BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22840.1
Length=2123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489137 jgi|Araly1|489137|fgenesh2_kg.6__2271__AT5G22840.1 2361 0.0
Ahg897265 jgi|Araly1|897265|Al_scaffold_0005_1231 1266 0.0
Ahg485678 jgi|Araly1|485678|fgenesh2_kg.5__1670__AT3G53030.1 303 3e-81
> Ahg489137 jgi|Araly1|489137|fgenesh2_kg.6__2271__AT5G22840.1
Length=1678
Score = 2361 bits (1278), Expect = 0.0
Identities = 1536/1654 (93%), Gaps = 43/1654 (3%)
Strand=Plus/Plus
Query 117 GGCGATGGCGGATGAGAAGAACGGTGGACGTCTGAGTGACGCTAGTGACTACTCATCAGA 176
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 1 GGCGATGGCGGATGAGAAGAACGGTGGACGTGTGAGTGACGCTAGTGACTACTCGTCTGA 60
Query 177 GGACGAAGGAACAGAAGATTACAGAAGAGGAGGTTACCAT-ACGGTTCGAGTCGGTGATA 235
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 61 GGACGAAGGAACAGAAGATTACAGAAGAGGAGGTTACCATGA-GGTTCGAGTCGGTGATA 119
Query 236 CTTTTAAGAATGGATCTTATGTCATTCAAAGTAAGCTTGGTTGGGGACATTTCTCCACTG 295
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 CTTTTAAGAATGGTTCTTATGTCATTCAGAGTAAGCTTGGTTGGGGACATTTCTCCACTG 179
Query 296 TCTGGCTCGCTTGGGACACTCTCAACTCTCGATACGTAGCTTTGAAAATCCAGAAGAGTG 355
|||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 180 TCTGGCTCTCTTGGGACACTCTAAAATCTCGATACGTAGCTTTGAAAATCCAGAAGAGTG 239
Query 356 CTCAGCACTACACTGAAGCGGCCATGGATGAGATAAAGATATTGAAACAGATTGCAGAAG 415
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 240 CTCAGCACTACACTGAGGCGGCAATGGATGAGATAAAGATCTTGAAACAGATTGCGGAAG 299
Query 416 GCGATGCGGAAGATAAGAAGTGTGTTGTGAAGCTTCTTGATCATTTCAAGCATGCTGGTC 475
| || || |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 300 GTGACGCCGAAGATAAGAAGTGTGTTGTGAAGCTTCTTGATCATTTCAAGCACGCAGGTC 359
Query 476 CTAATGGGCAACATGTTTGTATGGTTTTTGAGTATTTGGGAGATAACCTCTTGTCGGTTA 535
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 CTAATGGGCAACATGTTTGTATGGTCTTTGAGTATTTGGGAGATAACCTCTTGTCGGTTA 419
Query 536 TCAAGTACAGTGATTACCGAGGGGTTCCTCTTCATATGGTTAAAGAGATCTGTTTTCATA 595
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 TCAAGTACAGCGATTACCGAGGGGTTCCTCTTCATATGGTTAAAGAGCTCTGTTTTCATA 479
Query 596 TCTTAGTTGGTTTGGATTATCTTCATCGTGAACTTTCTATTATTCATACTGATATCAAGC 655
| || ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 480 TTTTGGTTGGGTTGGATTATCTTCATCGTGAGCTTTCGATTATTCATACTGATATCAAGC 539
Query 656 CGGAGAATATTCTGCTTTGTTCCACTATTGACCCTGAAGCAGATGCTCGGAAATCGGGGA 715
