCTCTTCTTCAATTAGCTGTTTACATCTGTTTGCTTA 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 273 TTGTAAAAGCACCAGTGATTGTCCCTCTTCTTCAATTAGCTGTTTACATCTGTTTGCTTA 332 Query 359 TGTCTGTCATGCTTTTATGTGAGAGGGTTTACATGGGAATCGTCATCGTCCTCGTCAAAC 418 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 333 TGTCTGTCATGCTTTTATGTGAGAGGGTTTACATGGGAATCGTCATCGTCCTTGTCAAAC 392 Query 419 TCTTCTGGAAAAAACCAGACAAACGTTACAAGTTCGAGCCCATTCACGATGATGAAGAGC 478 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 393 TCTTCTGGAAAAAACCAGACAAACGTTACAAATTCGAGCCCATTCACGATGATGAAGAGC 452 Query 479 TTGGTAGCTCCAATTTCCCCGTCGTCCTCGTACAAATCCCCATGTTCAACGAACGAGAGG 538 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 453 TTGGCAGCTCCAATTTCCCAGTCGTCCTCGTACAAATCCCCATGTTCAACGAACGAGAGG 512 Query 539 TTTATAAGCTATCAATAGGAGCGGCGTGTGGACTTTCCTGGCCGTCCGATCGTCTCGTGA 598 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 513 TTTATAAGCTATCAATAGGAGCGGCGTGTGGACTCTCTTGGCCGTCCGATCGTCTCGTGA 572 Query 599 TTCAAGTGTTAGATGACTCTACAGATCCTACTGTTAAGCAAATGGTGGAAGTGGAGTGTC 658 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | Sbjct 573 TTCAAGTGTTAGATGACTCAACAGATCCTACTGTTAAGCAAATGGTGGAAATGGAGTGCC 632 Query 659 AAAGATGGGCAAGTAAAGGAATCAATATTAGGTATCAAATAAGAGAGAATAGAGTTGGTT 718 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 633 AAAGATGGGCAAGTAAAGGAATCAATATTAGGTATCAAATAAGAGAAAATAGAGTTGGTT 692 Query 719 ACAAAGCCGGTGCTTTAAAGGAAGGACTCAAACGTAGTTATGTCAAGCATTGCGAGTATG 778 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 693 ACAAAGCCGGTGCTTTAAAGGAAGGACTCAAACGTAGTTATGTCAAACATTGCGAGTATG 752 Query 779 TTGTCATCTTCGACGCCGATTTTCAGCCCGAACCTGATTTTCTTCGCCGTAGCATTCCTT 838 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 753 TTGTCATCTTCGACGCCGATTTTCAGCCGGAACCGGATTTTCTTCGCCGTAGCATTCCTT 812 Query 839 TCCTCATGCACAATCCCAACATTGCCTTGGTTCAGGCTCGATGGCGGTTCGTAAATTCTG 898 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 813 TTCTCATGCACAATCCCAACATTGCCTTGGTTCAGGCCCGATGGCGGTTCGTAAATTCTG 872 Query 899 ATGAGTGCTTATTGACGAGAATGCAAGAAATGTCATTGGATTACCATTTCACTGTTGAGC 958 |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct 873 ATGAGTGCTTATTGACAAGGATGCAAGAAATGTCGTTGGATTACCATTTCACTGTTGAGC 932 Query 959 AAGAAGTGGGTTCATCAACACATGCTTTTTTCGGCTTCAACGGAACCGCCGGAATATGGA 1018 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 933 AAGAAGTCGGTTCATCGACACATGCTTTTTTCGGCTTCAACGGAACCGCCGGAATCTGGA 992 Query 1019 GAATAGCGGCGATAAATGAAGCTGGTGGGTGGAAAGATCGGACCACCGTGGAAGATATGG 1078 |||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||| Sbjct 993 GAATAGCGGCGATAAATGAAGCCGGCGGGTGGAAAGATAGGACCACCGTGGAAGATATGG 1052 Query 1079 ATCTCGCCGTCCGAGCAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGG 1138 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 ATCTCGCCGTCCGAGCTAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGG 