BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22850.1
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489138 jgi|Araly1|489138|fgenesh2_kg.6__2272__AT5G22850.1 2911 0.0
Ahg898965 jgi|Araly1|898965|Al_scaffold_0005_2931 191 2e-47
> Ahg489138 jgi|Araly1|489138|fgenesh2_kg.6__2272__AT5G22850.1
Length=1955
Score = 2911 bits (1576), Expect = 0.0
Identities = 1859/1989 (93%), Gaps = 46/1989 (2%)
Strand=Plus/Plus
Query 1 ACACTTGAACATTTTCTGTTTATCCGCTG-T-TACTtctctctctctctctATCCCAAAA 58
||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1 ACACTGGAACATTTTCTGTTTATCCGCTGTTATACTTCTCTCTCTCTCTATATCCCAAAA 60
Query 59 GACGACACAAGTACAAACACAAATCTGCAAATCTTCTTCTTCTTCTGTCTTCATGAATTT 118
||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 61 GACGACACAAGTACAAA-ACAAATCTGCAAA---TCTTCTTCTTCTGTCTTAATGAATTT 116
Query 119 CAAGTCTAACAATTCCTAGCCGTTTACAATTTGACGGCACAATTCTTCATTCCTTGTCGT 178
|||| ||| | |||| |||||||| ||||||||||||| ||| ||| | | |
Sbjct 117 CAAGACTACCGATTCGTAGCCGTTAACAATTTGACGGCTCAA---TTC--T-C----C-A 165
Query 179 GCCCGGAAGTAAAAAGATGATCTTTTTGGTTTCTGATGAGATAAAACAGAGATCTTGTTA 238
| ||| ||||| |||||||||||| ||| ||| ||||| | |||||||||||||
Sbjct 166 G--AAGAA--AAAAAAATGATCTTTTTGATTTTTGACGAGAT--TA-AGAGATCTTGTTA 218
Query 239 ACACTT-ATAAGCAGACCCAACTCGGGAAGCTATGGCCGCTATTCGTTTTGCGGCGGCGA 297
|||||| | ||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 219 ACACTTCA-AAGCATACCCAACTCGGGAAGCTATGGTGGCTATTCGTTTCGCGGCGGCGA 277
Query 298 TTCTGATTTGCTGTTTATTACCGGCGGCGGTTTTGTCTTACGGTTTCCCGGCGGCGTTGA 357
||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 278 TTCTGATTTATTGTTTAGTACCGGCGGCGGTTTTATCTTACGGTTTCCCGGCGGCGCTGA 337
Query 358 AACTTGAAAGAGTTATTCCAGCGAATCACGAAATGGAACTTAGTCAGCTCAAGGCTCGTG 417
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 338 AACTTGAAAGAGTGATTCCGGCGAATCACGAGATGGAACTTAGTCAGCTCAAGGCTCGTG 397
Query 418 ATGAAGCTAGACACGGCAGATTGTTACAGTCTTTAGGTGGAGTCATAGATTTTCCCGTGG 477
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 398 ATGAAGCTAGACACGGCAGATTGTTACAGTCTTTAGGCGGAGTCATAGATTTTCCCGTCG 457
Query 478 ACGGAACTTTTGATCCTTTCGTTGTTGGACTGTACTACACGAAACTACGATTAGGAACTC 537
| ||||||||||||||||||||||||||| | |||||||||||| ||||||||||| |||
Sbjct 458 ATGGAACTTTTGATCCTTTCGTTGTTGGATTATACTACACGAAAATACGATTAGGATCTC 517
Query 538 CTCCAAGAGATTTTTATGTACAGGTTGATACAGGAAGTGATGTTTTGTGGGTTAGTTGTG 597
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 518 CTCCAAGAGATTTTTATGTACAGGTTGATACAGGAAGTGATGTTTTGTGGGCTAGTTGTG 577
Query 598 CTTCTTGTAATGGCTGTCCTCAAACCAGTGGACTCCAAATTCAGTTGAATTTCTTTGATC 657
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CTTCTTGTAATGGCTGCCCTCAAACCAGTGGACTCCAAATTCAGTTGAATTTCTTTGATC 637