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAGAGAACATTCTGCTTTGTTCCACTATTGACCCTGAAGCAGATGCTCGGAAATCGGGGA 599
Query 716 TTCCTCTTGTTCTTCCAACTG-TGAAGGACAAGGCTGTTCCTGAGAGACCA-GTTGAAAA 773
||||||||||||||||||||| | ||||||||| |||||| ||||||| || | ||||||
Sbjct 600 TTCCTCTTGTTCTTCCAACTGCT-AAGGACAAGACTGTTCTTGAGAGA-CAGGCTGAAAA 657
Query 774 AGAGAAACCTAAGAGTTATACGTATAGTGCGGATTTGACTAAGAATCAGAAGAAGAAGAT 833
|||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 658 GGAGAAACCCAAGAGTTACACGTACAGTGCGGATTTGACTAAGAATCAGAAAAAGAAGAT 717
Query 834 CCGTAAGAAAGC--------T--AA-G--AA--A----GT---G--GAAGGTTCAGAGGA 869
|| |||||||| | || | || | || | ||||| ||||||||
Sbjct 718 TCGGAAGAAAGCTAAGAAAGTGGAAGGTCAAGGATGTGGTGGAGAAGAAGGCTCAGAGGA 777
Query 870 AAATGAGAGAGACTCTTCTAACTCTGAGGCAAGACCAAATGGAAATGCAACTGTGGAGAG 929
||||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 778 TAATGAGAGAGA---TTCTAACTCTGAGGCAAGACAAAACGGAAATGCAACGGTGGAGAG 834
Query 930 GTTGGAAGAGAGTTCTGAAAGAGTAAAAGATGCAGAGAATGTTAGTCAAAAGAGCCGGGG 989
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GTCGGAAGAGAGTTCTGAAAGAGTAAAAGATGCAGAGAATGTTAGTCAAAAGAGCCGGGG 894
Query 990 AAATAGGAGAGGAAGCCAATCCACGAGGCAAAAGTTACTTGCGGATGTTGATCGGAAATG 1049
|||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 895 CAATAGGAGAGGAAGTCGATCCACGCGGCAAAAGTTACTTGCGGATGTTGATCGGAAATG 954
Query 1050 CAAGTTGGTGGATTTTGGGAATGCTTGTTGGACTTATAAACAGTTTACGAGTGATATTCA 1109
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CAAGTTAGTGGATTTTGGGAATGCTTGTTGGACTTATAAACAGTTTACGAGTGATATTCA 1014
Query 1110 GACAAGACAGTACCGGTGTCCTGAGGTTGTTCTTGGCTCAAAATACTCAACCTCAGCGGA 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GACAAGACAGTACCGGTGTCCTGAGGTTGTTCTTGGCTCAAAATACTCAACCTCAGCGGA 1074
Query 1170 TATGTGGTCATTTGCTTGCATTTGTTTTGAGCTTGCCACCGGAGATGTTCTATTCGATCC 1229
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1075 TATGTGGTCATTTGCTTGCATTTGTTTTGAGCTTGCCACCGGAGATGTTCTATTTGATCC 1134
Query 1230 TCACAGTGGTGAAAACTTTGAGCGAGATGAGGATCACTTGGCATTGATGATGGAGCTTCT 1289
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1135 TCACAGTGGTGAAAACTTTGAGCGGGATGAGGATCACTTGGCATTGATGATGGAGCTTCT 1194
Query 1290 CGGGATGATGCCACGAAAGATTGCATTAGGTGGACGCCATTCGCGGGATTTCTTCAACCG 1349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TGGGATGATGCCACGAAAGATTGCATTAGGTGGACGCCATTCGCGGGATTTCTTCAACCG 1254
