BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22880.1
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1 833 0.0
Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1 399 9e-111
Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1 387 7e-107
Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266 322 2e-87
Ahg470811 jgi|Araly1|470811|fgenesh2_kg.1__765__AT1G07790.1 268 3e-71
Ahg478268 jgi|Araly1|478268|fgenesh2_kg.3__969__AT3G09480.1 207 6e-53
> Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1
Length=526
Score = 833 bits (451), Expect = 0.0
Identities = 502/527 (95%), Gaps = 1/527 (0%)
Strand=Plus/Plus
Query 49 TTTGAAAATGGCGAAGGCAGATAAGAAACCAGCGGAGAAGAAACCGGCAGAGAAAACTCC 108
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1 TTTGAAAATGGCGAAGGCAGACAAGAAACCAGCAGAGAAGAAACCGGCAGAGAAAACTCT 60
Query 109 GGCAGCCGAACCAGCAGCAGCGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAA 168
||||||||| || ||||| |||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 61 GGCAGCCGAGCCCGCAGCGGCGGCAGAGAAGAAACCAAAAGCCGGCAAGAAGCTCCCAAA 120
Query 169 GGAACCAGCCGGCGCCGGAGACAAGAAGAAGAAGAGATCAAAGAAGAACGTTGAGACATA 228
|||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 121 GGAACCTGCCGTCGCCGGAGACAAGAAGAAGAAGAGATCTAAGAAGAACGTCGAGACGTA 180
Query 229 CAAGATCTACATCTTCAAGGTGTTGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAA 288
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 181 CAAGATCTACATCTTCAAGGTGTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAA 240
Query 289 AGCCATGGGAATCATGAACAGTTTCATCAATGATATCTTTGAGAAACTTGCTGGTGAGTC 348
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 AGCCATGGGAATCATGAACAGTTTCATCAACGATATCTTTGAGAAACTTGCTGGTGAGTC 300
Query 349 TTCGAAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 TTCGAAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGC 360
Query 409 GGTGAGACTTGTGTTGCCTGGAGAGTTGGCGAAACATGCTGTTTCTGAAGGGACTAAGGC 468
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 361 GGTGAGACTTGTGTTGCCTGGTGAGTTGGCAAAACATGCTGTTTCTGAAGGGACTAAGGC 420
Query 469 GGTTACGAAGTTTACGAGTTCTTAGATTTGGAATGTGGTTTTGTAATGGAGGAGAAGTAG 528
||||||||||||||||||| ||||||||||||||||| |||||||||||||| | |||||
Sbjct 421 GGTTACGAAGTTTACGAGTACTTAGATTTGGAATGTG-TTTTGTAATGGAGGTGTAGTAG 479
Query 529 TAGTAGTAGTTGGAATGTGAAATAGGGTTTATGCTTTTGGGTATCTT 575
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 480 TAGTAGTAGTTGGAATGTGAAATAGAGTTTATGCTTTTGGGTATCTT 526
> Ahg484983 jgi|Araly1|484983|fgenesh2_kg.5__975__AT3G46030.1
Length=565
Score = 399 bits (216), Expect = 9e-111
Identities = 374/447 (84%), Gaps = 24/447 (5%)
Strand=Plus/Plus
Query 62 AAGGCAGATAAGAAACCAGCGGAGAAGAAACC-G-GCA-GAGAAAACTCCGGCAGCCGAA 118
|||||||| ||||| || || ||||||||||| | | | ||| ||| | | ||||| |
Sbjct 76 AAGGCAGAGAAGAAGCCGGCAGAGAAGAAACCAGTGGAGGAG-AAA-T-CAAAAGCCG-A 131
Query 119 CCAGCAGCAGCGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAAGGAA-CCAGC 177
| ||| |||| |||||||||||||||||||| |||||||||||||| ||| || |
Sbjct 132 -GA-AAGCTCCGGCGGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCC-GG 188
Query 178 CGGCGCCGGAGACAAGAAGAAGAAGA-GATCA-AAGAAGAACGTTGAGACATACAAGATC 235
|| || |||||||||||||||||||| || | ||||||| ||||||||||||||||||
Sbjct 189 CGCCGGCGGAGACAAGAAGAAGAAGATGA--AGAAGAAGAGTGTTGAGACATACAAGATC 246
Query 236 TACATCTTCAAGGTGT-TGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAAAGCCAT 294
