BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22860.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326581 jgi|Araly1|326581|fgenesh1_pm.C_scaffold_6001801 2152 0.0
Ahg351306 jgi|Araly1|351306|fgenesh1_pg.C_scaffold_6001899 1387 0.0
Ahg941803 jgi|Araly1|941803|scaffold_602347.1 534 7e-151
> Ahg326581 jgi|Araly1|326581|fgenesh1_pm.C_scaffold_6001801
Length=1506
Score = 2152 bits (1165), Expect = 0.0
Identities = 1391/1502 (93%), Gaps = 7/1502 (0%)
Strand=Plus/Plus
Query 40 ATGTCTCTTCCATATACAATTCTCATTCTATTTATATTTTCAACATCTTCATCTTATTTG 99
||||||||| ||||| |||||||| ||||||| |||| ||||||||| ||||||||||
Sbjct 1 ATGTCTCTTGCATATTCAATTCTCCTTCTATTGATATCTTCAACATCGACATCTTATTTC 60
Query 100 ATCCCCCTCGCACACTCCAAAATCGCTAGACTTGGGATTTCCTCAAAAACGCTAAAGAAT 159
||| | |||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 61 ATCTCTTTCGCACACTCCAAAATTGCTCGACTTGCGATTTCCTCAAAAACGCTAAAGAAT 120
Query 160 GAACCTGATGGATCAACGCAAAAAGTAGATGAATCTAATCTTAAAATGTACTACTTTAAT 219
| ||| ||||||||||| |||||| ||||||||||| |||||||||| ||||||||||||
Sbjct 121 GCACCCGATGGATCAACACAAAAAATAGATGAATCTGATCTTAAAATATACTACTTTAAT 180
Query 220 CAGACACTCGATCACTTCACATTCACACCGGAAAGCTACATGACTTTTCAACAAAGATAC 279
||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 181 CAGACGCTCGACCACTTCACATTCACACCGAAAAGCTATATGACTTTTCAACAAAGATAT 240
Query 280 GCCATTGATTCCACGCACTGGGGTGGTGCTAAAGCCAACGCGCCAATCTTAGCATTTCTT 339
||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCATCAATTCCTCACACTGGGGTGGTGCTAAAGCCAACGCGCCAATCTTAGCATTTCTT 300
Query 340 GGAGAAGAATCGTCGTTAGACTCTGATTTGGCTGCCATCGGTTTTCTTCGTGACAACGGT 399
||||| |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 301 GGAGAGGAATCGTCGTTAGACTCTGACTTGTCTGGCATCGGTTTTCTTCGTGACAACGGT 360
Query 400 CCTCGCCTAAATGCGCTCCTCGTCTACATAGAGCATAGGTATTATGGGGAGACGATGCCA 459
|||| |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 361 CCTCACCTAAAAGCGCTCCTTGTCTACATAGAGCATAGGTATTATGGGAAGACGATGCCA 420
Query 460 TTTGGATCAGCAGAAGAAGCACTAAAGAACGCAAGTACGTTGGGGTATTTGAACGCAGCA 519
|||||||||||||||||| || | |||||||||||||||||||||||| |||||||||||
Sbjct 421 TTTGGATCAGCAGAAGAAACATTGAAGAACGCAAGTACGTTGGGGTATCTGAACGCAGCA 480
Query 520 CAAGCCCTAGCAGACTATGCCGCGATTCTCTTGCACGTTAAGGAGAAGTACTCCACCAAT 579
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAAGCCCTAGCAGATTACGCCGCGATTCTCTTGCACGTTAAGGAGAAGTACTCCACCAAA 540
Query 580 CACAGCCCTATCATTGTAATTGGAGGATCCTATGGTGGAATGTTAGCGGCATGGTTCAGG 639
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATAGCCCTATCATTGTAATAGGAGGATCCTATGGTGGAATGTTAGCGGCATGGTTCAGG 600