Query 658 CAGGGAGCTCTGTAACAGCATCACCGATTTCATGTTCTGATCAAAGATGCAGTTGGGGTA 717
||||||| |||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 638 CAGGGAGTTCTGTAACAGCAACACCGGTCTCATGTTCTGATCAAAGATGCAGTTGGGGTA 697
Query 718 TTCAGTCTTCTGATTCAGGCTGTTCTGTTCAGAACAACCTTTGTGCTTACACGTTTCAGT 777
||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 698 TTCAGTCCTCTGCTTCTGGCTGTTCTGTTCAGAACAACCTTTGTGCTTATACGTTTCAGT 757
Query 778 ATGGGGATGGAAGTGGCACTTCAGGGTTCTACGTATCTGATGTCTTGCAATTTGATATGA 837
||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| ||||
Sbjct 758 ATGGGGATGGAAGTGGCACCTCAGGGTTTTACGTCTCGGATGTCTTGCAATTTGACATGA 817
Query 838 TTGTGGGAAGCTCTCTGGTCCCAAACTCAACGGCTCCGGTTGTGTTTGGTTGCAGCACCT 897
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 TTGTTGGAAGCTCTTTGGTCCCAAACTCAACGGCTCCGGTTGTGTTTGGTTGCAGCACCT 877
Query 898 CTCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGATGGAATCTTCGGGTTTGGGC 957
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 878 CGCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGATGGAATCTTCGGGTTTGGCC 937
Query 958 AGCAAGGAATGTCTGTCATTTCTCAGCTTGCTTCACAGGGAATAGCTCCAAGAGTGTTCT 1017
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 938 AGCAAGGAATGTCTGTGATTTCTCAGCTTGCTTCACAGGGATTAGCTCCAAGAGTGTTCT 997
Query 1018 CTCACTGCTTGAAAGGAGAGAATGGAGGCGGAGGCATATTGGTTCTTGGAGAGATTGTGG 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 998 CTCACTGCTTGAAAGGAGAGAATGGAGGCGGAGGCATACTGGTTCTTGGAGAGATTGTGG 1057
Query 1078 AGCCAAACATGGTCTTTACTCCACTTGTTCCCTCACAGCCTCATTACAATGTGAATCTGC 1137
|||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
Sbjct 1058 AGCCAAACATGGTCTTTACTCCTCTTGTCCCCTCGCAGCCTCATTACAATGTGAATCTTC 1117
Query 1138 TGAGCATCTCAGTAAATGGCCAAGCTTTACCTATCAATCCATCGGTCTTCTCTACATCAA 1197
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 TGAGCATCTCAGTGAATGGCCAAGCTTTACCTATCAATCCATCGGTCTTCTCTACATCAA 1177
Query 1198 ACGGCCAGGGAACAATCATTGACACTGGTACAACATTGGCATACCTTTCTGAAGCAGCCT 1257
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ACGGTCAGGGAACAATCATTGACACTGGTACAACATTGGCATACCTTTCTGAAGCAGCCT 1237
Query 1258 ATGTTCCTTTCGTTGAAGCTATTACAAATGCTGTTTCGCAGTCTGTCAGACCCGTTGTTT 1317
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1238 ATGTTCCTTTCGTTGAAGCTATTACAAATGCTGTTTCGCAGTCTGTCAGGCCCGTTGTTT 1297
Query 1318 CGAAAGGGAACCAATGTTACGTAATAACCACAAGTGTCGGAGACATATTTCCTCCAGTTA 1377
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1298 CGAAAGGGAACCAATGTTACGTAATAGCCACAAGTGTCGCAGACATATTTCCTCCAGTTA 1357
Query 1378 GCTTGAACTTTGCTGGTGGAGCATCTATGTTCTTGAATCCTCAGGATTACCTCATACAGC 1437
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1358 GCTTGAACTTTGCTGGTGGAGCATCCATGTTCTTGAATCCTCAGGATTACCTTATACAGC 1417