|||||||||||||| | |||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 247 TACATCTTCAAGGT-TCTGAAGCAAGTTCATCCAGATATTGGAATCTCAAGCAAAGCTAT 305
Query 295 GGGAATCATGAACAGTTTCATCAATGATATCTTTGAGAAACTTG-C-TGGTGAGTCTTCG 352
||||||||||||||||||||| || |||||||| |||||| ||| | | | || || |||
Sbjct 306 GGGAATCATGAACAGTTTCATTAACGATATCTTCGAGAAA-TTGGCATCG-GAATCGTCG 363
Query 353 AAGCTTGCGAGGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCGGTG 412
|||||||| ||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 364 AAGCTTGCTAGGTATAATAAGAAGCCAACGATTACTTCTAGGGAGATTCAGACTGCTGTT 423
Query 413 AGACTTGTG-TTGCCTGGAGAGTTGGCGAAACATGCTGTTTCTGAAGGGACTAAGGCGGT 471
|||||||| || ||||| ||| | |||||||| |||||||||||||| |||||||| ||
Sbjct 424 AGACTTGTTCTT-CCTGGTGAGCTCGCGAAACACGCTGTTTCTGAAGGAACTAAGGCTGT 482
Query 472 TACGAAGTTTACGAGTTCTTAGATTTG 498
|| || || || || |||| || |||
Sbjct 483 GACTAAATTCACCAGCTCTT-GAATTG 508
> Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1
Length=673
Score = 387 bits (209), Expect = 7e-107
Identities = 325/378 (86%), Gaps = 19/378 (5%)
Strand=Plus/Plus
Query 129 CGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAAGGAA-CCAGCCGGCGCCGGA 187
||||||||||||||||||||||||| |||||||||||||| ||| || | || || |||
Sbjct 162 CGGCAGAGAAGAAACCAAAAGCCGGCAAGAAACTCCCGAAAGAAGCC-GGCGCCGGCGGC 220
Query 188 GACAAGAAGAAGAAGA-GATCA-AAGAAGAACGTTGAGACATACAAGATCTACATCTTCA 245
||||| |||||||||| || | ||||||| || ||||| |||||||||||||||||||
Sbjct 221 GACAAAAAGAAGAAGATGA--AGAAGAAGAGTGTCGAGACTTACAAGATCTACATCTTCA 278
Query 246 AGGTGT-TGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAAAGCCATGGGAATCATG 304
|||| | |||||||||||||||||||||| || || || |||||||| ||||||||||||
Sbjct 279 AGGT-TCTGAAGCAAGTTCATCCAGATATTGGTATTTCGAGCAAAGCTATGGGAATCATG 337
Query 305 AACAGTTTCATCAATGATATCTTTGAGAAACTT-GC-TGGTGAGTCTTCGAAGCTTGCGA 362
|||||||||||||| |||||||| |||||| || || | | || || |||||||||||||
Sbjct 338 AACAGTTTCATCAACGATATCTTCGAGAAA-TTGGCATCG-GAATCGTCGAAGCTTGCGA 395
Query 363 GGTACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCGGTGAGACTTGTG- 421
|||| || |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 396 GGTATAATAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTC 455
Query 422 TTGCCTGGAGAG-TTGGCGAAACATGCTGTTTCTGAAGGGA-CTAAGGCGGTTACGAAGT 479
|| ||||| ||| ||| ||||||| ||||||||||| |||| |||||||||| || || |
Sbjct 456 TT-CCTGGTGAGCTTG-CGAAACACGCTGTTTCTGA-GGGAACTAAGGCGGTGACCAAAT 512
Query 480 TTACGAGTTCTTAGATTT 497
| || || |||| |||||
Sbjct 513 TCACCAGCTCTT-GATTT 529
> Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266
Length=294
Score = 322 bits (174), Expect = 2e-87
Identities = 244/278 (88%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 199 GAAGAGATCAAAGAAGAACGTTGAGACATACAAGATCTACATCTTCAAGGTGTTGAAGCA 258
||||| ||| ||||||||| | ||||| ||||||||||||||||||||||| ||||||||
Sbjct 3 GAAGAAATCGAAGAAGAACATCGAGACGTACAAGATCTACATCTTCAAGGTTTTGAAGCA 62
Query 259 AGTTCATCCAGATATCGGAATCTCCAGCAAAGCCATGGGAATCATGAACAGTTTCATCAA 318
|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 63 AGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCATCAA 122
Query 319 TGATATCTTTGAGAAACTTGCTG-GTGAGTCTTCGAAGCTTG-CGAGGTACAACAAGAAG 376
|| ||||| |||||||| ||| | || || ||| | ||| | |||||||||||||||
Sbjct 123 CGACATCTTCGAGAAACTCGCTCAG-GAATCATCGC-GATTGGCTAGGTACAACAAGAAG 180
Query 377 CCGACGATTACTTCTAGGGAGATTCAGACTGCGGTGAGACTTGTGTTGCCTGGAGAGTTG 436
