BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22791.2 Length=1198 Score E Sequences producing significant alignments: (Bits) Value Ahg894150 jgi|Araly1|894150|Al_scaffold_0006_2146 564 6e-160 Ahg941786 jgi|Araly1|941786|scaffold_602330.1 525 3e-148 Ahg894149 jgi|Araly1|894149|Al_scaffold_0006_2145 348 6e-95 Ahg489131 jgi|Araly1|489131|fgenesh2_kg.6__2265__AT5G22792.1 108 1e-22 Ahg941784 jgi|Araly1|941784|scaffold_602328.1 95.3 9e-19 > Ahg894150 jgi|Araly1|894150|Al_scaffold_0006_2146 Length=801 Score = 564 bits (305), Expect = 6e-160 Identities = 401/447 (90%), Gaps = 7/447 (2%) Strand=Plus/Plus Query 52 ATGGAAGATTCACAACTTTCTCCCTCACGTAACCTAGATCAAGCCGGAAACTCCTCAACA 111 |||||||||||||||| |||||| ||| |||||||| || | |||||||||||| ||| | Sbjct 283 ATGGAAGATTCACAACCTTCTCCGTCAAGTAACCTAAATGACGCCGGAAACTCCACAAAA 342 Query 112 AACATTCCTTTTGATCTCACATTAGAGATAGTCTCGAGACTTCCGGC-AAAACCTATAAT 170 ||||| || |||||||| || ||||||||| |||| | ||||||||| ||| || | || Sbjct 343 AACATCCCATTTGATCTAACCTTAGAGATACTCTCTAAACTTCCGGCGAAATCC-CTCAT 401 Query 171 CCGGTTCCAAGCCGTGTCAAAGCTCTGGTTCTCTACCATCCGCAGTAAAAATTTCACCGA 230 ||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||| || Sbjct 402 CCGTTTCCAAGCCGTGTCAAAGCTCTGGTTCTCAATTATCCGCAGTAAAGATTTCACTGA 461 Query 231 CTCGTTCCTGACTAGGTCAAAGACTCGTCCTCGTCTCTTTTTCACCTTTAAACACTTCGA 290 ||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| Sbjct 462 CTCGTTCCTGACTAGGTCAAAGACTCGTCCTCGTCTCCTTTTCACCTTCAAGCACTTCGA 521 Query 291 TTCCCGGAAACGTTTCATCTTCTCAGCTCCTGAACGCGACAACAATGACAAATCCTCCAC 350 |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 522 TTCCCGAAAACGTTTCATCTTCTCAGCTCCTGAACACGACAACAATGACAAATCCTCTAC 581 Query 351 AGTTGTCGCCAGACACGACATGACGATCTCGGATGTCG-C--CTACATCAGATCTCTCCC 407 |||||||||||||||||||||||||||||| ||| ||| | |||||||||||||| ||| Sbjct 582 AGTTGTCGCCAGACACGACATGACGATCTCTGATCTCGTCTACTACATCAGATCTCGCCC 641 Query 408 CGTCAACGGTTT-GTTTTGCTACACGCGTGGTGATTCGATCGCGGTTTGTAATCCCACCA 466 ||| |||||||| || | ||| ||||||||||||||||||||||||||||||||| |||| Sbjct 642 CGTGAACGGTTTCGTCT-GCTGCACGCGTGGTGATTCGATCGCGGTTTGTAATCCAACCA 700 Query 467 CTAGACAAATAGTTAAATTGCCAGATG 493 ||||||||||||| ||||| ||||||| Sbjct 701 CTAGACAAATAGTGAAATTTCCAGATG 727 > Ahg941786 jgi|Araly1|941786|scaffold_602330.1 Length=1223 Score = 525 bits (284), Expect = 3e-148 Identities = 404/460 (88%), Gaps = 16/460 (3%) Strand=Plus/Plus Query 45 AGCAGCTATGGAAGATTCAC-AACTTTCTCCCTCACGTAACCTAGATCAAGCCGGAAACT 103 ||| || ||||||||||||| ||| |||||||||| ||||||||||| | |||||||||| Sbjct 15 AGCCGCCATGGAAGATTCACAAAC-TTCTCCCTCAAGTAACCTAGATGACGCCGGAAACT 73 Query 104 