Query 1438 AGAACAATGTCGGAGGTACTGCAGTGTGGTGCATCGGTTTTCAAAGGATACAGAATCAAG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 AGAACAATGTCGGAGGTACTGCAGTGTGGTGCATCGGTTTTCAAAGGATACAGAATCAAG 1477
Query 1498 GGATAACGATCCTTGGAGATTTGGTTCTTAAAGACAAGATCTTTGTCTATGATCTGGTCG 1557
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 GGATAACAATCCTTGGAGATTTGGTTCTTAAAGACAAGATCTTTGTCTATGATCTGGTCG 1537
Query 1558 GTCAGAGAATCGGATGGGCAAACTACGACTGTTCGACGTCGGTAAATGTCTCAGCGACTA 1617
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1538 GTCAGAGAATCGGATGGGCAAACTACGACTGTTCAATGTCGGTAAATGTCTCAGCGACTA 1597
Query 1618 GCAGCAGCGGAAGAAGCGAATATGTGAACGCAGGACAGTTTAGTGAGAATGCTGCAGCAC 1677
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1598 GCAGCAGCGGAAGAAGCGAATATGTGAACGCAGGACAGTTTAGTGACAATTCTGCTGCAC 1657
Query 1678 CGCAGAAGTTATCTTTGGACATTGTTGGAAACACTCTAATGTTGTTACTAATGGTAATCA 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 CGCAGAAGTTATCTTTGGACATTGTTGGAAACACTCTAATGTTGTTACTAATGGTAATCA 1717
Query 1738 ACATGTTCTTATAGCAC--ACAGCTTTTCACAACTTTGCCTAAA-TTGTAGTTTCTTCGA 1794
||||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||| |
Sbjct 1718 ACATGTTCTTATAGCACGTACAGCTTTTG-CAACGTTGCCTAAAATTGTAGTTTCTTCTA 1776
Query 1795 TACCC-TTTTGATGTGGTCGTCGGCGTGTTAATTTGTGGTCACCGGCGAGTAAGTTTCTC 1853
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1777 TACCCCTTTTGATGTGGTCGTCGGCGTGTTA-TTTGTGGTCACCGGAGAGTAAGTTTCTC 1835
Query 1854 CCAACCGGCGAATCCCAGCAAAAGAAAAATTAACttgtttgttgtttgtttgtatgtttt 1913
|||||||||||| ||||||| ||||||| ||||| ||||||||||||||| | | ||||
Sbjct 1836 CCAACCGGCGAAGCCCAGCAGAAGAAAAGTTAAC--GTTTGTTGTTTGTTT-T-T-TTTT 1890
Query 1914 tttattcctatttcattgttatagtttt---tg-A-TGTACATAATTCCTTTTATACATA 1968
|| | || ||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1891 TT-A--CC-ATTTCATTGTTATAGTTTTGGATGTACTGTACATAATTCCTTTTATACATA 1946
Query 1969 GTTGTGTCT 1977
| ||||||
Sbjct 1947 ATGGTGTCT 1955
> Ahg898965 jgi|Araly1|898965|Al_scaffold_0005_2931
Length=168
Score = 191 bits (103), Expect = 2e-47
Identities = 130/142 (92%), Gaps = 6/142 (4%)
Strand=Plus/Plus
Query 1514 AGATTTGGTTCTTAAAGACAAGATCTTTGTCTATGATCTGGTCGGTCAGAGAATCGGATG 1573
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 24 AGAGTTGGTTCTTAAAGACAAGGTCTTTGTCTATGATCTGGTCGGTCAGAGAATCGGATG 83
Query 1574 G------GCAAACTACGACTGTTCGACGTCGGTAAATGTCTCAGCGACTAGCAGCAGCGG 1627
| ||||||| ||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct 84 GACAAACGCAAACTCCGACTGTTCAATGTCGGTAAATGTCTCAGCGACTAGCAGCAGCAG 143
Query 1628 AAGAAGCGAATATGTGAACGCA 1649
||||||||||||||||||||||
Sbjct 144 AAGAAGCGAATATGTGAACGCA 165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76370941225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5