Query 640 CTAAAATATCCACACATAGCACTCGGAGCATTAGCATCTTCAGCTCCTCTTCTCTACTTT 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTAAAATATCCACACATAGCACTCGGAGCATTAGCATCTTCAGCTCCTCTTCTCTACTTT 660
Query 700 GAAGATACTCGTCCTAAATTTGGTTATTATTATATTGTAACCAAAGTTTTCAAGGAAGCA 759
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 661 GAAGATACTCGTCCTAAAATTGGTTATTATTATATTGTAACCAAAGTTTTCAAGGAAACG 720
Query 760 AGTGAAAGATGTTATAATACAATCCGTAATTCTTGGATAGAAATCGATAGAGTTGCTGGC 819
||||||||||||||||| | |||||||| || |||| |||||||||||||||||||| |
Sbjct 721 AGTGAAAGATGTTATAACATGATCCGTAAATCGTGGAAAGAAATCGATAGAGTTGCTGCC 780
Query 820 AAACCCAATGGTCTCTCGATCCTTAGCAAA-CAATTCAAAACTTGCGCTCCATTGAACGG 878
||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||
Sbjct 781 AAACCCAATGGTCTCTCAATCCTTAGCAAAACA-TTCAAAACTTGCGCTCCATTGAACGG 839
Query 879 AAGCTTCGATATCAAAGACTTTTTGGACACAATATATGCCGAAGCTGTTCAATACAACCG 938
||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 840 AAGCTTCAATATCAAAGACTTCTTGGACACGATATATGCCGAAGCTGTTCAATACAACCG 899
Query 939 AGGTCCGAATTTTTGGGTGGCCAAAGTGTGCAACGCAATCAACGCCAATC-CACCAAACC 997
||||||| || |||||||||||| ||||||||||||||||||||||| | |||||||||
Sbjct 900 GGGTCCGAGTTATTGGGTGGCCAACGTGTGCAACGCAATCAACGCCAA-CACACCAAACC 958
Query 998 GTAGATACAATTTACTCGACCGGATTTTTGCTGGTGTTGTCGCTTTAGTAGGCAACCGAA 1057
||| | |||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 959 GTAAAAACAATTTACTCGACCGAATTTTTGCTGGTGTTGTCGCTTTAATAGGCAACCGAA 1018
Query 1058 CTTGCTATGATACAAAAATGTTTGCGCAGCCAACAAACAATAACATCGCATGGAGATGGC 1117
||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1019 CTTGCTATGATACCAATATGTTTTCGCAGGCAACAAACAATAACATCGCATGGAGATGGC 1078
Query 1118 AGAGCTGCAGCGAGATAGTGATGCCCGTGGGATATGACAAACAAGATACAATGTTCCCAA 1177
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1079 AGAGCTGCAGCGAGATAGTGATACCCGTGGGATATGACAAACAAGATACAATGTTTCCAA 1138
Query 1178 CGGCACCATTTAACATGACCAGTTACATTGATGGATGTAAGTCTTATCATGGTGTCACTC 1237
||||||| |||||||||||||||||||||||||| ||| |||||||| |||||||| |||
Sbjct 1139 CGGCACCGTTTAACATGACCAGTTACATTGATGGGTGTGAGTCTTATTATGGTGTCCCTC 1198
Query 1238 CTAGACCACATTGGATCACAACTTATTTCGGCATTCAGGAGGTCAAGTTAATCCTCCAAA 1297
|||||||||||||||||||||| || ||||||| |||||| |||||||||||||||| ||
Sbjct 1199 CTAGACCACATTGGATCACAACGTACTTCGGCACTCAGGATGTCAAGTTAATCCTCCGAA 1258
Query 1298 AATTTGGAAGCAACATCATTTTCTCTAATGGATTGTCTGATCCTTATAGCGTTGGCGGAG 1357
|||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 1259 GATTTGGGAGCAACATCATTTTTTCTAATGGATTGTCAGATCCTTACAGCGTTGGCGGAG 1318
Query 1358 TTTTGGAGGATATTTCAGATACTTTAGTTGCCATTACGACAAAAAATGGTTCACATTGTC 1417
| ||||||||||||||||||||| |||| || || |||||||| ||||||||||||||
