BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22794.2

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg919164 jgi|Araly1|919164|scaffold_100445.1                        254    8e-67
  Ahg925011 jgi|Araly1|925011|scaffold_200572.1                        172    2e-42
  Ahg894153 jgi|Araly1|894153|Al_scaffold_0006_2149                    152    3e-36


> Ahg919164 jgi|Araly1|919164|scaffold_100445.1
Length=958

 Score =  254 bits (137),  Expect = 8e-67
 Identities = 183/205 (89%), Gaps = 4/205 (2%)
 Strand=Plus/Plus

Query  209  GACAAGCTCAAGAATCATTAGAAAATGTACTCATCGATCTTTATAAGAAAGGTGGAAGAA  268
            |||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||| ||||
Sbjct  307  GACAAGCTCAAGAATCATTAGACAATGTCCTCATCGATCTCTATAAGAAATGTGGGAGAA  366

Query  269  CAGAAGAGCAAGTTGAGCT-CTTGAAGCTACAA-CTTTGGATGATATATCAAGAAGAAGC  326
             |||||||||||||||| | | |||||| | || ||||||||||||||||||| ||||||
Sbjct  367  TAGAAGAGCAAGTTGAGTTAC-TGAAGC-AAAAGCTTTGGATGATATATCAAGGAGAAGC  424

Query  327  ATTCAATGGAAAACCAGCAAAAATTGCGAGATCTCATGGCCGGAAATTTCAGGTCACGGT  386
            ||||||||| |||||| |||| | |||||| |||||||||  ||| ||||||||||||||
Sbjct  425  ATTCAATGGCAAACCAACAAAGACTGCGAGGTCTCATGGCAAGAAGTTTCAGGTCACGGT  484

Query  387  CGAGAAGGAAACCTCTAGGATGTTG  411
            ||||||||||||||||||||| |||
Sbjct  485  CGAGAAGGAAACCTCTAGGATCTTG  509


> Ahg925011 jgi|Araly1|925011|scaffold_200572.1
Length=417

 Score =  172 bits (93),  Expect = 2e-42
 Identities = 137/158 (87%), Gaps = 4/158 (3%)
 Strand=Plus/Plus

Query  254  AGAAAGGTGGAAGAACAGAAGAGCAAGTTGAGCTCTTGAAGCTACAACTTTGGATGATAT  313
            ||||| ||||||  ||| ||||||||||| |||| ||||||| | || |||||||  |||
Sbjct  20   AGAAATGTGGAACTACAAAAGAGCAAGTTTAGCTATTGAAGC-A-AATTTTGGAT--TAT  75

Query  314  ATCAAGAAGAAGCATTCAATGGAAAACCAGCAAAAATTGCGAGATCTCATGGCCGGAAAT  373
            |||| | |||||||||||||||||||||| |||| | | |||||||||||||  ||||||
Sbjct  76   ATCAGGGAGAAGCATTCAATGGAAAACCAACAAACACTACGAGATCTCATGGAAGGAAAT  135

Query  374  TTCAGGTCACGGTCGAGAAGGAAACCTCTAGGATGTTG  411
            ||||||||||||||||||||||||| |||||||| |||
Sbjct  136  TTCAGGTCACGGTCGAGAAGGAAACATCTAGGATCTTG  173


> Ahg894153 jgi|Araly1|894153|Al_scaffold_0006_2149
Length=672

 Score =  152 bits (82),  Expect = 3e-36
 Identities = 87/89 (98%), Gaps = 1/89 (1%)
 Strand=Plus/Plus

Query  465  ATTCAAGTATATTCAGAACCAGAGTCTTCTTAAAGTGGATGAGTCAGACGATGAACCACT  524
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  423  ATTCAAGTATATTCAGAACCAGAGTCTTCTTGAAGTGGATGAGTCAGACGATGAACCACT  482

Query  525  TGACACAAAACAA-ATCAGCTCTTTGAAC  552
            ||||||||||||| |||||||||||||||
Sbjct  483  TGACACAAAACAAGATCAGCTCTTTGAAC  511



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26266689813


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5