BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22794.2 Length=714 Score E Sequences producing significant alignments: (Bits) Value Ahg919164 jgi|Araly1|919164|scaffold_100445.1 254 8e-67 Ahg925011 jgi|Araly1|925011|scaffold_200572.1 172 2e-42 Ahg894153 jgi|Araly1|894153|Al_scaffold_0006_2149 152 3e-36 > Ahg919164 jgi|Araly1|919164|scaffold_100445.1 Length=958 Score = 254 bits (137), Expect = 8e-67 Identities = 183/205 (89%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 209 GACAAGCTCAAGAATCATTAGAAAATGTACTCATCGATCTTTATAAGAAAGGTGGAAGAA 268 |||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||| |||| Sbjct 307 GACAAGCTCAAGAATCATTAGACAATGTCCTCATCGATCTCTATAAGAAATGTGGGAGAA 366 Query 269 CAGAAGAGCAAGTTGAGCT-CTTGAAGCTACAA-CTTTGGATGATATATCAAGAAGAAGC 326 |||||||||||||||| | | |||||| | || ||||||||||||||||||| |||||| Sbjct 367 TAGAAGAGCAAGTTGAGTTAC-TGAAGC-AAAAGCTTTGGATGATATATCAAGGAGAAGC 424 Query 327 ATTCAATGGAAAACCAGCAAAAATTGCGAGATCTCATGGCCGGAAATTTCAGGTCACGGT 386 ||||||||| |||||| |||| | |||||| ||||||||| ||| |||||||||||||| Sbjct 425 ATTCAATGGCAAACCAACAAAGACTGCGAGGTCTCATGGCAAGAAGTTTCAGGTCACGGT 484 Query 387 CGAGAAGGAAACCTCTAGGATGTTG 411 ||||||||||||||||||||| ||| Sbjct 485 CGAGAAGGAAACCTCTAGGATCTTG 509 > Ahg925011 jgi|Araly1|925011|scaffold_200572.1 Length=417 Score = 172 bits (93), Expect = 2e-42 Identities = 137/158 (87%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 254 AGAAAGGTGGAAGAACAGAAGAGCAAGTTGAGCTCTTGAAGCTACAACTTTGGATGATAT 313 ||||| |||||| ||| ||||||||||| |||| ||||||| | || ||||||| ||| Sbjct 20 AGAAATGTGGAACTACAAAAGAGCAAGTTTAGCTATTGAAGC-A-AATTTTGGAT--TAT 75 Query 314 ATCAAGAAGAAGCATTCAATGGAAAACCAGCAAAAATTGCGAGATCTCATGGCCGGAAAT 373 |||| | |||||||||||||||||||||| |||| | | ||||||||||||| |||||| Sbjct 76 ATCAGGGAGAAGCATTCAATGGAAAACCAACAAACACTACGAGATCTCATGGAAGGAAAT 135 Query 374 TTCAGGTCACGGTCGAGAAGGAAACCTCTAGGATGTTG 411 ||||||||||||||||||||||||| |||||||| ||| Sbjct 136 TTCAGGTCACGGTCGAGAAGGAAACATCTAGGATCTTG 173 > Ahg894153 jgi|Araly1|894153|Al_scaffold_0006_2149 Length=672 Score = 152 bits (82), Expect = 3e-36 Identities = 87/89 (98%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 465 ATTCAAGTATATTCAGAACCAGAGTCTTCTTAAAGTGGATGAGTCAGACGATGAACCACT 524 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 423 ATTCAAGTATATTCAGAACCAGAGTCTTCTTGAAGTGGATGAGTCAGACGATGAACCACT 482 Query 525 TGACACAAAACAA-ATCAGCTCTTTGAAC 552 ||||||||||||| ||||||||||||||| Sbjct 483 TGACACAAAACAAGATCAGCTCTTTGAAC 511 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26266689813 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5