Query 1350 ACAGGGTGAACT-ACGGCACATCAGGCGGTTACGGTTTTGGCCACTTAGCAAGGTCTTAA 1408
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ACAGGGTGAACTGA-GGCACATCAGGCGGTTACGGTTTTGGCCACTTAGCAAGGTCTTAA 1313
Query 1409 CAGATAAATATGACTTCAGCGAGGAAGACGCAATTGCTATGCAAGATTTCATCACTCCCA 1468
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1314 CAGATAAATATGACTTCAGCGAGGAAGACGCAATTGCTTTGCAAGATTTCATCATTCCCA 1373
Query 1469 TTCTTCAATTTGTACCTGAGAAGAGACCGACGGCTGCTCAGTGCCTAACGCACCCATGGT 1528
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TTCTTGAATTTGTACCTGAGAAGAGACCGACGGCTGCTCAGTGCCTAACGCACCCATGGA 1433
Query 1529 TGAATCCGGTCCCTAAATCACTGAAACCGTCATCGAGTCCACAAAATCCCAAAGAAGAAG 1588
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 1434 TGAATCCGGTCCCTAAATCACTGAAACCGTCACCGAGTCCACAAAAACCCAAAGATGAAG 1493
Query 1589 AAGAGGAAGCGTCGGATGAGGATAAAGAT-AAGGAAAAGGTTGAGAGGGAAGCCATGGAG 1647
||| | | | ||||| ||||| | |||||||| | |||||||||||||||||||
Sbjct 1494 AAGT--AC-CA-C--ATGAGAATAAA-ACGAAGGAAAATGATGAGAGGGAAGCCATGGAG 1546
Query 1648 GCAGGTGTTGGAAATATCGCCATTGATGGCTCGGAAAGAAAGACCTCAGCAAGAGAAGGT 1707
| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1547 GTTGGTGTTGGGAATATCGCCATTGATGGCTCAGAACCAAAGACCTCAGCAAGAGAAGGT 1606
Query 1708 CGTCAATCAGCTCGTGATCTTCGTACTTAAGAAA 1741
|||||||| ||||||||||||| |||||| |||
Sbjct 1607 CGTCAATCTGCTCGTGATCTTCACACTTAAAAAA 1640
> Ahg897265 jgi|Araly1|897265|Al_scaffold_0005_1231
Length=1647
Score = 1266 bits (685), Expect = 0.0
Identities = 1350/1658 (81%), Gaps = 98/1658 (6%)
Strand=Plus/Plus
Query 121 ATGGCGGATGAGAAGAACGGTGGACGTCTGAGTGACGCTAGTGACTACTCATCAGAGGAC 180
|||||||| || || ||||| |||||| ||| |||| | ||| |||||||| ||||||
Sbjct 1 ATGGCGGAGGAAAAAAACGGCGGACGTGTGAACGACGAAACTGAATACTCATCGGAGGAC 60
Query 181 GAAGGAACAGAAGATTA-CAGAAGAGGAGGTTACCATACGGTTCGAGTCGGTGATACTTT 239
||||| || || ||||| |||| |||||| ||||||||||| |||| |||||||||||
Sbjct 61 GAAGGTACGGAGGATTATAAGAA-AGGAGGATACCATACGGTGAGAGTTGGTGATACTTT 119
Query 240 TAAGAATGGATCTTATGTCATTCAAAGTAAGCTTGGTTGGGGACATTTCTCCACTGTCTG 299
||| |||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 120 TAAAAATGGAGCTTATGTGATTCAGAGTAAGCTTGGTTGGGGACATTTCTCTACTGTTTG 179
Query 300 GCTCGCTTGGGACACTCTCA-ACTCTCGATACGTAGCTTTGAAAATCCAGAAGAGTGCTC 358
||| ||||||||||||| | | || || || |||||||||||| | |||||||| ||||
Sbjct 180 GCTTGCTTGGGACACTC-AAGAATCGCGTTATGTAGCTTTGAAAGTTCAGAAGAGCGCTC 238