|||||||| |||||| |||| |||||||| |||||||||||||||||||||||||| |
Sbjct 181 CCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAACTC 240
Query 437 GCGAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTAC 474
||||||| |||||||||||||| ||||||||||||||
Sbjct 241 TCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTAC 278
> Ahg470811 jgi|Araly1|470811|fgenesh2_kg.1__765__AT1G07790.1
Length=666
Score = 268 bits (145), Expect = 3e-71
Identities = 293/365 (80%), Gaps = 7/365 (2%)
Strand=Plus/Plus
Query 129 CGGCAGAGAAGAAACCAAAAGCCGGAAAGAAACTCCCGAAGGAACCAGCCGG-CGCCGGA 187
|||| ||||||||||| || || || |||||| | || | | | | | || |||||
Sbjct 154 CGGCGGAGAAGAAACCCAAGGCGGGGAAGAAATTGCC-ACCG-A-C-GAAGGAGGCCGGC 209
Query 188 GACAAGAAGAAGAAGAGATCAAAGAAGAACGTTGAGACATACAAGATCTACATCTTCAAG 247
||||| ||||||||| | || ||||| ||| | || || |||||||||||||||||||||
Sbjct 210 GACAAAAAGAAGAAGCGTTCGAAGAAAAACATCGAAACCTACAAGATCTACATCTTCAAG 269
Query 248 GTGTTGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAAAGCCATGGGAATCATGAAC 307
||||||||||| ||||||||||||||||| || || |||||||||||||| || ||||||
Sbjct 270 GTGTTGAAGCAGGTTCATCCAGATATCGGGATTTCAAGCAAAGCCATGGGGATTATGAAC 329
Query 308 AGTTTCATCAATGATATCTTTGAGAAACTTGCTG-GTGAGTCTTCGAAGCTTGCGAGGTA 366
|| |||||||| || ||||| ||||| || ||| | || ||||||||||| || |||||
Sbjct 330 AGCTTCATCAACGACATCTTCGAGAAGCTAGCTCAG-GAATCTTCGAAGCTCGCAAGGTA 388
Query 367 CAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCGGTGAGACTTGTGTTGCC 426
||||||||||||||| || || ||| | ||||| ||||| || || ||||| || | ||
Sbjct 389 CAACAAGAAGCCGACAATCACATCTCGCGAGATCCAGACGGCTGTTAGACTCGTCCTCCC 448
Query 427 TGGAGAGTTGGCGAAACATGCTGTTTCTGAAGGGACTAAGGCGGTTACGAAGTTTACGAG 486
|| || | || ||||| ||||| |||||||| || |||||||| || |||||||| ||
Sbjct 449 CGGTGAACTCGCTAAACACGCTGTCTCTGAAGGTACCAAGGCGGTGACCAAGTTTACTAG 508
Query 487 TTCTT 491
||||
Sbjct 509 CTCTT 513
> Ahg478268 jgi|Araly1|478268|fgenesh2_kg.3__969__AT3G09480.1
Length=546
Score = 207 bits (112), Expect = 6e-53
Identities = 244/308 (79%), Gaps = 8/308 (3%)
Strand=Plus/Plus
Query 192 AGAAGAAGAAG-AGATCAAAGAAGAACGTTGAGACATACAAGATCTACATCTTCAAGGTG 250
||| ||||||| ||| | ||||||| | ||||| |||||||||||| | |||||||||
Sbjct 100 AGAGGAAGAAGAAGA-CTAAGAAGAGCACAGAGACGTACAAGATCTACCTATTCAAGGTG 158
Query 251 TTGAAGCAAGTTCATCCAGATATCGGAATCTCCAGCAAAGCCATGGGAATCATGAACAGT 310
||||| || |||||||| ||||| || ||||| | ||||||||||||||||||||||||
Sbjct 159 TTGAAACAGGTTCATCCTGATATTGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGT 218
Query 311 TTCATCAATGATATCTTTGAGAAACTTGCTG-GTGAGTCTTCGAAGCTTG-CGAGGTACA 368
|||||||| |||| ||| |||||| | ||| | || || || || ||| | ||||| |
Sbjct 219 TTCATCAACGATACCTTCGAGAAAATCGCTCAG-GAATCGTCAAAA-TTGGCTAGGTATA 276
Query 369 ACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCGGTGAGACTTGTGTTGCCTG 428
|||||||||||||||| || || |||| || || || || || || || ||||||||||
Sbjct 277 ACAAGAAGCCGACGATCACGTCCCGGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTG 336
Query 429 GAGAGTTGGCGAAACATGCTGTTTCTGAAGGG-ACTAAGGCGGTTACGAAGTTTACGAGT 487
| || || |||| || ||||||||||| ||| || || || || || || || || ||
Sbjct 337 GTGAATTATCGAAGCACGCTGTTTCTGA-GGGTACCAAAGCCGTCACAAAATTCACCAGC 395
Query 488 TCTTAGAT 495
||||||||
Sbjct 396 TCTTAGAT 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24436789797
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5