Sbjct 1319 TCTTGGAGGATATTTCAGATACTGTAGTCGCAATCACGACAAA---TGGTTCACATTGTC 1375
Query 1418 TAGATATCACCTTGAAGAGCAAAGAAGATCCGGAGTGGCTAGTGATTCAAAGAGAGAAAG 1477
|||||||| ||||||| ||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 1376 AAGATATCAGTTTGAAGAACAAAGAAGATCCGCAGTGGCTGGTGATGCAAAGAGAGAAAG 1435
Query 1478 AGATTAAAGTTATTGATTCTTGGATTTCAACTTATCAAAATGATCTAAGAGATCTTAACA 1537
||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 1436 AGATTAAAGTTATTGATTCTTGGATTTCAACGTACCAAAATGATCTACGAGATCTTAACA 1495
Query 1538 TG 1539
||
Sbjct 1496 TG 1497
> Ahg351306 jgi|Araly1|351306|fgenesh1_pg.C_scaffold_6001899
Length=1284
Score = 1387 bits (751), Expect = 0.0
Identities = 1124/1300 (86%), Gaps = 41/1300 (3%)
Strand=Plus/Plus
Query 259 ATGACTTTTCAACAAAGATACGCCATTGATTCCACGCACTGGGGTGGTGCTAAAGCCAAC 318
|||||||||||||||||||| ||||| ||| ||| ||| |||| |||||||||||| |||
Sbjct 1 ATGACTTTTCAACAAAGATATGCCATCGATGCCAAGCATTGGGCTGGTGCTAAAGCGAAC 60
Query 319 GCGCCAATCTTAGCATTTCTTGGAGAAGAATCGTCGTTAGACTCTGATTTGGCTGCCATC 378
|| ||||||||||||||||||||| ||| |||||||||| |||||||||||||| |
Sbjct 61 GCACCAATCTTAGCATTTCTTGGACTGGAAGCGTCGTTAGAGACTGATTTGGCTGCCTTT 120
Query 379 GGTTTTCTTCGTGACAACGGTCCTC-GCCTAAATGCGCTCCTCGTCTACATAGAGCATAG 437
||||||||| ||||||||| ||||| |||| |||||| ||||| |||||||||||
Sbjct 121 GGTTTTCTTAGTGACAACGCTCCTCATTTTAAA-GCGCTCAAAGTCTATATAGAGCATAG 179
Query 438 GTATTATGGGGAGACGATGCCATTTGGATCAGCAGAAGAAGCACTAAAGAACGCAAGTAC 497
|||||||||| |||| || ||||||||||| ||| |||||||| | |||||||| |||||
Sbjct 180 GTATTATGGGAAGACAATTCCATTTGGATCGGCAAAAGAAGCAATGAAGAACGCGAGTAC 239
Query 498 GTTGGGGTATTTGAACGCAGCACAAGCCCTAGCAGACTATGCCGCGATTCTCTTGCACGT 557
|||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GTTGGGGTATTTGAACTCAGCTCAAGCCCTAGCAGACTACGCCGCGATTCTCTTGCACGT 299
Query 558 TAAGGAGAAGTACTCCA-CCA-ATCACAGCCCTATCATTGTAATTGGAGGATCCTATGGT 615
|||||||||||||| || | | | ||||||||||||||||| | |||||||||||||||
Sbjct 300 TAAGGAGAAGTACT-CAGCTACA-CACAGCCCTATCATTGTCGTAGGAGGATCCTATGGT 357
Query 616 GGAATGTTAGCGGCATGGTTCAGGCTAAAATATCCACACATAGCACTCGGAGCATTAGCA 675
|||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct 358 GGAATGTTAGCGGCATGGTTTAGGCTAAAATATCCGCACATAGCACTTGGGGCATTAGCA 417
Query 676 TCTTCAGCTCCTCTTCTCTACTTTGAAGATACTCGTCCTAAATTTGGTTATTATTATATT 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TCTTCAGCTCCTCTTCTCTACTTTGAAGATACTCGTCCTAAATTTGGTTATTATTATATT 477
Query 736 GTAACCAAAGTTTTCAAGGAAGC-AAGTGAA-AGATGTTATAATACAATCCGTAATTCTT 793
|||||||||||||||||||| | || | || |||||||| || || || || || ||||
Sbjct 478 ATAACCAAAGTTTTCAAGGAAACGAA-T-AAGAGATGTTACAACACGATTCGCAAATCTT 535
