BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22792.1
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489131 jgi|Araly1|489131|fgenesh2_kg.6__2265__AT5G22792.1 915 0.0
Ahg941784 jgi|Araly1|941784|scaffold_602328.1 154 7e-37
Ahg915884 jgi|Araly1|915884|Al_scaffold_0008_635 110 2e-23
> Ahg489131 jgi|Araly1|489131|fgenesh2_kg.6__2265__AT5G22792.1
Length=609
Score = 915 bits (495), Expect = 0.0
Identities = 573/610 (94%), Gaps = 8/610 (1%)
Strand=Plus/Plus
Query 7 GACGTCCAGGCACGTCTAGGGTACGATCCAGTGGAAGATCAATACAAAGTGCTGTGTGTG 66
|||||||| || |||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 GACGTCCATGCTCGTCTAGGATACGATCCAGTCGAAGATCAATACAAAGTGTTGTGTGTG 60
Query 67 ATGATGTTCCG-TCGCTACGGCCGCGAT-GG--TAAAGACATAGAACAGGAGCATTTCGT 122
|||||||| || | |||||||||||| | || |||||||||||||||||||||||||||
Sbjct 61 ATGATGTT-CGATGGCTACGGCCGCGGTGGGAATAAAGACATAGAACAGGAGCATTTCGT 119
Query 123 TTTCACTCTGAGATCTCAACAAAAAGAGTGGAGAAAGATTGACGTCACCGGAGATTCTTA 182
| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TATCACACTGAGATCTCAACAAAAAGAGTGGAGAAAGATTGAAGTCACCGGAGATTCTTA 179
Query 183 CACAGATGTCCAAGGAGGAATATGCATCGATGGTGCTATATACTATGGAGGAGTTGGACA 242
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 CACAGATGTCCAAGGAGGAATATGCATCGATGGTGCTATATACTATGGAGGTGTTGGACA 239
Query 243 CAAAATATTAGCTAGATTTGATGTTAGATCCGAGAAAGTGGAGTTTATTAAAACACAGAA 302
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAAAATGTTAGCTAGATTTGATGTTAGATCCGAGAAAGTGGAGTTTATTAAAACACAGAA 299
Query 303 AGACGAAATAGTAAACGTTTATAGTTGGACTTTTATAAATCACCAAGGAAAATTAGGAGG 362
|||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||
Sbjct 300 AGACGATATAGTAAACGTTTATCGTTGGACTTTTATAAACCACCAAGGAAAGTTAGGAGG 359
Query 363 AATAGAGG-GGA-AGA-GACTATCTTCTCCAGGAGAGATTTATACCGGAGAAGTTATGTT 419
|||||||| | ||| ||||||||||||| ||||||||| | || ||||||||||||||
Sbjct 360 AATAGAGGACAAGAGACGACTATCTTCTCCGGGAGAGATTCACACTGGAGAAGTTATGTT 419
Query 420 GGTTTCTTCTCGTTTAGAATCATCTAAACCTTTTTCTGTTTACTATTACGATCCGATCAA 479
||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 420 GGTTTCTGATCGTTTAGAATCATCTAAACCTTTCTCTGTTTTCTATTACGATCCGATCAA 479
Query 480 AGAGAGTTTCAGAAGTGCGGAAGTGGAAGGAATTGCGGACCATGAGTTTAGACGTATCCA 539
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 AGACAGTTTCAGAAGTGCGGAAGTTGAAGGAATTGCGGACCATGAGTTTAGACGTATCCA 539
Query 540 CGGAATTGGTAAGCGTGCTCGTGAGATGTTGTGTTTTCCAGGTCATATTGAGAACATCAT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 540 CGGAATTGGTAAGCGTGCTCGTGAGATGTTGTGTTTTCCAGGTCATATTGAGAATATCAT 599
Query 600 GTTCTTGTAA 609
||||||||||
Sbjct 600 GTTCTTGTAA 609
> Ahg941784 jgi|Araly1|941784|scaffold_602328.1
Length=828
Score = 154 bits (83), Expect = 7e-37
Identities = 215/276 (78%), Gaps = 19/276 (7%)
Strand=Plus/Plus
Query 37 GTGGAAGATCAATACAAAGTGCTGTGTGTGATGATGTTCCGTCGCTACGGCCGCGATGGT 96
|||||||| |||||||||||| ||||||| ||||| |||||| | ||| ||| |
Sbjct 136 GTGGAAGACCAATACAAAGTGTTGTGTGTAATGATATTCCGTGGTTAC-AACGCTA-ACC 193
Query 97 AA--AGACATAGAACAGGAGCATTTCGTTTTCAC-TCTGAGATCTCAACAAAAAGAGTGG 153
|| ||| || |||| ||||||| ||||||||| | | || ||||||||||||||||||
Sbjct 194 AACGAGATATCCAACAAGAGCATTACGTTTTCACGT-TAAGCTCTCAACAAAAAGAGTGG 252
Query 154 AGAAAGATTGACGTCACCGGAGAT-T--CTTACA-CA-GATGTCCAAGGAGGAATATGCA 208
||||||||||| ||||| |||| | |||| | || | || || | |||||||||||
Sbjct 253 AGAAAGATTGAAATCACCCAAGATATTACTTATATCACG--GTACATGAAGGAATATGCA 310
Query 209 TCGATGGTGCTATATACTATGGAGGAGTTGGACACAAAATATTAGCTAGATTTGATGTTA 268
| |||||||||||||||||||||| | | |||| | | | ||| || ||| |||||||
Sbjct 311 TGGATGGTGCTATATACTATGGAG-A-T-GGACGCTCAGGAATAGATATATTCGATGTTA 367
Query 269 GATCCGAGAAAG-TGGAGTTTATTAAAACAC-AGAA 302
|||| ||||| | ||||| | ||| ||| || ||||
Sbjct 368 GATCTGAGAA-GCTGGAGCTAATTCAAATACCAGAA 402
> Ahg915884 jgi|Araly1|915884|Al_scaffold_0008_635
Length=780
Score = 110 bits (59), Expect = 2e-23
Identities = 119/146 (82%), Gaps = 11/146 (8%)
Strand=Plus/Plus
Query 150 GTGGAGAAAGATTGACG-TCACCGGAGATTCTTACACAGATGTCCAAGGAGGAATATGCA 208
|||||||||||| || | |||| |||||| ||||| | || | |||| || || ||||
Sbjct 240 GTGGAGAAAGATCGA-GATCACGGGAGATCCTTACGCCTATTTAGAAGGCGGGATTTGCA 298
Query 209 TCGATGGTGCTATATACTATGGAGGAGTTGGACACA-AAATATTAGCTAGATTTGATGTT 267
|||||||||||||||||||||||| ||||||| | ||| || ||||||||||||| ||
Sbjct 299 TCGATGGTGCTATATACTATGGAG---TTGGACATACAAAGAT-AGCTAGATTTGATCTT 354
Query 268 AGATCCGAGAA-AGTGGA-GTTTATT 291
|||| |||||| | || | |||||||
Sbjct 355 AGATACGAGAAGA-TG-ACGTTTATT 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22263783528
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5