BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22790.1
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326573 jgi|Araly1|326573|fgenesh1_pm.C_scaffold_6001793 1953 0.0
> Ahg326573 jgi|Araly1|326573|fgenesh1_pm.C_scaffold_6001793
Length=1305
Score = 1953 bits (1057), Expect = 0.0
Identities = 1232/1314 (94%), Gaps = 21/1314 (2%)
Strand=Plus/Plus
Query 118 ATGTCTATTTCCCTAAAAATTTCCCACATTTCAA-GTTTCTCCAACGATGGGTTCAATA- 175
|||||||| ||||| ||||||||||||||||||| ||| |||||||||||||| ||||
Sbjct 1 ATGTCTATATCCCTTAAAATTTCCCACATTTCAACATTT-TCCAACGATGGGTTTAATAG 59
Query 176 -GT---G-T---AAAGCAATGCAGAGT--GAGTCAAAGGTTTGAAATTAGATCGGTTTGT 225
|| | | ||||||||||||| | | ||||||||||||||||| | ||| |||||
Sbjct 60 CGTAGAGCTGCGAAAGCAATGCAGA-TCCG-GTCAAAGGTTTGAAATTGGGTCGATTTGT 117
Query 226 TTCCGTAGAAGCCCTGGTGTTGAATCTAGACGGATCCATTTAAATTCGGACTTGTCTTCT 285
||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 118 TTCCGTAGAAGTTCTGGTTTTGAATCTAGACGGATCCATTTGAATTCGGACTTGTCTTCT 177
Query 286 CGGAATTTGAGAAACCGATGTGTAGGATCGGATGTGGTTACGGGTGAAATATCCGGTAGA 345
||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||
Sbjct 178 CGGAATTTGAGAAACCGATGTGTGGGATCGGATGTGGTGGCGGGTGAAATTTCCGGTAGA 237
Query 346 TCGATACCGGATTGGGCTTATAGTGGCGTAAAAGATGAGACTTTAAGCGATTTGGAGCCG 405
||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 238 TCGGTACCGGATTGGGCTTATAGCGGCTTAAAGGATGAGACTTTAAGCGATTTGGAGCCG 297
Query 406 GAACTTGATGATGGTGATGGCGGCGATGAGAATGGGAACAACGACggtggtggaaatggt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAACTTGATGATGGTGATGGCGGCGATGAGAATGGGAACAACGACGGTGGTGGAAATGGT 357
Query 466 ggtaatggagacggaggaggaggaggtggagatggagaaggagatgatggagaggatgaa 525
|| | | ||||||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 358 GG---T--A-ACGGAGGTGGAGGAGGAGGAGGTGGAGAAGGAGATGATGGAGAGGATGAA 411
Query 526 gcagataaagctgaggagaaggagTTTGGTCCGATTTTGAAGTTTGAAGAAGTTATGAAA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GCAGATAAAGCTGAGGAGAAGGAGTTTGGTCCGATTTTGAAGTTTGAAGAAGTTATGAAA 471
Query 586 GAGACAGAACGTAGAGGGATTACGTTACCGGAGGATATGTTGGAAGCGGCTAAATCCGTG 645
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 472 GAGACAGAACGTAGAGGGATTACGTTACCGGAGGATATGTTGGAAGCTGCTAAATCCGTG 531
Query 646 GGGATTCGAAAACTGTTCCTTCTTCGTTACCTTGATCTACAGGGTTCTGTTTGGCCGCTT 705
||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 532 GGGCTTCGGAAACTGTTCCTTCTTCGTTACCTCGATCTACAGGGTTCTGTTTGGCCACTT 591
Query 706 GGGTTTCTGATGAGATCATGTGCGATGCTTCGAAATAGAATGCTTGCAGATCCTTCATTT 765
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 592 GGGTTTCTTATGAGATCATGTGCGATGCTTCGAAATAGAATGCTCGCAGATCCTTCATTT 651
Query 766 CTCTTCAAAGTTGGAACCGAGGTAGCCATAGACTCTTGCTGTGCAACTTTTGCAGAAGTA 825
|| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 652 CTTTTCAAAGTTGGAACCGAGATAGCCATAGACTCTTGCTGTGCAACTTTTGCTGAAGTA 711
Query 826 CAGAAGAGAGGGGAAGATTTCTGGTCAGAGTTTGAGTTATATGCTGCTGATCTTTTAGTT 885
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 712 CAAAAGAGAGGGGAAGATTTCTGGTCAGAGTTTGAGTTGTATGCGGCTGATCTTTTGGTT 771
Query 886 GGTCTTGTGGTTGATGTTGCCTTGGTTGGACTTTTGGCTCCTTATGCACGTATCGGGAAG 945
|||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||
Sbjct 772 GGTCTTGTAGTTGATGTTGCTTTGGTTGGACTATTGGCTCCCTATGCACGTATTGGGAAG 831
Query 946 CCGTCTGTGGCATCAACAGGTTTATTCAAGGATCTTAAACGTGCTTGTGCATCCCTTCCT 1005
|| | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 832 CCATTTGTGGCATCAACAGGTTTATTTAAGGACCTTAAACGTGCTTGTGCATCCCTTCCT 891
Query 1006 AGCAGTGTTTTTGAAGCAGAAAGACCGGGTTGTAAATTCTCAGTTAACCAGCGGATTGCA 1065
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 892 AGCAGTGTTTTTGAAGCTGAAAGACCGGGTTGTAAATTCTCAGTTAACCAGCGCATTGCA 951
Query 1066 ACATTCTTCTACAAGGGCCTCTTGTATGGGTCGGTTGGATTCGGCTGCGGCCTCATTGGT 1125
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 952 ACTTTCTTCTACAAGGGCCTCTTGTATGGGTCGGTTGGATTCGGCTGTGGCCTCATTGGT 1011
Query 1126 CAGGGAATTGCAAATCTGATCATGACAGCAAAACGGAGTGTGAAGAAATCAGAGGAAGAC 1185
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1012 CAGGGAATTGCAAATCTGATCATGACGGCAAAACGGAGTGTGAAGAAATCAGAGGAAGAC 1071
Query 1186 GTCCCTATTCCACCTCTTTTCGAAAGCGCTGCTCTCTGGGGTGTGTTCCTCGGCTTATCT 1245
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1072 GTCCCTATTCCACCTCTTTTTGAAAGCGCTGCTCTCTGGGGTGTGTTCCTCGGCATATCT 1131
Query 1246 TCCAATGCGCGTTACCAAATCATCAACGGCCTCGAACGCGTCGTGGAAGGTTCTACAGCG 1305
|||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 1132 TCCAATGCACGTTACCAAATCATCAACGGCCTCGAGCGCGTCGTAGAAGGTTCAACAGCG 1191
Query 1306 GCCAAACGTATCCCTGTGGTCGCTATGGCATTCACGGTGGGAGTCCGGTTTGCTAACAAT 1365
|||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1192 GCCAAACGCATTCCTGTGGTCGCCATGGCATTCACGGTGGGAGTCCGGTTTGCTAACAAT 1251
Query 1366 GTGTATGGCGGTATGCAATTTGTAGATTGGGCTAAATTGTCCGGCGTTCAGTAA 1419
||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1252 GTGTATGGCGGTATGCAATTTGTGGATTGGGCTAAATTATCCGGCGTTCAGTAA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62544182290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5