Query 794 GG-ATAGAAATCGATAGAGTTGCTGGCAAACCCAATGGTCTCTCGATCCTTAGCAAACAA 852
|| | |||||| |||||||||||| ||||||||| ||| | | |||||| |||||| ||
Sbjct 536 GGGA-AGAAATTGATAGAGTTGCTTCCAAACCCAACGGTTTATTGATCCTCAGCAAA-AA 593
Query 853 -TTCAAAACTTGCGC---TCCATTGAACG--GAAGCTTCGATATCAAAGACTTTTTGGAC 906
|||||||||||||| |||| | || | ||||||||||| | |||||||| ||||||
Sbjct 594 GTTCAAAACTTGCGCCAGTCCACT-AA-GTAGAAGCTTCGATCTTAAAGACTTCTTGGAC 651
Query 907 ACAATATATGCCGAAGCTGTTCAATACAACCGA-GGTCCGAATTTTTGGGTGGCCAAAGT 965
|| |||| || ||| ||||||||||||| || ||| | ||| ||||| |||| ||
Sbjct 652 ACGGTATACGCTGAAACTGTTCAATACAAT-GATGGT--G--TTT--GGGTGACCAACGT 704
Query 966 GTGCAACGCAATCAACGCCAATCCACCAAACCGTAGA-TACAATTTACTCGACCGGATTT 1024
|||||| |||||||||||||| || |||||||||| | | | | |||||||||||||||
Sbjct 705 GTGCAATGCAATCAACGCCAACCCGCCAAACCGTAAAATTGA-TATACTCGACCGGATTT 763
Query 1025 TTGCTGGTGTTGTCGCTTTAGTAGGCAACCGAA-CTTGCTATGATACAAAAATGTT-TGC 1082
| || ||||||||||||||| ||||| || || |||||||| |||| || | || ||
Sbjct 764 TCGCAGGTGTTGTCGCTTTAACAGGCAGCC-AATCTTGCTATAATACCAAT-TATTCTGT 821
Query 1083 GCAGC-CAACAAACAATAACATCGCATGGAGATGGCAGAGCTGCAGCGAGATAGTGATGC 1141
|||| || |||||||| | || ||||||||||||||| ||||||||||||||||| | |
Sbjct 822 GCAGGTCA-CAAACAATGATATGGCATGGAGATGGCAGTGCTGCAGCGAGATAGTGGTAC 880
Query 1142 CCGTGGGATATGACAAACAAGATACAATGTTCCCAACGGCACCATTTAACATGACCAGTT 1201
| |||||| ||||||||||||| ||||||| || ||| |||| ||||| ||||||||||
Sbjct 881 CGGTGGGACATGACAAACAAGACACAATGTACCAAACATCACCGTTTAATATGACCAGTT 940
Query 1202 ACATTGATGGA-TGT-AAGTCTTATCATGGTGTCACTCCTAGACCACATTGGATCACAAC 1259
||||||| | | ||| || |||| | |||||||| |||||||||||||||||||||||||
Sbjct 941 ACATTGAAG-ACTGTGAA-TCTTCTTATGGTGTCTCTCCTAGACCACATTGGATCACAAC 998
Query 1260 TTATTTCGGCATTCAGGAGGTCAAGTTAATCCTCCAAAAATTTGGAAGCAACATCATTTT 1319
|| ||||||| ||| | ||||||||||||||||||| |||||| ||||||||||||||
Sbjct 999 GTACTTCGGCACTCAAAATGTCAAGTTAATCCTCCAAAGATTTGGGAGCAACATCATTTT 1058
Query 1320 CTCTAATGGATTGTCTGATCCTTATAGCGTTGGCGGAGTTTTGGAGGATATTTCAGATAC 1379
||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1059 TTCTAATGGATTATCAGATCCTTACAGCGTTGGCGGAGTTTTAGAGGATATTTCAGATAC 1118
Query 1380 TTTAGTTGCCATTACGACAAAAAATGGTTCACATTGTCTAGATATCACCTTGAAGAGCAA 1439
| |||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1119 TGTAGTCGCCATCACGACAAAAAATGGTTCACATTGTCAAGATATCAATTTGAAGAGCAA 1178
Query 1440 AGAAGATCCGGAGTGGCTAGTGATTCAAAGAGAGAAAGAGATTAAAGTTATTGATTCTTG 1499
|| |||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1179 AGGAGATCCAGAGTGGCTGGTGATGCAAAGAGAGAAAGAGATTAAAGTTATTAATTCTTG 1238
Query 1500 GATTTCAACTTATCAAAATGATCTAAGAGATCTTAACATG 1539