Query 359 AGCACTACACTGAAGCGGCCATGGATGAGATAAAGATAT-TGAAACAGATTGCAGAAGGC 417
| ||||| || || || || ||||||||||||||||| | ||||||||||||| |||||
Sbjct 239 AACACTATACAGAGGCAGCAATGGATGAGATAAAGAT-TCTGAAACAGATTGCTGAAGGT 297
Query 418 GATGCGGAAGATAAGAAGTGTGTTGTGAAGCTTCTTGATCATTTCAAGCATGCTGGTCCT 477
|| ||| ||||||||||||||||| ||||| || ||||||||||||||| | ||||||
Sbjct 298 GACCCGGGTGATAAGAAGTGTGTTGTAAAGCTACTGGATCATTTCAAGCATTCGGGTCCT 357
Query 478 AATGGGCAACATGTTTGTATGGTTTTTGAGTATTTGGGAGATAACCTCTTGTCGGTTATC 537
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 358 AATGGGAAACATGTTTGTATGGTTTTTGAGTATTTGGGAGATAACCTTTTGTCAGTTATT 417
Query 538 AAGTACAGTGATTACCGAGGGGTTCCTCTTCATATGGTTAAAGAGATCTGTTTTCATATC 597
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 418 AAGTACAGTGATTACCGAGGGGTTCCTCTTCACATGGTTAAAGATCTCTGTTTTCATATT 477
Query 598 TTAGTTGGTTTGGATTATCTTCATCGTGAACTTTCTATTATTCATACTGATATCAAGCCG 657
|| ||||| |||||||||||||||||||| || |||||||||||||||||| | ||||||
Sbjct 478 TTGGTTGGGTTGGATTATCTTCATCGTGAGCTCTCTATTATTCATACTGATTTAAAGCCG 537
Query 658 GAGAATATTCTGCTTT-GTTCCACTATTGACCC-TGAAGCAGATGCTCGGAAATCGGG-G 714
|||||| ||||||||| || | || ||||| || | ||| ||||||||||| ||||| |
Sbjct 538 GAGAATGTTCTGCTTTTGT-CTACGATTGATCCATCAAG-AGATGCTCGGAGGTCGGGTG 595
Query 715 ATTCCTCTTGTTCTTCCAACTGTGAAGGACAAGGCTGTTCCTGAGAGACCAGTTGAAAAA 774
|||| |||||||| ||||| | |||||||| |||| ||||| | | | || |||
Sbjct 596 -TTCCACTTGTTCTGCCAACCGCCAAGGACAAAATTGTTTCTGAG-G-CT-GCTGCTAAA 651
Query 775 GA-GAAACCTAAGAGTTATACGTAT-AGTGCGGATTTGACTAAGAATCAGAAGAAGAAGA 832
||||| |||||||||||||||| | || ||||||||| ||||||||||| |||||||
Sbjct 652 CCTGAAAC-TAAGAGTTATACGTATGA-TGGGGATTTGACAAAGAATCAGAAAAAGAAGA 709
Query 833 TCCGTAAGAAAGCTAAGAAAGTGGAAGGT---TCA-GA--G-G----A-A--AA--T--- 873
| ||||||||||| ||||| |||| ||| ||| || | | | | || |
Sbjct 710 TTCGTAAGAAAGCGAAGAAGGTGGT-GGTGGCTCAAGATTGTGGTGGAGAGGAAGCTTTA 768
Query 874 GA-GA----GA--GACTCTTCTAACTCTGAGGCAAGACCAAATGGAAATGCAACTGTGGA 926
|| || || || ||||||||| || |||||| ||||||| ||| | ||||| ||
Sbjct 769 GAAGAAAATGAAAGAGA-TTCTAACTCCGAAGCAAGAACAAATGGCAATTCCACTGTAGA 827
Query 927 GAGGTTGGAAGAGA-GTTCTGA-AAGAGTAA---AAGATG------C-AGAGA-ATGT-T 972
||| | ||||| || |||| | |||| ||| |||||| | ||||| | | |
Sbjct 828 GAGATCGGAAG-GAAGTTCC-ACAAGATTAATGGAAGATGAAGAAGCCAGAGAGAAGGCT 885
Query 973 AGTCAAAA-GA--GC-CGGGGAAATAGGAGAGGAAGCC-AATCCACGAGGCA-AAAGTTA 1026
| ||||| || | ||||| | |||||||||||||| || |||| ||||| ||| |||
