BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22830.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489136 jgi|Araly1|489136|fgenesh2_kg.6__2270__AT5G22830.1 2342 0.0
> Ahg489136 jgi|Araly1|489136|fgenesh2_kg.6__2270__AT5G22830.1
Length=1475
Score = 2342 bits (1268), Expect = 0.0
Identities = 1419/1490 (95%), Gaps = 17/1490 (1%)
Strand=Plus/Plus
Query 3 TTTTTTGGTAAAATTATCCTTAAAGCTAAAAATCTCCATAACCAAAGCTTCTTCGTTCCA 62
|||||| |||||||||||| | ||||||||| ||||||||||||||||||| | |||||
Sbjct 1 TTTTTTTGTAAAATTATCC-TCAAGCTAAAATTCTCCATAACCAAAGCTTC--C-TTCCA 56
Query 63 CCAGCACCAAACCAACAATGGCGTTAACTCCAATTCCTTCAACATTCActtctctcttca 122
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 57 CCAGCACCAAACCAACAATGGCGTTAACTCCAATTCCTTCAACATTCACTTCACTCATCA 116
Query 123 act-tctccgatcactctccatatccatctccatctctccattatcttcttcctggatct 181
| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 A-TATCTCCGATCATTCTCCATATCCATCTCCATCTCTCCATTATCTTCTTCCTGGATCT 175
Query 182 tctccttccttttctctccagttatctGCGT-TGAGTAGAACTCCGATCTACTTCGAGGC 240
|||||||||||||||||||| ||||| || | ||||||||||||||||||| ||||||||
Sbjct 176 TCTCCTTCCTTTTCTCTCCACTTATCGGC-TCTGAGTAGAACTCCGATCTATTTCGAGGC 234
Query 241 ACTTAAAGTTTTATCGAGATCGAAATGTTTCGCCAAGTCTCCGACAACCGCCGAGGATTT 300
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 235 ACTTAAAGTTTTATCGAGATCGAAATGTTTCGCCAAGTCTCCCACAACTGCCGAGGATTT 294
Query 301 CGTCGGCGATTACGAATCCCTTAACGTTAGCGACGACGACGATGGTAGTGACAGTAATAG 360
|||||| ||||||||| |||| ||||||| | |||||| ||||||||||||||||||||
Sbjct 295 CGTCGGAGATTACGAAACCCTAAACGTTA--G-CGACGATGATGGTAGTGACAGTAATAG 351
Query 361 TAGTGATGGAGATAACGGAGGAGGAAGAGATGATTCAAAGAAGATCGAttcttcttcttc 420
|||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 352 TAGTGATGGAGATAAC---GGAGGAAGAGAGGATTTAAAGAAGATCGATTCTTCTTCTTC 408
Query 421 ttcttcATCAAGTGACTCTACGTCTCTGGGAATTCGTGAACCGGTTTATGAGGTTGTGGA 480
||| | |||||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 409 TTC-T--TCAAGTGATTCTACATCGCTAGGAATTCGTGAACCGGTTTATGAGGTTGTGGA 465
Query 481 AGTGAAGGCGACTGGAGCAATATCTACAAGGAAGATTAACAGACGACAGCTGCTTAAATC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 466 AGTGAAGGCGACTGGAGCAATATCTACAAGGAAGATTAACAGACGACAGCTGCTCAAATC 525
Query 541 CAGTGGTCTTCGTCCAAGAGATATACGAAGCGTTGATCCTTCGTTGTTTATGACAAACTC 600
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 526 CAGTGGTCTTCGTCCGAGAGATATCCGAAGCGTTGATCCTTCGTTGTTTATGACAAACTC 585
Query 601 AGTGCCATCTCTATTGGTCCGTGAACATGCGATTCTGCTAAATTTGGGCTCCCTGAGAGC 660
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 586 AGTGCCATCTTTATTGGTCCGTGAACATGCGATTTTGCTAAATTTGGGCTCCCTGAGAGC 645
Query 661 AATAGCCATGCGAGACCGTGTCCTTATATTTGATTATAACCGGAGAGGAGGAAGAGCTTT 720