1112 Query 1139 TGAAAAGTGAGCTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGATGGTCTT 1198 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 TGAAAAGTGAACTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGATGGTCTT 1172 Query 1199 GTGGACCTGCAAATCTCTTTAGGAAAATGGTTATGGAGATCGTAAGAAACAAGAAAGTGA 1258 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1173 GTGGACCTGCAAATCTCTTTAGGAAAATGGTTATGGAGATCATAAGAAACAAGAAAGTGA 1232 Query 1259 GATTCTGGAAGAAAGTGTACGTGATATACAGCTTCTTCTTTGTGAGGAAAATCATTGCAC 1318 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 1233 GATTCTGGAAGAAAGTGTATGTGATCTACAGCTTCTTCTTTGTGAGGAAAATCATTGCAC 1292 Query 1319 ATTGGGTCACATTTTGTTTCTACTGCGTTGTTCTTCCTCTCACAATTCTCGTCCCGGAGG 1378 |||||||||||||||||||||||||||||||||||||||| || || |||||||| || | Sbjct 1293 ATTGGGTCACATTTTGTTTCTACTGCGTTGTTCTTCCTCTTACCATCCTCGTCCCCGAAG 1352 Query 1379 TTAAAGTTCCGATTTGGGGTTCGGTTTATATCCCATCCATCATCACTATCCTCAATTCCG 1438 ||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||| Sbjct 1353 TTAAAGTTCCGATTTGGGGCTCCGTTTATATCCCTTCCATCATCACTATCCTCAACTCCG 1412 Query 1439 TCGGTACTCCAAGGTCAATTCATCTGCTGTTCTATTGGATTCTATTCGAGAATGTGATGT 1498 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1413 TCGGTACTCCAAGGTCGATTCATCTGCTGTTCTATTGGATTCTATTTGAGAATGTGATGT 1472 Query 1499 CGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCTAACGAGT 1558 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | Sbjct 1473 CGCTGCACCGGACAAAGGCCACTCTCATTGGTCTCTTTGAGGCTGGAAGGGCTAACGAAT 1532 Query 1559 GGGTAGTGACTGCTAAGCTTGGAAGCGGTCAGAGCGCTAAAGGAAACACTAAAGGGATCA 1618 |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| Sbjct 1533 GGGTCGTGACTGCTAAGCTTGGAAGCGGTCAGAGTGCTAAAGGAAACACAAAAGGGCTCA 1592 Query 1619 AAAGGTTCCCAAGAATCTTCAAATTGCCTGATCGATTGAATACATTGGAGCTTGGATTTG 1678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1593 AAAGGTTCCCAAGAATCTTCAAATTGCCTGATCGATTGAATACATTGGAGCTTGGATTTG 1652 Query 1679 CGGCTTTCTTGTTCGTGTGCGGATGCTATGACTTTGTGCACGGGAAGAACAATTACTTCA 1738 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1653 CGGCGTTCTTGTTCGTGTGTGGATGCTATGACTTTGTGCACGGGAAGAACAATTACTTCA 1712 Query 1739 TCTACCTGTTTCTTCAGACAATGTCTTTCTTCATCAGTGGGCTGGGCTGGATCGGGACTT 1798 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1713 TCTACTTGTTTCTTCAGACAATGTCTTTCTTCATCAGTGGGCTTGGCTGGATCGGGACTT 1772 Query 1799 ATGTCCCGAGTTAGTAG--TTGTGTTGTTTCAGAGAGAAAAGAGAATGTTATTAATTTT- 1855 ||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||| Sbjct 1773 ATGTCCCGAGTTAGTAGAGTTGTGTTGTTACAGGGAGAAAAGAGAAGGTTATTAATTTTT 1832 Query 1856 CTTGAGAAATAAAGACAATTTTCATTGAAATGACAAAGGAAAATTGATAGGGGAGATAGA 1915 || ||||||||||||||||||| | || |||||||||||||||||||||||||||||| Sbjct 1833 CTGGAGAAATAAAGACAATTTT-A---AA-TGACAAAGGAAAATTGATAGGGGAGATAGA 1887 Query 1916 