||||||||| || |||||||||||||||||||||||||||
Sbjct 1239 GATTTCAACGTACCAAAATGATCTAAGAGATCTTAACATG 1278
> Ahg941803 jgi|Araly1|941803|scaffold_602347.1
Length=1529
Score = 534 bits (289), Expect = 7e-151
Identities = 1024/1369 (75%), Gaps = 89/1369 (7%)
Strand=Plus/Plus
Query 203 AAATGTACTACTTT-AATCAGACACTCGATCACTTCACATTCACACCGGAAAGCTACATG 261
|||| | || |||| || || || || || |||||||| | ||| |||| ||| |||| |
Sbjct 185 AAATTTTCTTCTTTGAA-CAAACCCTTGACCACTTCACCTACACTCCGGGAAGTTACAAG 243
Query 262 ACTTTTCAACAAAGATACGCCATTGATTCCACGCACTGGGGTGGTGCTAAAGCCAACGCG 321
| || | ||||||||| ||| | |||||| | | |||| |||| ||| |||| ||
Sbjct 244 AAGTTCCGACAAAGATATGCCGTCAATTCCAAGTATTGGGAAGGTGGAAAAACCAATGCA 303
Query 322 CCAATCTTAGCATT-TCTTGGAGAAGAATCGTCGTTAGACTCTGATTTG-GCTG-CCATC 378
|| ||| |||| || |||||||| ||||| || || |||||||| ||| || | | |
Sbjct 304 CCTATCCTAGC-TTATCTTGGAGCGGAATCTTCATTGGACTCTGAATTGAGC-GTTC-TT 360
Query 379 GGTTTTCTTC-GTGACAACGGTCCTCGCCT-AAATGCGCTCCTCGTCTACATAGAGCATA 436
|| ||| || || |||| ||||| | ||| || ||| | ||||||||||||||||
Sbjct 361 GG-CTTCCTCAAAGATAACGCTCCTCATTTCAAA-GCCCTCATGGTCTACATAGAGCATA 418
Query 437 GGTATTATGGGGAGACGATGCCATTTGGATCAGCAGAAGAAGCACTAAAGAACG-CAAGT 495
||| ||| || || || ||||||||||| || || || ||| | | ||||||| |||
Sbjct 419 GGTTTTACGGAGAAACTATGCCATTTGGGTCGGCGGAGGAAACGTTGAAGAACGCCAA-A 477
Query 496 ACGTTGGGGTATTTGAACGCAGCACAAGCCCTAGCAGACTATGCCGCGATTC-TCTTGCA 554
|| ||||| ||||| ||||| || |||||||| || || ||||| || |||| || ||||
Sbjct 478 ACCTTGGGATATTTAAACGCTGCTCAAGCCCTTGCGGATTATGCTGCAATTCTTC-TGCA 536
Query 555 CGTTAAGGAGA-AGTACTCCA-CCAATCACAGCCCTATCATTGTAATTGGAGGATCCTAT 612
| ||||||||| | |||| || | || ||||| || | || || |||||||||||||||
Sbjct 537 CATTAAGGAGACA-TACT-CAGCTAAACACAGTCCGGTAATAGTTATTGGAGGATCCTAT 594
Query 613 GGTGGAATGTTAGCGGCATGGTTCAGGCTAAAATATCCACACATAGCACTCGGAGCATTA 672
|| |||||||| || || ||||||| ||||||||| ||||||||||| ||||| || |||
Sbjct 595 GGCGGAATGTTGGCAGCTTGGTTCAAGCTAAAATACCCACACATAGCGCTCGGGGCTTTA 654
Query 673 GCATCTTCAGCTCCTCTTCTCTACTTTGAAGATACTCGTCCTAAATTTGGTTA-TTATTA 731
||||| ||||| ||||||||||| |||||||| || | ||| ||| |||||| || |||
Sbjct 655 GCATCCTCAGCCCCTCTTCTCTATTTTGAAGACACACTTCCAAAACATGGTTACTT-TTA 713
Query 732 TATTGTAACCAAAGTTTTCAAGGAAGCAAGTGA-AAGATGTTATAATACA-ATCCGTAAT 789
||| ||||||||||||||||||||| | || | || |||| |||| | | || |||||
Sbjct 714 TATAGTAACCAAAGTTTTCAAGGAAACGAGCCAGAA-ATGTCATAACA-AGATACGTAAA 771
Query 790 TCTT-GGATAGAAATCGATA-GAGTTGCTGGCAAACCCAATGGTCTCTCGATCCTTAGCA 847
|||| |||| ||||| || | || |||||| ||||||||| ||||| || ||||| ||||
Sbjct 772 TCTTGGGAT-GAAATAGACAGGA-TTGCTGCCAAACCCAACGGTCTGTCAATCCTCAGCA 829