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AATAGCAATGCGAGACCGTGTCCTTATATTTGATTATAACCGGAGAGGAGGAAGAGCTTT 705
Query 721 TGTAGATACATTGATGCCTCGGCTTAACCCAAGAAGTATGAATGGAGGACCCTCTATGCC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TGTAGATACATTGATGCCTCGGCTTAACCCAAGAAGTATGAATGGAGGACCCTCTATGCC 765
Query 781 ATTTGAACTAGAGGCTGTTGAATCGGCGCTAATCTCAAGGATACAACGATTAGAGCAAAG 840
||||||| |||||| ||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 766 ATTTGAATTAGAGGTTGTTGAATCAGCGCTTATATCAAGGATACAACGATTAGAGCAAAG 825
Query 841 GCTTATGGACATTGAACCCCGTGTCCAAGCTCTACTTGAGGTTTTACCCAACCGCTTAAC 900
||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 826 GCTTATGGACATTGAACCCCGTGTCCAAGCTCTTCTTGAAGTTTTGCCCAATCGCTTAAC 885
Query 901 TGCCGATATATTGGAGGAACTTCGTATTAGCAAACAAAGACTGGTTGAATTGGGCTCCCG 960
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 886 TGCTGATATATTGGAGGAACTTCGTATTAGCAAACAAAGACTGGTTGAATTGGGCTCCAG 945
Query 961 AGCTGGAGCTCTTAGACAAATGCTCCTGGATCTTTTAGAGGATCCCCATGAAATACGCCG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 AGCTGGAGCTCTTAGACAAATGCTCCTGGATCTTTTAGAGGATCCCCATGAAATACGCCG 1005
Query 1021 CATATGCATCATGGGAAGAAATTGCACACTTAGAAGAGGAGACGATGATTTGGAGTGTAC 1080
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1006 CATATGCATCATGGGAAGAAATTGCACTCTTAGAAGAGGAGACGATGATTTGGAGTGTAC 1065
Query 1081 ATTACCCTCAGATAAGCTGATTGCTGAGGAAGAAGAGGAGGAAATCGAAATGCTCTTGGA 1140
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1066 GTTACCCTCAGACAAGCTGATTGCCGAGGAAGAAGAGGAGGAAATTGAAATGCTCTTGGA 1125
Query 1141 GAACTATCTGCAAAGATGTGAGTCATGCCATGGACAAGCAGAAAGACTTCTGGATTCTGC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 GAACTATCTGCAAAGATGTGAGTCATGCCATGGACAAGCAGAAAGACTTCTGGATTCTGC 1185
Query 1201 AAAGGAAATGGAAGACTCAATTGCTGTCAATCTAAGTTCTCGGAGGCTTGAGGTCAGCAG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 AAAGGAAATGGAAGACTCAATTGCTGTCAATCTAAGTTCTCGGAGGCTTGAGGTCAGCAG 1245
Query 1261 GTTCGAGTTGCTTCTTCAGGTCGGTACATTTTGTGTTGCAGTTGGTGCTCTCATCGCAGG 1320
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1246 ATTCGAGCTGCTTCTTCAGGTCGGTACATTCTGTGTTGCAGTTGGTGCTCTCATCGCAGG 1305
Query 1321 TATATTCGGCATGAACTTGAGGTCCTATCTTGAAGAACAAGCTTCTGCATTCTGGCTAAC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TATATTCGGCATGAACTTGAGGTCCTATCTTGAAGAACAAGCTTCTGCATTCTGGCTAAC 1365
Query 1381 AACGGGTGGAATCATCATAGGCGCTGCAGTCGCCTTCTTTCTCATGTATTCCTATCTCAG 1440
||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1366 AACAGGTGGAATCATCATAGGCGCTGCAGTCGGCTTCTTCCTCATGTATTCCTATCTCAG 1425
Query 1441 TAGACGCAAAATCTTTTGAACCTTCAATCCTAAAAGACGAAAGAAGAGGT 1490
|||||| |||||||| ||||||||||||||||||||| | || |||||||
Sbjct 1426 TAGACGAAAAATCTTCTGAACCTTCAATCCTAAAAGATGGAACAAGAGGT 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5