GACGTACCGGTAACAACAAGTAGGAAGAAAGGAGAAGACTTTTATCAAA-GACCAGGAAA 1974 |||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||| Sbjct 1888 GACGTACCGGTAACAA---GTAGGAAGAAAGGAGA---CTTTTATCAAAAGACAAGGAAA 1941 Query 1975 GAGGAGAAGCTCC-AAGGGTT-Cttttgatttatttttaatttttctgtgttttattta- 2031 |||||||| |||| ||| ||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1942 GAGGAGAAACTCCGAAGTGTTTCTTTTGATTTATTTTCAATTTTTCTGTGTTTTATTTAC 2001 Query 2032 ---TAT--AGCTATGGGATTT----GTGATTCAGTTGTTGTGAGAttttaattttcgttc 2082 ||| ||||||||||||| ||||||||||| |||||||| || |||||| |||| Sbjct 2002 AAATATTTAGCTATGGGATTTATTTGTGATTCAGTTATTGTGAGACTTCAATTTTTGTTC 2061 Query 2083 tttgttttt-tattt-t------ggtttttgggtattttttcgttttgaaagtgttagtc 2134 ||| ||||| | ||| | ||||||||||| |||||| |||| ||||||||||| Sbjct 2062 TTTCTTTTTCTTTTTCTTTTCTTGGTTTTTGGGTTTTTTTTT-TTTT-AAAGTGTTAGTT 2119 Query 2135 tttttgtt-tt--gttttt-ATGATTTAGAATTCAAGATTCTGCGTGAGCTACAAGTGTT 2190 ||||| || || |||||| ||||||||||||||||| |||||| ||||||||||||||| Sbjct 2120 TTTTTTTTCTTTTGTTTTTTATGATTTAGAATTCAAGGTTCTGCTTGAGCTACAAGTGTT 2179 Query 2191 -AGATTGATGCAAAGGTTCAAAATTCCTTGTTGTCATCAACAAT-TATCCATTTTATAGT 2248 |||||||||||| |||||||||| ||| ||||||||||||| | ||||||||||||||| Sbjct 2180 TAGATTGATGCAAGGGTTCAAAATCCCTAGTTGTCATCAACAGTGTATCCATTTTATAGT 2239 Query 2249 AATTAATTTACAGTC 2263 |||| |||||||||| Sbjct 2240 AATTGATTTACAGTC 2254 > Ahg921402 jgi|Araly1|921402|scaffold_102683.1 Length=1844 Score = 351 bits (190), Expect = 9e-96 Identities = 806/1095 (74%), Gaps = 76/1095 (7%) Strand=Plus/Plus Query 514 ATCCCCATGTTCAACGAACGAGAGGTTTATAAGCTATCAATAGGAGCGGCGTGTGGACTT 573 ||||| |||| ||| ||| |||||||| | || | || |||||||| || ||| ||||| Sbjct 535 ATCCCAATGTACAATGAAAAAGAGGTTTGTCAGTTGTCTATAGGAGCAGCATGTAGACTT 594 Query 574 TCCTGGCCGTCCGATCGTCTCG-TGATTCAAG-TGTTAGATGACTCTACAGATCCTA-CT 630 || ||||| | ||||| | | | ||||||| | || ||||| || |||||||| | || Sbjct 595 TCTTGGCCATTGGATCGAAT-GATAATTCAAGTTCTT-GATGATTCCACAGATCC-AGCT 651 Query 631 -GTTAAGCAAATGGTGGAA-GTGGAGTGTC-A-AAGATGGGCAAGTAAAGGAATCAATAT 686 | |||| || |||| ||| | ||| || | | || |||||| || ||||| || || | Sbjct 652 AG-TAAGGAATTGGT-GAATGCGGAATG-CGATAA-ATGGGCGAGAAAAGGTATAAACA- 706 Query 687 TAGGTATCA-A-ATAAGAGAGAATAGAGTTGGTTACAAAGCCGGTGCTTTAAAGGAAGGA 744 || | ||| | || |||| || ||| | || |||||||| || || ||||||| |||| Sbjct 707 TA-ATGTCAGAGATTCGAGACAACAGAATCGGATACAAAGCAGGAGCATTAAAGGCAGGA 765 Query 745 CTCAAACGTAGTTATGTCAAGCATTGCGAGTATGTTGTCATCTTCGACGCCGATTTTCAG 804 | | | | ||||| || || ||||||| ||| | ||| ||||| || ||||||||| Sbjct 766 ATGATGCACAACTATGTGAAACAATGCGAGTTTGTCGCCATTTTCGATGCTGATTTTCAG 825 Query 805 CCCGAACCTGATTTTCTTCG-CCGTAGCATTCCTTTCCTCATGCACAATCCCA--ACATT 861 || || ||||| |||||| | || | ||||||||| || || ||||| ||| | | | Sbjct 826 CCTGATCCTGACTTTCTT-GAACGAACCATTCCTTTTCTTATTCACAA--CCATGA-AAT 881 