BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22820.2
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894157 jgi|Araly1|894157|Al_scaffold_0006_2153 2178 0.0
> Ahg894157 jgi|Araly1|894157|Al_scaffold_0006_2153
Length=1596
Score = 2178 bits (1179), Expect = 0.0
Identities = 1476/1613 (92%), Gaps = 46/1613 (3%)
Strand=Plus/Plus
Query 33 ATGGAAGACGATGAAGCGACGAAACAGCGAGGAATACTTgaagaagaagaagaaaatttt 92
||||| ||||||||| | |||| |||||| ||| ||||||||||||||||||| |||||
Sbjct 1 ATGGAGGACGATGAA--G-CGAAGCAGCGAAGAAAACTTGAAGAAGAAGAAGAAGATTTT 57
Query 93 -actggaa-gaagagaagaaagt-gaaaaCGAGTTTCCCTCACATCATCCTCCTCCTCCG 149
| | ||| |||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 58 GA-T-GAACGAAGAGAAGAAA-TAGAAAACGATTTTCCCTCACATCATCCTCCTCCTCCG 114
Query 150 CCTGATGAGTTGTTTGACATTTCGACTACAGTTGATCCTAGCTATCTTATTTCACTGATA 209
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 115 CCTGATGAGTTCTTTGACATTTCGACTACAGTTGATCCTAGCTATGTTATTTCACTGATA 174
Query 210 AGGAAACTCCTTCCAATTGATTCGGGAAGTGACGAACGACATAATGATCATATGAATACG 269
|||||||||||||| |||||||||| | |||||||||||||||| ||||||||||| ||
Sbjct 175 AGGAAACTCCTTCCTGTTGATTCGGGTACTGACGAACGACATAATCATCATATGAATGCG 234
Query 270 GATAATGTGGTTCAAGGTGTAGTAGCTATATCTGGAAATGGGGTTGTTGAGACTTCCAAT 329
|||||||||||||| |||||||||||| ||||| | || | |||||||||
Sbjct 235 GATAATGTGGTTCACGGTGTAGTAGCTGTATCTAG-AA-----------ACACTTCCAAT 282
Query 330 GGTGATCCAGAGAGCATGGACATTGGAGATAATCATGATGAATCCACTTATGAGGTG-GG 388
||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| ||
Sbjct 283 GGTGATCCAGAGAGCATGGACATTGAAGATAATCATAATGAATCCACTTCCGAGGTGAGG 342
Query 389 GGAGACGGTTAGTTCATGTCCAGCGCCGGGAATGCAAGACGGGTCATC-------G--GC 439
|| ||||| |||||||||| | ||||||||||| || ||||||||| | ||
Sbjct 343 GG-CACGGTCAGTTCATGTCGGGAGCCGGGAATGCTAGGCGGGTCATCAGTGGAAGAAGC 401
Query 440 ATGGGAAGATCATGGTTGTGTTTTGTGGGATCTTGCCGCCAGTAGAACTCATGCTGAGCT 499
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 402 ATGGGAAGATCATGGTTGTGTTTTGTGGGATCTTGCCGCTAGTAGAACTCATGCTGAGCT 461
Query 500 AATGGTACAGAACCTAATTTTAGAAGTGCTTCACGCAAACCTTATGGTTTCAAAATCTCC 559
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 462 AATGGTACAGAACCTAATTTTAGAAGTGCTTCACGCAAACCTTATGGTTTCAACATCTGC 521
Query 560 CCGTATTCGAGAAATCTGTCTCGGGATTATTAGGAACCTTGCTTGCCATGAAGGTCTGTT 619
||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 522 CCGCATTCGAGAAATTTCTCTCGGGATTATTGGGAACCTTGCTTGCCATGAAGGTTTGTT 581
Query 620 GAAACATATAGAGTCTACAGCCGGAATCGTCAATACACTTGTGGGGCAGTTGTTTCTTGA 679
||||||||||||||||||||| ||| |||| |||| ||| |||||||||||||||| |||
Sbjct 582 GAAACATATAGAGTCTACAGCTGGACTCGTAAATATACTCGTGGGGCAGTTGTTTCATGA 641
Query 680 TGATACCCAATGCCTAAGTGAAGTTTGCAGGATACTCACCACAGGACTCTCTGGCGCTGG 739
|||||||||||||||||||||||||||||||||| |||| |||||||||| ||| |||||
Sbjct 642 TGATACCCAATGCCTAAGTGAAGTTTGCAGGATATTCACTACAGGACTCTATGGGGCTGG 701
Query 740 GTGTACTTCCTGGGCCCATTGTTTGGAGTCTGATGATATACTTCGCCATATTTTGTGGAT 799
||| |||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 702 GTGCACTTTTTGGGCTGATTGTTTGAAGTCTGATGATATACTTCGCCGTATTTTGTGGAT 761
