BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22791.2
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894150 jgi|Araly1|894150|Al_scaffold_0006_2146 564 6e-160
Ahg941786 jgi|Araly1|941786|scaffold_602330.1 525 3e-148
Ahg894149 jgi|Araly1|894149|Al_scaffold_0006_2145 348 6e-95
Ahg489131 jgi|Araly1|489131|fgenesh2_kg.6__2265__AT5G22792.1 108 1e-22
Ahg941784 jgi|Araly1|941784|scaffold_602328.1 95.3 9e-19
> Ahg894150 jgi|Araly1|894150|Al_scaffold_0006_2146
Length=801
Score = 564 bits (305), Expect = 6e-160
Identities = 401/447 (90%), Gaps = 7/447 (2%)
Strand=Plus/Plus
Query 52 ATGGAAGATTCACAACTTTCTCCCTCACGTAACCTAGATCAAGCCGGAAACTCCTCAACA 111
|||||||||||||||| |||||| ||| |||||||| || | |||||||||||| ||| |
Sbjct 283 ATGGAAGATTCACAACCTTCTCCGTCAAGTAACCTAAATGACGCCGGAAACTCCACAAAA 342
Query 112 AACATTCCTTTTGATCTCACATTAGAGATAGTCTCGAGACTTCCGGC-AAAACCTATAAT 170
||||| || |||||||| || ||||||||| |||| | ||||||||| ||| || | ||
Sbjct 343 AACATCCCATTTGATCTAACCTTAGAGATACTCTCTAAACTTCCGGCGAAATCC-CTCAT 401
Query 171 CCGGTTCCAAGCCGTGTCAAAGCTCTGGTTCTCTACCATCCGCAGTAAAAATTTCACCGA 230
||| ||||||||||||||||||||||||||||| | |||||||||||| ||||||| ||
Sbjct 402 CCGTTTCCAAGCCGTGTCAAAGCTCTGGTTCTCAATTATCCGCAGTAAAGATTTCACTGA 461
Query 231 CTCGTTCCTGACTAGGTCAAAGACTCGTCCTCGTCTCTTTTTCACCTTTAAACACTTCGA 290
||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 462 CTCGTTCCTGACTAGGTCAAAGACTCGTCCTCGTCTCCTTTTCACCTTCAAGCACTTCGA 521
Query 291 TTCCCGGAAACGTTTCATCTTCTCAGCTCCTGAACGCGACAACAATGACAAATCCTCCAC 350
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 522 TTCCCGAAAACGTTTCATCTTCTCAGCTCCTGAACACGACAACAATGACAAATCCTCTAC 581
Query 351 AGTTGTCGCCAGACACGACATGACGATCTCGGATGTCG-C--CTACATCAGATCTCTCCC 407
|||||||||||||||||||||||||||||| ||| ||| | |||||||||||||| |||
Sbjct 582 AGTTGTCGCCAGACACGACATGACGATCTCTGATCTCGTCTACTACATCAGATCTCGCCC 641
Query 408 CGTCAACGGTTT-GTTTTGCTACACGCGTGGTGATTCGATCGCGGTTTGTAATCCCACCA 466
||| |||||||| || | ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 642 CGTGAACGGTTTCGTCT-GCTGCACGCGTGGTGATTCGATCGCGGTTTGTAATCCAACCA 700
Query 467 CTAGACAAATAGTTAAATTGCCAGATG 493
||||||||||||| ||||| |||||||
Sbjct 701 CTAGACAAATAGTGAAATTTCCAGATG 727
> Ahg941786 jgi|Araly1|941786|scaffold_602330.1
Length=1223
Score = 525 bits (284), Expect = 3e-148
Identities = 404/460 (88%), Gaps = 16/460 (3%)
Strand=Plus/Plus
Query 45 AGCAGCTATGGAAGATTCAC-AACTTTCTCCCTCACGTAACCTAGATCAAGCCGGAAACT 103
||| || ||||||||||||| ||| |||||||||| ||||||||||| | ||||||||||
Sbjct 15 AGCCGCCATGGAAGATTCACAAAC-TTCTCCCTCAAGTAACCTAGATGACGCCGGAAACT 73