CCTCAACAAACATTCCTTTTGATCTCACATTAGAGATAGTCTCGAGACTTCCGGC-AAAA 162 || || ||||||||||| |||||||||| ||||||||| |||| ||||||||||| ||| Sbjct 74 CCACACCAAACATTCCTCTTGATCTCACCTTAGAGATACTCTCTAGACTTCCGGCGAAAT 133 Query 163 CCTATAATCCGGTTCCAAGCCGTGTCAAAGCTCTGGTTCTCTACCATCCGCAGTAAAAAT 222 || | |||||||||||||||||||| ||| |||||||||| | ||||||||||||| || Sbjct 134 CC-CTCATCCGGTTCCAAGCCGTGTCTAAGTTCTGGTTCTCAATCATCCGCAGTAAAGAT 192 Query 223 TTCACCGACTCGTTCCTGACTAGGTCAAAGACTCGTCCTCGTCTCTTTTTCACCTTTAA- 281 ||| |||||||||||||||||||||||||||||| |||||| || |||| ||||| || Sbjct 193 TTCGTCGACTCGTTCCTGACTAGGTCAAAGACTCGACCTCGTTTCCTTTTAACCTTCAAG 252 Query 282 ACACTTCGATTCCCGGAAACGTTTCATCTTCTCAGCTCCTGAACGCGACAACAATGACAA 341 | |||||||||||||||||||||||||||||||||||||||||| | | || |||||||| Sbjct 253 A-ACTTCGATTCCCGGAAACGTTTCATCTTCTCAGCTCCTGAACACCAAAAAAATGACAA 311 Query 342 ATCCTCCACAGTTGTCGCCAGACACGACATGACGATCTCGGATG-TCGC--CTAC-A--T 395 ||||||||||||| ||||||||||||||||||||||||||| | ||| |||| | | Sbjct 312 ATCCTCCACAGTTTTCGCCAGACACGACATGACGATCTCGGCCGATCGGGTCTACCACAT 371 Query 396 CAGATCTC-TCCCCGTCAACGGTTT-GTTTTGCTACACGCGTGGTGATTCGATCGCGGTT 453 ||||| || |||| || |||||||| || | ||| ||||||||||||||||||||||||| Sbjct 372 CAGATGTCGTCCC-GTGAACGGTTTCGTCT-GCTGCACGCGTGGTGATTCGATCGCGGTT 429 Query 454 TGTAATCCCACCACTAGACAAATAGTTAAATTGCCAGATG 493 |||||||| ||||||||||||||||| ||||||||||||| Sbjct 430 TGTAATCCAACCACTAGACAAATAGTGAAATTGCCAGATG 469 > Ahg894149 jgi|Araly1|894149|Al_scaffold_0006_2145 Length=528 Score = 348 bits (188), Expect = 6e-95 Identities = 238/262 (91%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 860 ATTTGTTTGAAAAAGAGAGATCTTTGTGCACCGGAAAGATTCATACGGGCGAGGTTATGA 919 |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| | Sbjct 269 ATTTGTTTGAGAAAGAGAGATCTTTGTGCACCGGACAGATTCATACCGGCGAGGTTATAA 328 Query 920 TTGTTTCCACACCTGCGAGGTTAAAGTCATATATGC-CATTTTTTGTTAACTATTGTGAT 978 ||||||||| ||||||||||||| |||||| || || | |||| |||| ||||||||||| Sbjct 329 TTGTTTCCAGACCTGCGAGGTTAGAGTCATCTAAGCTC-TTTTGTGTTTACTATTGTGAT 387 Query 979 ATAACTAGGGA-GAGTATTAGAAGATGTGAGATTGATGGAATTGCGGATTATGAGTTTAG 1037 || || ||||| || ||| ||||| |||||||||||||| || ||||||||||||||||| Sbjct 388 ATGACCAGGGAGGA-TATCAGAAGGTGTGAGATTGATGGTATCGCGGATTATGAGTTTAG 446 Query 1038 ACGTATCCATGGAATTGGTAAGCGTACTCGTGAAATGTTGTGTTTTCCAGGTCACATTGA 1097 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 447 ACGTATCCATGGAATTGGTAAGCGTACTCGTCAATTGTTGTGTTTTCCAGGTCACATTGA 506 Query 1098 GAATATTATCTTCTTTCATTAG 1119 ||||||||| |||||||| ||| Sbjct 507 GAATATTATGTTCTTTCAGTAG 528 Score = 287 bits (155), Expect = 1e-76 Identities = 177/188 (94%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 499 TTCGTTTTCACGCTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGACATAACCAAAGAA 558 ||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||| Sbjct 52 TTCGTTTTCACGCTAAGTTCGGGACAACAAGAGTGGAGAAAGATTGACATAACCGAAGAA 111 Query 559 GAAGATCCTTACCGCCACATGAAAGGTGGGATTTGCATAGATGGTGCTATACACTATGGA 618 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 112 GAAGATCCTTACCGCCACATGAAAGGTGGGATTTGCATAGATGGTGCTATATACTATGGT 171 Query 619 GTTTTGTATAGAAAAATAGCTAGATTTGATGTTAGAACCGAGAAGATTGAGTTCATTCAA 678 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 172 GTTTTGTATAGAAAGATAGCTAGGTTTGATGTTAGAACCGAGAAGATTGAGTTTATTCAA 231 Query 679 GGACCAGA 686 |||||||| Sbjct 232 GGACCAGA 239 > Ahg489131 jgi|Araly1|489131|fgenesh2_kg.6__2265__AT5G22792.1 Length=609 Score = 108 bits (58), Expect = 1e-22 Identities = 145/184 (79%), Gaps = 17/184 (9%) Strand=Plus/Plus Query 499 TTCGTTTTCACGCTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGACA-TAACCAAAGA 557 |||||| |||| || || ||||||||||||||||||||||||||||| | | ||| | Sbjct 115 TTCGTTATCACACTGAGATCTCAACAAAAAGAGTGGAGAAAGATTGA-AGTCACC---G- 169 Query 558 AGAAGATCCTTACCGCCACATGA--AAGGTGGGATTTGCATAGATGGTGCTATACACTAT 615 || ||| ||||| | | ||| |||| || || ||||| |||||||||||| ||||| Sbjct 170 -GA-GATTCTTACA-C-AGATGTCCAAGGAGGAATATGCATCGATGGTGCTATATACTAT 225 Query 616 GGAGTT-TTGTATAGAAAAA-T-AGCTAGATTTGATGTTAGAACCGAGAAGATTG-AGTT 671 |||| | ||| | | |||| | ||||||||||||||||||| ||||||| | || |||| Sbjct 226 GGAGGTGTTGGACACAAAATGTTAGCTAGATTTGATGTTAGATCCGAGAA-AGTGGAGTT 284 Query 672 CATT 675 ||| Sbjct 285 TATT 288 > Ahg941784 jgi|Araly1|941784|scaffold_602328.1 Length=828 Score = 95.3 bits (51), Expect = 9e-19 Identities = 149/194 (77%), Gaps = 15/194 (8%) Strand=Plus/Plus Query 501 CGTTTTCACGCTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGACATAACCAAAGAAGA 560 |||||||||| |||||||||||||||||||||||||||||||||| || ||| |||| | Sbjct 219 CGTTTTCACGTTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGAAATCACCCAAGAT-A 277 Query 561 AGATCCT-TA-C-CGCCACATGAAAGGTGGGATTTGCATAGATGGTGCTATACACTATGG 617 | | | || | || ||||||| || || ||||| |||||||||||| ||||||| Sbjct 278 TTA-CTTATATCACGGTACATGAA-GGA---ATATGCATGGATGGTGCTATATACTATGG 332 Query 618 AGTTTT--G-TATAGAAAAATAGCTAGATTTGATGTTAGAACCGAGAAGATTGAGTTCAT 674 || | | | || || ||| || ||| ||||||||| | |||||| | ||| | || Sbjct 333 AGATGGACGCTC-AGGAA--TAGATATATTCGATGTTAGATCTGAGAAGCTGGAGCTAAT 389 Query 675 TCAAGGACCAGAAG 688 |||| |||||||| Sbjct 390 TCAAATACCAGAAG 403 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44718181641 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5