BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22870.1
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941802 jgi|Araly1|941802|scaffold_602346.1 915 0.0
> Ahg941802 jgi|Araly1|941802|scaffold_602346.1
Length=674
Score = 915 bits (495), Expect = 0.0
Identities = 580/621 (93%), Gaps = 6/621 (1%)
Strand=Plus/Plus
Query 7 CACAAGCCCAAGCTAGAATTGATGCCGA-TGGAAACTTCGCCAGCGCAGCCATTGCGCCG 65
||||||| ||| |||||| ||||| | || |||||||||||||||||||| |||| ||
Sbjct 33 CACAAGCTCAACCTAGAACCAATGCC-ATTGAAAACTTCGCCAGCGCAGCCACTGCGTCG 91
Query 66 CCCTAGCCTTATATGCTACATTTTTCTCGTTATACTAACTCTAATCTTCATGGCAGCTGT 125
|||||||||| ||||||| |||||||||| |||||||||||||| || || ||||||||
Sbjct 92 CCCTAGCCTTGTATGCTATGTTTTTCTCGTCATACTAACTCTAATATTTATCGCAGCTGT 151
Query 126 AGGTTTTCTCATTACATGGCTTGAAACCAAACCCAAGAAACTTCGTTACACTGTTGAAAA 185
|||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 152 AGGTTTCCTCATTACCTGGCTTGTAACCAAACCCAAGAAACTTCATTACACTGTTGAAAG 211
Query 186 CGCCTCGGTTCA-AAACTTTAACCTTACCAACGACAATCACATGTCAGCTACATTCCAAT 244
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 212 CGCCTCGGTT-AGAAACTTTAACCTTACCAACGACAATCACATGTCAGCTACATTCAAAT 270
Query 245 TCACCATCCAATCGCACAACCCTAACCACAGAATCTCGGTTTACTACAGTTCCGTCGAGA 304
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 TCACCATACAATCGCACAACCCTAACCACAGAATCTCGGTTTACTACAGTTCCGTCGAGA 330
Query 305 TATTCGTTAAATTCAAAGACCAGACGCTTGCGTTCGACAC-AGTGGAGCCGTTTCACCAA 363
|||||||||||||||| |||||||| |||||||||||||| | |||||||||||||||||
Sbjct 331 TATTCGTTAAATTCAAGGACCAGACACTTGCGTTCGACACGA-TGGAGCCGTTTCACCAA 389
Query 364 CCGCGGATGAACGTTAAGCAGATTGATGAAACGTTGATTGCGGAAAACGTTGCCGTTTCA 423
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 390 CCGCGGATGAACGTTAAGCAGATTGATGAAACGTTGGTTGCGCAAAACGTTGCCTTTTCC 449
Query 424 AAATCCAATGGTAAGGATTTGAGGTCTCAAAATTCGTTGGGAAAGATTGGGTTTGAAGTT 483
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 450 AAATCCAATGGTAAGGATTTGAGGTCTCAAACTTCGTTGGGAAAGATTGAGTTTGAAGTT 509
Query 484 TTTGTTAAGGCTAGGGTTAGGTTTAAAGTGGGGATATGGAAGTCATCACATCGTACAGCT 543
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 510 TTTGTTAAGGCGAGGGTTAGGTTTAAAGTGGGGATATGGAAGTCATCACATCGTACGGCT 569
Query 544 AAGATTAAGTGTTCTCATGTCACGGTCTCTTTGTCGCAGCCTAACAAATCCCAAAATAGT 603
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 570 AAGATTGAGTGTTCTCATGTCACGGTCTCTTTGTCGCAGCCAAACAAATCCCAAAATAGT 629
Query 604 TCATGTGATGCTGATATTTGA 624
|| ||||||||||||||||||
Sbjct 630 TCGTGTGATGCTGATATTTGA 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22835627283
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5