Sbjct 886 AA-CAAAAAGAATGGTCGGGGTAGTAGGAGAGGAAGCCGAA-CCACAAGGCAGAAA-TTA 942
Query 1027 CTTGCG-GATGTTGA-TCGGAAATGCAAGTTGGTGGATTTTGGGAATGCTTGTTGGACTT 1084
|| | | ||| | || | | |||||||| || || |||||||| |||||||||||||| |
Sbjct 943 CT-GAGTGATATAGAGT-GCAAATGCAAATTAGTAGATTTTGGTAATGCTTGTTGGACAT 1000
Query 1085 ATAAACAGTTTACGAGTGATATTCAGACAAGACAGTACCGGTGTCCTGAGGTTGTTCTTG 1144
|||||||||| || || |||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1001 ATAAACAGTTCACAAGCGATATTCAGACAAGGCAGTACCGATGTCCAGAGGTTGTTCTTG 1060
Query 1145 GCTCAAAATACTCAACCTCAGCGGATATGTGGTCATTTGCTTGCATTTGTTTTGAGCTTG 1204
| ||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| |
Sbjct 1061 GATCAAAATACTCAACCTCTGCAGATATGTGGTCCTTTGCTTGTATTTGTTTCGAGCTGG 1120
Query 1205 CCACCGGAGATGTTCTATTCGATCCTCACAGTGGTGAAAACTTTGAGCGAGATGAGGATC 1264
||||||||||||| ||||| ||||||||||| |||||||||| ||| || ||||||||||
Sbjct 1121 CCACCGGAGATGTCCTATTTGATCCTCACAGCGGTGAAAACTATGACCGGGATGAGGATC 1180
Query 1265 ACTTGGCATTGATGATGGAGCTTCTCGGGATGATGCCACGAAAGATTGCATTAGGTGGAC 1324
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1181 ACCTGGCATTGATGATGGAGCTTCTCGGGATGATGCCACGAAAGATTGCATTAGGTGGTC 1240
Query 1325 GCCATTCGCGGGATTTCTTCAACCGACAGGGTGAACTACGGCACATCAGGCGGTTACGGT 1384
| | ||||||||||| || |||||||| ||||||||| |||||||| ||||||| ||||
Sbjct 1241 GATACTCGCGGGATTTTTTTAACCGACAAGGTGAACTAAGGCACATCCGGCGGTTGCGGT 1300
Query 1385 TTTGGCCACTT-AGCAAGGTCTTAACAG-ATAAATATGACTTCAGCGAGGAAGACGCAAT 1442
||||||| | | ||||| ||||| | || | |||||||| ||||||||| | |||||||
Sbjct 1301 TTTGGCC-CATCAGCAAAGTCTTGA-AGGAGAAATATGATTTCAGCGAGCAGGACGCAAA 1358
Query 1443 TG-CTATG-CAAGATTTCATCACTCCCA-TTCTTCAATTTGTACCTGAGAAGAGACCGAC 1499
| | ||| || |||||| | | ||||| ||||| ||||||| |||||||||||||| ||
Sbjct 1359 AGAC-ATGGCA-GATTTCTT-AGTCCCAATTCTTGAATTTGTGCCTGAGAAGAGACCAAC 1415
Query 1500 GGCTGCTCAGTGCCTAACGCACCCATGGTTGAATCC-GGTCCCTAA-ATCACTGAAACCG 1557
|| || || |||||||| ||||||||||| | ||| || ||| || || |||| ||||
Sbjct 1416 AGCCGCCCAATGCCTAACACACCCATGGTTCACTCCAGG-CCC-AAGATTACTGGAACCA 1473
Query 1558 TCATCGAGTCCACAAAATCCCAAAGAAGAAGAAGAGGAAGCGTCGGATGAGGATAAAGAT 1617
|||| || || ||| |||| |||| ||||| ||| | || ||||| | | |||
Sbjct 1474 TCATTGAAACCGCAACATCCAAAAGGAGAAG--GAGCA-GCAA---ATGAGAACATAGAA 1527
Query 1618 AAGGAAAAGGTTGAGAGGGAAGCCATGGAGGCAGGTGTTGGAAATATCGCCATTGATGGC 1677
|||||||||| || || || || |||||||| ||||| || ||||||||||||||||||
