BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22810.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894156 jgi|Araly1|894156|Al_scaffold_0006_2152 1591 0.0
> Ahg894156 jgi|Araly1|894156|Al_scaffold_0006_2152
Length=1014
Score = 1591 bits (861), Expect = 0.0
Identities = 964/1015 (95%), Gaps = 2/1015 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGTGATGAAGGCACAGCCACTGGTTCCAGCAATTTTCATATTTGGTGATTCGGTG 60
|||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGTGATGATAAAGGCACAGCCACTGGTTCCAGCAATGTTCATATTTGGTGATTCGGTG 60
Query 61 GTTGATGTGGGAAACAACAATGATATCTACACAATCGTCAAAGCTAATTTCCCTCCTTAT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GTTGATGTGGGAAACAACAATGATATCTACACAATCGTTAAAGCTAATTTCCCTCCTTAT 120
Query 121 GGAAGAGATTTCACAACCCATACACCCACCGGACGCTTCTGCAATGGAAAGTTAGCTACT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAAGAGATTTCACAACCCATACACCCACCGGACGCTTCTGCAATGGAAAGTTAGCTACT 180
Query 181 GACTTCACCGCTGAGAATCTTGGGTTCAAATCATACCCACAAGCTTATCTAAGCAAAAAG 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 GACTTCACCGCTGAGAATCTTGGGTTCACATCATACCCACAAGCTTATCTAAGCAAAAAG 240
Query 241 GCAAAAGGCAAGAACCTTTTGATTGGAGCTAA-TTTCGCCTCTGCAGCCTCTGGTTATTA 299
||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 241 GCAAAAGGCAAAAACCTTTTGATTGGAGCTAACTTT-GCCTCTGCAGCCTCTGGTTATTA 299
Query 300 CGATGGCACAGCCAAGCTCTACAGTGCAATATCGTTGCCGCAACAGCTAGAACATTACAA 359
||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 300 CGACGGCACAGCCAAGCTATACAGTGCAATATCGTTGCCGCAGCAGCTGGAACATTACAA 359
Query 360 AGACTACATTAGTCGAATCCAAGAAATCGCAACCTCAAACAACAATTCAAACGCCAGTGC 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 360 AGACTACATTAGTCGAATCCAAGAAATCGCAACCTCAAACAACAACGCAAACGCCAGTTC 419
Query 420 CATAATCTCCAATGGCATCTATATCGTCAGCGCAGGGAGCAGCGACTTCATACAAAACTA 479
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 420 CATAATCTCCAATGGCATATATATAGTCAGCGCAGGGAGCAGTGACTTCATACAAAACTA 479
Query 480 CTATATCAACCCTCTCCTCTACAGAGACCAATCACCTGATGAGTTCTCTGATCTCCTTAT 539
|||||| ||||||||||| |||| || ||||||||||||||| ||||||||||| |||||
Sbjct 480 CTATATAAACCCTCTCCTATACAAAGTCCAATCACCTGATGACTTCTCTGATCTACTTAT 539
Query 540 CCTCTCCTACTCCAGTTTTATTCAGAATTTATATTCGTTAGGAGCAAGAAGGATCGGAGT 599
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 540 CCTCTCCTACTCCAGTTTTATTCAGAATTTGTATTCGTTAGGAGCAAGAAGGATAGGAGT 599
Query 600 GACTACACTTCCGCCCCTCGGTTGTTTACCGGCGGCCATAACTGTAGTGGGTCCACATGA 659
|||||| ||||||||||| || |||||||||||||| |||||||| | ||||||||| ||
Sbjct 600 GACTACGCTTCCGCCCCTGGGATGTTTACCGGCGGCGATAACTGTGGCGGGTCCACACGA 659
Query 660 GGGTGGATGCTCGGAGAAGCTTAACAACGACGCAATCTCCTTCAACAACAAACTCAATAC 719
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 660 AGGTGGATGCTCGGAGAAGCTTAACAACGACGCGATCTCCTTCAACAACAAACTCAATAT 719
Query 720 GACGTCACAGGATCTCAAGAGAAACCTCATTGGACTCAATTTAGTCGTCTTTGATATCTA 779
|||||| ||||| ||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 720 GACGTCGCAGGACCTCAAGAGAAACCTCATTGGACTCAATCTACTCGTCTTTGATATCTA 779
Query 780 TCAGCCTCTCTATGATCTTGCCACCAGGCCATCAGAATTTGGATTTGCAGAGGCAAGAAG 839
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCAGCCTCTCTATGATCTCGCCACCAGGCCATCAGAATTTGGATTTGCAGAGGCAAGAAG 839
Query 840 AGCTTGTTGTGGAACAGGGTTACTAGAGACATCAATACTGTGCAACCCAAAATCAGTAGG 899
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 AGCTTGTTGTGGAACAGGATTACTAGAGACATCAATACTGTGTAACCCAAAATCAGTAGG 899
Query 900 AACATGTAACAATGCAACTGAGTATGTCTTTTGGGACGGATTTCATCCAACGGAAGCTGC 959
|||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 900 GACATGTAATAATGCAACGGAGTATGTCTTTTGGGATGGATTTCATCCAACAGAAGCTGC 959
Query 960 TAACAAGATTCTCGCTGACAATCTCTTGGTCTCTGGCATCTCTCTCATCTCCTGA 1014
|||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 960 TAACAAGATTCTTGCTGACAATCTCTTGCTCTCTGGCATCTCTCTTATCTCCTGA 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5