Query 848 AACAATTCAAAACT-TGCGCTCCATTGAACGGA-AGC-TTCGATA-TC-AAAGACTTTTT 902
|| ||||| || || ||| ||| |||||| || | | || || | || |||| || | |
Sbjct 830 AAAAATTC-AAGCTGTGCAATCCTTTGAAC-GACACCATT-GA-ACTCAAAAG-CTATCT 884
Query 903 G-G-ACACAATATATGCC-GAAGCTGTTCAATACAACCGA-GGTCCGAATTTTTGGGTGG 958
| | | || ||||| ||| | | | | ||||||||| | | |||| | || ||| |
Sbjct 885 GAGTA-AC-ATATACGCCGGGA-CAGCTCAATACAA-CAACAATCCG---TATTCGGTTG 937
Query 959 CCAAAGTGTGCAACGCAATCAACGCCAATCCACCAAAC-CGT-AGATACAATTTACTCGA 1016
||| ||||| | || || ||| ||| ||||||||| | | ||| || |||| ||
Sbjct 938 CCAGCTTGTGCGAGGCTATTAACACCAGCCCACCAAACAC-TAAGA-GTGATCTACTAGA 995
Query 1017 CCGGATTTTTGCTGGTGTTGTCGCTT-TAGTAGGCAACCGAACTTGCTATGATACAAAAA 1075
|| ||| || || ||||| || |||| | | || || | || || || || |
Sbjct 996 CCAGATCTTCGCAGGTGTGGTTGCTTCT-GGGGGTAA---TA-TTTCT-TGTTA-TGGTA 1048
Query 1076 TGTTTGCGCAG-CCAACAAACAATAACATCGCATGGAGATGGCAGAGCTGCAGCGAGATA 1134
|| | ||| | |||||| || || ||||||| ||||||||| |||||||| ||
Sbjct 1049 TG---GATCAGATC-ACAAACGATGCCAGGGCATGGACATGGCAGAGTTGCAGCGAAATG 1104
Query 1135 GTGATGCCCGTGGGATATGACAAACAAGATACAATGTTCCCAA-CGGCACCATTTAACAT 1193
|| |||||| | |||||||| ||| ||||||| ||||| |||| || ||| || || ||
Sbjct 1105 GTTATGCCCATAGGATATGAGAAAGAAGATACTATGTT-CCAACCGAAACCGTTCAATAT 1163
Query 1194 GACCAGTTACATTGATGGA-TG-TAAGTCTTA-TCATGGTGTCACTCCTAGACCACATTG 1250
|| ||||| | | | | || || || | | | |||||| | ||| | || |||||
Sbjct 1164 GAGCAGTTTTACT-AAAAACTGCGAA-TCACAGT-ACGGTGTCTCACCTCGTCCGCATTG 1220
Query 1251 GATCACAACTTATTTCGGCAT-TCAGGAGGTCAAGTTAATCCTCCAAAAATTTGG-AAGC 1308
| |||| | || ||||| | |||||| || |||||||| | | | |||||| || |
Sbjct 1221 GGTCACGGCATACTTCGG-TTCTCAGGACGTTAAGTTAATTTTTCGACGATTTGGCAA-C 1278
Query 1309 AACATCATTTTCTCTAATGGATTGTCT-GATCCTTATAGCGTTGGCGGAGTTTTGGAGGA 1367
||||| || ||||| ||||| |||| | ||||| ||||| || ||||| || ||||||||
Sbjct 1279 AACATAATCTTCTCCAATGGGTTGT-TAGATCCATATAGTGTCGGCGGCGTATTGGAGGA 1337
Query 1368 TATTTCAGATACTTTAGTTGCCATTACGACAAAAAATGGTTCACATTGTCTA-GATATCA 1426
||| ||||| ||| || ||||||| ||||||| | | || || ||||||| | || ||
Sbjct 1338 TATCTCAGACACTGTAATTGCCATCACGACAAGAGACGGCTCTCATTGTC-AGGACATTG 1396
Query 1427 CCTTGAAGAGCAAAGAAGATCCGGAGTGGCTAGT-GATTCAAAGAGAGAAAG-AGATTAA 1484
||| |||||||| || || ||||||||||| || || ||||||||||||| || ||||
Sbjct 1397 TCTTAAAGAGCAAGGAGGACCCGGAGTGGCTGGTGGA-GCAAAGAGAGAAAGAAG-TTAA 1454
Query 1485 AGTTATTGATTCTTGGATTTCAACTTATCAAAATGATCT-AAGAGATCT 1532
| | ||||||||||||||||||||||||||||| ||||| || | ||||
Sbjct 1455 AATAATTGATTCTTGGATTTCAACTTATCAAAAAGATCTTAACATATCT 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5