Sbjct 1528 AAGGAAAAGGACGAAAGAGAGGCAATGGAGGCTGGTGTAGGGAATATCGCCATTGATGGC 1587
Query 1678 TCGGAAA-GAAAGACCTCAGCAAGAGAAGGTCGTCAAT 1714
|| ||| ||| | | | | |||||||| |||||||
Sbjct 1588 TCTGAACCGAAGGTGGTAA-CGAGAGAAGGACGTCAAT 1624
> Ahg485678 jgi|Araly1|485678|fgenesh2_kg.5__1670__AT3G53030.1
Length=1871
Score = 303 bits (164), Expect = 3e-81
Identities = 401/514 (78%), Gaps = 22/514 (4%)
Strand=Plus/Plus
Query 161 GTGACTACTCATCAGAGGACGAAGGAACAGAAGATTACAGAAGAGGAGGTTACCA-TACG 219
|||| ||| | || ||||||||||| || || |||||| | | || |||||||| | |
Sbjct 173 GTGAATACACGTCGGAGGACGAAGGTACGGAGGATTACCGGCGCGGCGGTTACCACT-CC 231
Query 220 GTTC-GAGTCGGTGA-TACTTTTAAGAATGGATC-TTATGTCATTCAAAGTAAGCTTGGT 276
|||| || ||||||| | | || || || || | ||||| |||| || || || |||
Sbjct 232 GTTCGGA-TCGGTGACT-CATTCAAAAACGG-CCGGTATGTTGTTCAGAGCAAACTCGGT 288
Query 277 TGGGGACATTTCTCCACTGTCTGGCTCGCTTGGGACACTCTCAA--CTCTCGATACGTAG 334
||||| |||||||| ||||| |||||||| ||||| | ||||| |||| |||| || |
Sbjct 289 TGGGGTCATTTCTCTACTGTTTGGCTCGCGTGGGATA--CTCAATCCTCTAGATATGTGG 346
Query 335 CTTTGAAA-ATCCAGAAGAGTGCTCAGCACTACACTGAAGCGGCCATGGATGAGATAAAG 393
|||| ||| | || |||||||||||||| || |||||||| ||||||||||||||||
Sbjct 347 CTTT-AAAGGTGCAAAAGAGTGCTCAGCATTATACTGAAGCTGCCATGGATGAGATAACT 405
Query 394 ATATTGAAACAGATTGCAGAAGGCGATGCGGAAGATAAGAAGTGTGTTGTGAAGCTTCTT 453
|||||| ||||||||||||| || || | || |||| || ||||||||||||||| ||
Sbjct 406 ATATTGCAACAGATTGCAGAGGGAGACACTGATGATACCAAATGTGTTGTGAAGCTT-TT 464
Query 454 -GATCATTTCAAGCA-TGCTGGTCCTAATGGGCAACATGTTTGTATGGTTTTTGAGTATT 511
|||||||| || || | | ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 465 GGATCATTTTAAACACT-CAGGTCCGAATGGGCAGCATGTATGTATGGTTTTTGAGTATT 523
Query 512 TGGGAGATAACCTCTTGTCGGTTATCAAGTACAGTGATTACCGAGGGGTT-CCTCTTCAT 570
|||||||||| || || || | || ||||| ||||||||| || || ||| |||
Sbjct 524 TGGGAGATAATCTGTTAACGCTGATTAAGTATTCTGATTACCGTGGC-TTGCCTATTCCG 582
Query 571 ATGGTTAAAGAGATCTGTTTTCATATCTTAGTTGGTTTGGATTATCTT-CATCGTGAACT 629
|||||||| ||||| |||| |||||| || ||||| || || || ||| ||| | ||
Sbjct 583 ATGGTTAAGGAGATTTGTTATCATATGTTGGTTGGGTTAGACTA-CTTGCATAAACAGCT 641
Query 630 TTCTATTATTCATACTGATATCAAGCCGGAGAAT 663
|| ||||| ||||||||| | ||||| ||||||
Sbjct 642 CTCGATTATACATACTGATCTGAAGCCTGAGAAT 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79875243765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5