Query 104 CCTCAACAAACATTCCTTTTGATCTCACATTAGAGATAGTCTCGAGACTTCCGGC-AAAA 162
|| || ||||||||||| |||||||||| ||||||||| |||| ||||||||||| |||
Sbjct 74 CCACACCAAACATTCCTCTTGATCTCACCTTAGAGATACTCTCTAGACTTCCGGCGAAAT 133
Query 163 CCTATAATCCGGTTCCAAGCCGTGTCAAAGCTCTGGTTCTCTACCATCCGCAGTAAAAAT 222
|| | |||||||||||||||||||| ||| |||||||||| | ||||||||||||| ||
Sbjct 134 CC-CTCATCCGGTTCCAAGCCGTGTCTAAGTTCTGGTTCTCAATCATCCGCAGTAAAGAT 192
Query 223 TTCACCGACTCGTTCCTGACTAGGTCAAAGACTCGTCCTCGTCTCTTTTTCACCTTTAA- 281
||| |||||||||||||||||||||||||||||| |||||| || |||| ||||| ||
Sbjct 193 TTCGTCGACTCGTTCCTGACTAGGTCAAAGACTCGACCTCGTTTCCTTTTAACCTTCAAG 252
Query 282 ACACTTCGATTCCCGGAAACGTTTCATCTTCTCAGCTCCTGAACGCGACAACAATGACAA 341
| |||||||||||||||||||||||||||||||||||||||||| | | || ||||||||
Sbjct 253 A-ACTTCGATTCCCGGAAACGTTTCATCTTCTCAGCTCCTGAACACCAAAAAAATGACAA 311
Query 342 ATCCTCCACAGTTGTCGCCAGACACGACATGACGATCTCGGATG-TCGC--CTAC-A--T 395
||||||||||||| ||||||||||||||||||||||||||| | ||| |||| | |
Sbjct 312 ATCCTCCACAGTTTTCGCCAGACACGACATGACGATCTCGGCCGATCGGGTCTACCACAT 371
Query 396 CAGATCTC-TCCCCGTCAACGGTTT-GTTTTGCTACACGCGTGGTGATTCGATCGCGGTT 453
||||| || |||| || |||||||| || | ||| |||||||||||||||||||||||||
Sbjct 372 CAGATGTCGTCCC-GTGAACGGTTTCGTCT-GCTGCACGCGTGGTGATTCGATCGCGGTT 429
Query 454 TGTAATCCCACCACTAGACAAATAGTTAAATTGCCAGATG 493
|||||||| ||||||||||||||||| |||||||||||||
Sbjct 430 TGTAATCCAACCACTAGACAAATAGTGAAATTGCCAGATG 469
> Ahg894149 jgi|Araly1|894149|Al_scaffold_0006_2145
Length=528
Score = 348 bits (188), Expect = 6e-95
Identities = 238/262 (91%), Gaps = 4/262 (2%)
Strand=Plus/Plus
Query 860 ATTTGTTTGAAAAAGAGAGATCTTTGTGCACCGGAAAGATTCATACGGGCGAGGTTATGA 919
|||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 269 ATTTGTTTGAGAAAGAGAGATCTTTGTGCACCGGACAGATTCATACCGGCGAGGTTATAA 328
Query 920 TTGTTTCCACACCTGCGAGGTTAAAGTCATATATGC-CATTTTTTGTTAACTATTGTGAT 978
||||||||| ||||||||||||| |||||| || || | |||| |||| |||||||||||
Sbjct 329 TTGTTTCCAGACCTGCGAGGTTAGAGTCATCTAAGCTC-TTTTGTGTTTACTATTGTGAT 387
Query 979 ATAACTAGGGA-GAGTATTAGAAGATGTGAGATTGATGGAATTGCGGATTATGAGTTTAG 1037
|| || ||||| || ||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct 388 ATGACCAGGGAGGA-TATCAGAAGGTGTGAGATTGATGGTATCGCGGATTATGAGTTTAG 446
Query 1038 ACGTATCCATGGAATTGGTAAGCGTACTCGTGAAATGTTGTGTTTTCCAGGTCACATTGA 1097
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 447 ACGTATCCATGGAATTGGTAAGCGTACTCGTCAATTGTTGTGTTTTCCAGGTCACATTGA 506
Query 1098 GAATATTATCTTCTTTCATTAG 1119
||||||||| |||||||| |||
Sbjct 507 GAATATTATGTTCTTTCAGTAG 528
Score = 287 bits (155), Expect = 1e-76