Query 862 GC-CT-TGGTTC-AGGCTCGATGGCGGTTCGTAAATTCTGATGAGTGCTTATTGACGAGA 918 | || |||| | | || || ||| ||| || ||| | | ||||||||| |||| ||| Sbjct 882 -CTCTCTGGTCCAATGC-CGTTGGAAGTTTGTGAATGCAAACGAGTGCTTAATGACAAGA 939 Query 919 ATGCAAGAAATGTCATTGGATTACCATTTCACT-GTTGAGCAAGAAGT-GGGTTCATCAA 976 |||||||| |||||| | | |||||||| | | |||||||||| | || || |||| Sbjct 940 ATGCAAGAGATGTCACTAAACTACCATTT-TGTGGCTGAGCAAGAA-TCTGGATCGTCAA 997 Query 977 -CACATGCTTT-TTTCGGCTTCAACGGAACCGCCGGAATATGGAGAATAGCGGCGATAAA 1034 | |||||||| ||| || ||||| |||||||| || | |||||||| || || |||| Sbjct 998 TC-CATGCTTTCTTT-GGATTCAATGGAACCGCGGGTGTTTGGAGAATCGCAGCTTTAAA 1055 Query 1035 TGAAGCTGGTGGG-TGGAAAGATCGGACCACCGTGGAAGATATGGATCTCGCCGTCCGAG 1093 |||||||| ||| ||||||||||| || || || ||||| |||||| | || || ||| Sbjct 1056 CGAAGCTGG-GGGATGGAAAGATCGAACAACTGTAGAAGACATGGATTTAGCTGTAAGAG 1114 Query 1094 CAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTC-AGGTGAAAAGTGAGCTT 1152 | |||||| || ||||||||| |||| || ||| | || ||||||||| ||| || Sbjct 1115 CTTGTCTTCATGGTTGGAAATTTGTCTATGTCCATGA-CGTCGAGGTGAAAAATGA-ATT 1172 Query 1153 -CCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATAGATGGTCTTGTGGACCTGCAAA 1211 |||||||| || | ||| | ||| ||||||||||||||||||||||||||||| || || Sbjct 1173 GCCAAGTACATTCAAAGCATACCGGTTTCAGCAACATAGATGGTCTTGTGGACCAGCGAA 1232 Query 1212 TCTCTTTAGGAAAATGGTTATGGAGATCGTA-AGAAACAAGAAAGTGA-GATTCTGGAAG 1269 ||| | ||||| ||| ||||| ||| || |||| |||||||||| | |||||| Sbjct 1233 TCTATGGAGGAAGATGACAATGGAAATCTTACAGAA-CAAGAAAGTGTCGGCG-TGGAAG 1290 Query 1270 AAAGTGTA-CGTGATATACAGCTTCTTCTTTGTGAGGAAAATCATTG--CACAT-TGGGT 1325 ||| |||| | | ||||||| |||||||| | ||||| || | | ||||| | | Sbjct 1291 AAATTGTATC-TCATATACAATTTCTTCTTCATAAGGAAGATTGTAGTACACATCT---T 1346 Query 1326 CACATTTTGT-TTCTACTG-CGTTG-TTCTTCCTCTCACAA-T-T-CTCGTCCCGGAGGT 1379 ||||||| || |||||||| | | | || || | | ||| | | || |||| ||| | Sbjct 1347 CACATTT-GTCTTCTACTGTC-T-GATT-TTAC-CAG-CAACTGTGCTATTCCCTGAGCT 1400 Query 1380 TAAAGTTCCGATTTGGGGTTCGGTTTATATCCCATCC-ATCA-TCACTATCCTCAATTCC 1437 ||||||| | |||| | |||||| | || | | | || |||||||||| || | Sbjct 1401 CCAAGTTCCTAAATGGGCAACTGTTTATTTTCC-TACTA-CAATCACTATCCTTAACGCA 1458 Query 1438 GTCGGTACTCCAAGGTCAATTCATCTGCT-GTTCTATTGGATTCT-ATTCGAGAATGTGA 1495 ||| || || | ||| | ||||| || || || |||||| || |||||||||||| | Sbjct 1459 ATCGCAACACCTCGATCACTCCATCTTCTTGT-CTTTTGGAT-CTTATTCGAGAATGTAA 1516 Query 1496 TGTCGCTGCACCGGACAAAGGCCACTCTCATTGGTCTGTTTGAGGCAGGAAGGGCTAACG 1555 ||||| |||| || ||||| || ||| |||| ||| | | ||||||||| ||| ||||| Sbjct 1517 TGTCGATGCATCGCACAAAAGCGACTTTCATCGGTTTACTAGAGGCAGGACGGGTTAACG 1576 Query 1556 AGTGGGTAGTGACTG 1570 | ||||| || |||| Sbjct 1577 AATGGGTTGTTACTG 1591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85207878065 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5