Query 800 TGCGGAAAATACCTTGAATCCTCATCTTATTGAAAAGAGTGTAGGGCTATTGTTAGGTAT 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 762 TGCGGAAAATACCTTGAATCCTCATCTTATTGAAAAGAGTGTAGGGCTATTGTTAGGCAT 821
Query 860 CATAGAAGGTCAACCTGAGGTTGAGCAGCTATTGATTCCTCCACTAATGAATCTGGGTTT 919
||||||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 822 CATAGAAGGTCAACCAGAGATTGAGCAGCTATTGATCCCCCCACTAATGAATCTGGGTTT 881
Query 920 GACGAGTCTCTTGATCAATCTTCTTTCATTTGAAATGAGCAAGTTGACTAAAGAAAGAAT 979
||| || ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 882 AACGGGTGTCTTGATCAATCTTCTTTCCGTTGAAATGAGCAAGTTGACTAAAGAGAGAAT 941
Query 980 TCCAGAAAGGTACCCCGTCCTTGAAATTATTCTCCGAGCTATTGAAGCCCTTTCTGCTTC 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 TCCAGAAAGGTACCCCGTCCTTGAAATTATTCTCCGAGCTATTGAAGCCCTTTCTGCTTC 1001
Query 1040 AGATAGCTATTCTAAAGAGATTTGCTCTAGCAAAGAACTTTTTCAATTAGTCTGTGATCT 1099
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1002 AGATAGCCATTCTAAAGAGATTTGCTCTAGCAAAGAACTTTTTCAACTAGTCTGTGATCT 1061
Query 1100 TATGAAACTTCAGGACAAAGCCGAGGTTGCAACATCTTGTGTTACTACTGGAGTTTTAAT 1159
| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 1062 TTTGAAACTTCAGGACAAAACCGAGGTGGCAACATCTTGTGTTACTGCTGGAGTTTTAAT 1121
Query 1160 CGCAAATATGCTGTCTGAAAGAGTCGATTTCATTCCAGAAGTATTGGAAGATTTTTCTTT 1219
||||||||||||||| |||| ||||| |||||||||| |||||| | |||||||||||||
Sbjct 1122 CGCAAATATGCTGTCGGAAACAGTCGTTTTCATTCCAAAAGTATCGCAAGATTTTTCTTT 1181
Query 1220 CTTGGAAGGTTTATTCAGTACTTTACCATTTGCTTCGGATGATGTAGAAGCAAGAAGAGC 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CTTGGAAGGTTTATTCAGTACTTTACCATTTGCTTCGGATGATGTAGAAGCAAGAAGAGC 1241
Query 1280 CCTTTGGAATGTTATTGCGAGATTACTTGCCAGAGTTAATGAATCCGAGATAAACACATT 1339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TCTTTGGAATGTTATTGCGAGATTACTTGCCAGAGTTAATGAATCCGAGATAAACACATT 1301
Query 1340 CCT-TCTGAGTCAGTACATATTGGTTTTGTTAAGCAACGCAGATATTATTGAAGATGATT 1398
| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1302 C-TGTCTGAGTCAGTACATATTGGTTTTGTTAAGCAAAGCAGATATTATAGAAGATGATC 1360
Query 1399 TTCTTGATACCCAACTAGAAGATTCAAACGAG---TCCCGAAACTCATTCCCTTCCCAGA 1455
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1361 TTCTTGATACCCAACTAGAAGATTCAAACGAGGAGTCCCAAAACTCATTCCCTTCCCAGA 1420
Query 1456 TAAAGTCAAGCGCACGAACAATTGCT--ATA-CAGA-A-G-A---TTGAATCGATATTGA 1506
||||||||||||| |||||||||||| | | |||| | | | |||||||||||||||
Sbjct 1421 TAAAGTCAAGCGCGCGAACAATTGCTCGACAACAGATACGGAAGATTGAATCGATATTGA 1480
Query 1507 ACAATTGGAATGCTCGCAAGGAGAATTTACAGGAGGAAACCGTGAACGGGAATTGCTCTA 1566
|||||||||||| |||||||||| |||| ||||||||||| ||||||| |||||||||||
Sbjct 1481 ACAATTGGAATGTTCGCAAGGAGGATTTCCAGGAGGAAACAGTGAACGAGAATTGCTCTA 1540
Query 1567 TAAACCTAGCTGATGTTAAAAGGCTATTCGATTGCTGTCACAGATATATCAAG 1619
||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1541 TAATCCTAGCTGATGTTAAAAGGCTATCCGATTGCTGTCACAGATATATCAAG 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71457299620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5