Identities = 177/188 (94%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 499 TTCGTTTTCACGCTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGACATAACCAAAGAA 558
||||||||||||||||| || |||| |||||||||||||||||||||||||| |||||
Sbjct 52 TTCGTTTTCACGCTAAGTTCGGGACAACAAGAGTGGAGAAAGATTGACATAACCGAAGAA 111
Query 559 GAAGATCCTTACCGCCACATGAAAGGTGGGATTTGCATAGATGGTGCTATACACTATGGA 618
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 112 GAAGATCCTTACCGCCACATGAAAGGTGGGATTTGCATAGATGGTGCTATATACTATGGT 171
Query 619 GTTTTGTATAGAAAAATAGCTAGATTTGATGTTAGAACCGAGAAGATTGAGTTCATTCAA 678
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 172 GTTTTGTATAGAAAGATAGCTAGGTTTGATGTTAGAACCGAGAAGATTGAGTTTATTCAA 231
Query 679 GGACCAGA 686
||||||||
Sbjct 232 GGACCAGA 239
> Ahg489131 jgi|Araly1|489131|fgenesh2_kg.6__2265__AT5G22792.1
Length=609
Score = 108 bits (58), Expect = 1e-22
Identities = 145/184 (79%), Gaps = 17/184 (9%)
Strand=Plus/Plus
Query 499 TTCGTTTTCACGCTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGACA-TAACCAAAGA 557
|||||| |||| || || ||||||||||||||||||||||||||||| | | ||| |
Sbjct 115 TTCGTTATCACACTGAGATCTCAACAAAAAGAGTGGAGAAAGATTGA-AGTCACC---G- 169
Query 558 AGAAGATCCTTACCGCCACATGA--AAGGTGGGATTTGCATAGATGGTGCTATACACTAT 615
|| ||| ||||| | | ||| |||| || || ||||| |||||||||||| |||||
Sbjct 170 -GA-GATTCTTACA-C-AGATGTCCAAGGAGGAATATGCATCGATGGTGCTATATACTAT 225
Query 616 GGAGTT-TTGTATAGAAAAA-T-AGCTAGATTTGATGTTAGAACCGAGAAGATTG-AGTT 671
|||| | ||| | | |||| | ||||||||||||||||||| ||||||| | || ||||
Sbjct 226 GGAGGTGTTGGACACAAAATGTTAGCTAGATTTGATGTTAGATCCGAGAA-AGTGGAGTT 284
Query 672 CATT 675
|||
Sbjct 285 TATT 288
> Ahg941784 jgi|Araly1|941784|scaffold_602328.1
Length=828
Score = 95.3 bits (51), Expect = 9e-19
Identities = 149/194 (77%), Gaps = 15/194 (8%)
Strand=Plus/Plus
Query 501 CGTTTTCACGCTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGACATAACCAAAGAAGA 560
|||||||||| |||||||||||||||||||||||||||||||||| || ||| |||| |
Sbjct 219 CGTTTTCACGTTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGAAATCACCCAAGAT-A 277
Query 561 AGATCCT-TA-C-CGCCACATGAAAGGTGGGATTTGCATAGATGGTGCTATACACTATGG 617
| | | || | || ||||||| || || ||||| |||||||||||| |||||||
Sbjct 278 TTA-CTTATATCACGGTACATGAA-GGA---ATATGCATGGATGGTGCTATATACTATGG 332
Query 618 AGTTTT--G-TATAGAAAAATAGCTAGATTTGATGTTAGAACCGAGAAGATTGAGTTCAT 674
|| | | | || || ||| || ||| ||||||||| | |||||| | ||| | ||
Sbjct 333 AGATGGACGCTC-AGGAA--TAGATATATTCGATGTTAGATCTGAGAAGCTGGAGCTAAT 389
Query 675 TCAAGGACCAGAAG 688
|||| ||||||||
Sbjct 390 TCAAATACCAGAAG 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5