BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G22875.1

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489143 jgi|Araly1|489143|fgenesh2_kg.6__2277__AT5G22875.2         483    7e-136


> Ahg489143 jgi|Araly1|489143|fgenesh2_kg.6__2277__AT5G22875.2
Length=467

 Score =  483 bits (261),  Expect = 7e-136
 Identities = 363/410 (89%), Gaps = 16/410 (4%)
 Strand=Plus/Plus

Query  81   ttttttGTTTGGGTTACAAAGCCAAAACGAGAGATTACAATGGCACCATCACGTAACATC  140
            ||| ||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||| 
Sbjct  74   TTTCTTGTTTGGGTTTCAAAGGCAAAAC--GAGATTACAATGGCACCATCACGTAACATA  131

Query  141  GTTGTAGCCACCGGTTTGGTTCTTTTCGCATCTGCAGGCTTAGCTTTCCCCTTTTACATG  200
            ||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  132  GTTGTAGCCACCGGTCTGGTTGTTTTCGCATCTGCAGGCTTAGCATTCCCCTTTTACATG  191

Query  201  GCATCTTCGAAACAACCAGTTATCGATCCAACAAAACCATTACCTCCTCAAGCAACTTTT  260
            ||||| || ||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct  192  GCATCGTCTAAACAACCAGTGATCGATCCAACAAAACCGTTACCTCCTCAAGCAACGTTT  251

Query  261  AGAGGACCTTACATAAACACAGGCTCACGCGATGTTGGACCTGATCATCGAACTTACCCA  320
            |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct  252  AGAGGACCTTACATAAACACTGGTTCACGCGATGTTGGACCTGACCATCGAACTTACCCA  311

Query  321  AAGAAATGATCCAATCAAGTCAAAACAATTACGCAGGTGTTTTCATTGTGAGCTTTGTAT  380
            ||||||||||||||||||||||| | ||| | |||||||||||||||||||     | | 
Sbjct  312  AAGAAATGATCCAATCAAGTCAAGATAATCAAGCAGGTGTTTTCATTGTGAA----G-A-  365

Query  381  TCATAAGATAATATCGTTTTGTAGTTTGTTCTCCAATCCATTTAAGTCGTTGTCCTTCAT  440
             || |   || |  ||||||| ||||||| ||| ||||||| ||| ||||| | ||||||
Sbjct  366  -CA-A---TA-T--CGTTTTGAAGTTTGTGCTCGAATCCATGTAACTCGTTATGCTTCAT  417

Query  441  GTAACACCAGTCCAACTTAACCATTGAATGTAACTGAAGAAACAGATTTA  490
            |||||||||||||||| ||||||||||||| |||||||||| | ||||||
Sbjct  418  GTAACACCAGTCCAACCTAACCATTGAATGAAACTGAAGAATCGGATTTA  467


 Score = 75.0 bits (40),  Expect = 5e-13
 Identities = 42/43 (98%), Gaps = 0/43 (0%)
 Strand=Plus/Plus

Query  7   CCCAAATGATTCACTGAGTCGACTCGACCTCCTCATATCCCAA  49
           |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  29  CCCAAATGTTTCACTGAGTCGACTCGACCTCCTCATATCCCAA  71



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18238371542


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5